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1,000 results • Page
2 of 20
Sort: Rank
Rank
Views
Votes
Replies
1
vote
4
replies
184
views
Centromere and telomere positions for Chm13v2 assembly
centromere
chm13v2
1 day ago by
arsala521
▴ 10
0
votes
5
replies
255
views
featureCounts problem in reading Gff
featureCounts
GFF
RNA-seq
updated 1 day ago by
Ram
38k • written 1 day ago by
Beatrice
• 0
4
votes
0
replies
80
views
Tool:
PyComplexHeatmap: a Python package to visualize multimodal genomics data
visualization
Python
ComplexHeatmap
PyComplexHeatmap
updated 1 day ago by
Ram
38k • written 1 day ago by
Wubin
▴ 40
2
votes
2
replies
152
views
Retrieve hgnc_symbol from XM_ refseqs using BiomaRt
refseq_mrna_predicted
biomaRt
refseq
XM
14 hours ago by
ladina.hoesli
• 0
0
votes
1
reply
125
views
Time change in expression vs time change in phenotype
RNA-Seq
DGE
DESeq2
19 hours ago by
Ivan
• 0
0
votes
0
replies
79
views
How to perform a gsva assessing for the directonality of the genes.
gsva
1 day ago by
roybatty269
• 0
0
votes
4
replies
908
views
activity of unloaded/unassembled Tn5
sequencing
next-gen
updated 1 day ago by
ATpoint
70k • written 5.1 years ago by
zhaohainancau
• 0
7
votes
7
replies
503
views
Nextflow rnaseq finishing early
RNA-seq
nextflow
updated 1 day ago by
Ram
38k • written 1 day ago by
Raygozak
★ 1.4k
3
votes
6
replies
404
views
ClusterProfiler enrichKEGG – remove organism name in plots?
KEGG
ggplot2
enrichKEGG
ClusterProfiler
updated 1 day ago by
jv
★ 1.0k • written 8 days ago by
Sian
▴ 20
2
votes
0
replies
109
views
Herald:
The Biostar Herald for Tuesday, March 28, 2023
herald
1 day ago by
Biostar
1.6k
1
vote
4
replies
460
views
Retrieve protein sequence from Mgnify given only accession code
Mgnify
API
updated 1 day ago by
biomarco
▴ 20 • written 9 months ago by
jscience
• 0
1
vote
1
reply
202
views
Browsing MGnify IDs and clusters
metagenomics
mgnify
ebi
1 day ago by
biomarco
▴ 20
0
votes
0
replies
76
views
calculation of calibration factors using impuation reference panel and ethnicity
GWAS
Calibration
factor
1 day ago by
parveenkayenat
• 0
1
vote
4
replies
223
views
Artificial reads - remove multiple mapped reads against reference genome, and only keep reads that completely match without any mismatches - samtools
samtools
11 hours ago by
Agamemnon
▴ 60
0
votes
0
replies
79
views
Haploview linkage format .ped and .info file error
plink
Haploview
vcftool
1 day ago by
Nai
▴ 50
6
votes
1
reply
166
views
what is IGV visualization lighter color variants stand for
visualization
vcf
IGV
updated 1 day ago by
Jorge Amigo
14k • written 1 day ago by
zhangfish
▴ 50
0
votes
2
replies
1.6k
views
Error when changing the database for minfi dropLociWithSnps
SNP
minfi
methylationEPIC
illumina
methylation
updated 1 day ago by
Satu
• 0 • written 5.7 years ago by
Ellen O
▴ 20
0
votes
0
replies
115
views
How to export GWAS lists available in Open Targets database
GWAS
gene
openTargets
9 hours ago by
dzisis1986
▴ 60
0
votes
0
replies
111
views
Bcftools consensus generates mismatched consensus sequence
Consensus
sequence
1 day ago by
Duy
• 0
0
votes
0
replies
79
views
Is there a function to get the number of aligned sites between pairs of sequences in a multiple sequence alignment in R?
msa
R
1 day ago by
audrey
• 0
0
votes
0
replies
100
views
Nucleotide substitution model and neighbor-joining tree
phylogeny
substitution
mega
neighbor-joining
modeltest
11 hours ago by
poecile.pal
▴ 50
5
votes
7
replies
370
views
Most efficient way to run Diamond against a very very large database (i.e., NCBI's NR)?
protein
annotation
alignment
diamond
nr
1 day ago by
O.rka
▴ 650
0
votes
0
replies
99
views
Octopus advanced vcf guide: Example of overlapping vcf calls with *
vcf
spanning
alleles
octopus
22 hours ago by
penington.j
• 0
0
votes
0
replies
117
views
how can we improve genome assembly levels ? from contig to complete using bioinformatics pipelines?
contig
genome
pipelines
assembly
updated 1 day ago by
Ram
38k • written 1 day ago by
vasudhapai
• 0
3
votes
3
replies
226
views
Editing fasta headers
fasta
updated 1 day ago by
Ram
38k • written 1 day ago by
Zoe
• 0
0
votes
0
replies
124
views
Link products to their genes
RNA-SEQ
GO
edgeR
1 day ago by
Pegasus
▴ 80
0
votes
0
replies
119
views
Trajectory analysis using Monocle3 with Seurat sub-clustering
scRNA-seq
Trajectory
Seurat
analysis
Monocle3
1 day ago by
joonhong kwon
▴ 40
0
votes
0
replies
124
views
News:
The Canadian Bioinformatics Workshops are back for summer 2023
CBW
training
workshop
1 day ago by
bioinformatics.ca
• 0
0
votes
1
reply
171
views
Error parsing strand (?) from GFF line
assembly
updated 1 day ago by
cmdcolin
★ 2.9k • written 1 day ago by
hafiz.talhamalik
▴ 350
0
votes
3
replies
243
views
Sample size for population genetics
Population-genetics
sample-size
updated 1 day ago by
Jeremy Leipzig
21k • written 2 days ago by
zimmer.schweiz
• 0
1
vote
0
replies
136
views
List of Ongoing and Planned Long Read Sequencing studies?
long-read-sequencing
third-generation
updated 2 days ago by
Ram
38k • written 2 days ago by
Vincent Laufer
★ 2.5k
3
votes
8
replies
3.8k
views
counting the unmapped reads
RNA-Seq
updated 2 days ago by
chemkhi.ali13
• 0 • written 7.9 years ago by
fi1d18
★ 4.1k
0
votes
1
reply
156
views
SNP ID (rsID) to Chr no. and Position
Annotation
2 days ago by
Jewahir
• 0
0
votes
0
replies
125
views
how to plot distribution of SNPs across a set of genes based on distance between snp and gene
snp
genes
updated 2 days ago by
Ram
38k • written 2 days ago by
rheab1230
▴ 140
0
votes
0
replies
108
views
Reactome Species Comparison - analysis table
reactome
1 day ago by
a11msp
▴ 120
0
votes
1
reply
202
views
Discordinant aligment
Paired-end
HISAT2
updated 2 days ago by
Istvan Albert
97k • written 2 days ago by
ali
• 0
0
votes
1
reply
151
views
Using multimaping reads or unique reads on featurecounts?
featurecounts
HISAT2
updated 2 days ago by
GenoMax
127k • written 2 days ago by
omargmc.tak
• 0
0
votes
0
replies
117
views
News:
Next-Generation Sequencing Data Analysis: A Practical Introduction (May 3-5, 2023 in Munich, Germany)
NGS
DNA-Seq
calling
RNA-Seq
workshop
variant
2 days ago by
David Langenberger
9.9k
0
votes
1
reply
262
views
module and trait correlation for WGCNA
treatment
WGCNA
relation
microarray
module-treatment
updated 2 days ago by
andres.firrincieli
3.2k • written 3 days ago by
Shriyansh
• 0
3
votes
7
replies
257
views
1000 genomes hg38 with dbSNP rsid
1000genomes
dbsnp
updated 2 days ago by
Ram
38k • written 2 days ago by
Vince
▴ 150
0
votes
0
replies
98
views
How to import impute2.dosage files to analyse it in R (GWAS)
regression
GWAS
impute2
dosage
2 days ago by
Sebastian
• 0
5
votes
3
replies
423
views
What's the correct way to map to hg38 with alternative contigs?
NGS
bwa
2 days ago by
Belanov
▴ 10
6
votes
4
replies
182
views
Download NCBI compiled protein database for specific genus
protein
NCBI
updated 2 days ago by
GenoMax
127k • written 2 days ago by
saadleeshehreen
▴ 110
0
votes
0
replies
98
views
Michigan Imputation server failed job
michigan-imputation-server
vcf
updated 2 days ago by
Ram
38k • written 2 days ago by
Najla
• 0
0
votes
0
replies
97
views
MD simulation error
MD
schrodinger
updated 2 days ago by
Ram
38k • written 2 days ago by
mixmatchey
• 0
0
votes
0
replies
103
views
File has zero value indivuals
Haploview
updated 2 days ago by
Ram
38k • written 2 days ago by
Nai
▴ 50
0
votes
5
replies
352
views
Kallisto bustools for scRNA-seq
Kallisto
11 hours ago by
t.ru
▴ 20
0
votes
0
replies
134
views
KEGGList Error in R
KEGGList
2 days ago by
GiV17
▴ 50
0
votes
1
reply
218
views
How to analyze RepeatProteinMask results
RepeatProteinMask
2 days ago by
zijian
• 0
0
votes
1
reply
286
views
how to look at interaction between SNP and gene
SNP
Gene
Hi-C
updated 2 days ago by
Ram
38k • written 5 days ago by
rheab1230
▴ 140
1,000 results • Page
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Any tips in landing a bioinformatic job?
Answer: What is the NCBI's definition of an "atypical genome"?
Answer: What is the NCBI's definition of an "atypical genome"?
Comment: Integration of RNA seq data aligned to different reference genome versions
VCF file, calculate depth per sample
Comment: Snakemake doesn't recognize output files even though they are created
Comment: Analysing the Effect of a Drug on the Morphological Changes of a Cell Type
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Answer: What is the NCBI's definition of an "atypical genome"?
by
MirianT_NCBI
▴ 480
Hi, You can find more information about what constitute an [atypical genome in this FAQ][1]. Here's the list of reasons for a genome to …
Comment: How to get subset of a Seurat object based on metadata?
by
sunyeping
▴ 80
> skin$predicted_cell_type Error in rep.int(x = colnames(x = x), times = length(x = i)) : unimplemented type 'NULL' in 'rep3…
Comment: using CITE-seq data to cluster single cells
by
chi.delta
▴ 40
Let's say that based on known FACS data, I already know that three populations exist based on the two antibodies staining: single positive …
Answer: syntax errors when running part3 all-against-all
by
Adrian Altenhoff
★ 1.0k
Dear Sofia, this looks like the all-vs-all file is corrupted. maybe a race condition of to processes that tried to write the same file. …
Answer: Any tips in landing a bioinformatic job?
by
zhousun21
▴ 40
Since you are just starting out, I suggest sending your resume to a few recruiters who specialize in science placements. They will intervie…
Comment: How to get subset of a Seurat object based on metadata?
by
jv
★ 1.0k
Do you have cells labeled "0:CD8 T Cell" in `skin$predicted_cell_type`?
Comment: using CITE-seq data to cluster single cells
by
ATpoint
70k
Think about it, how would any clustering with only two genes/features be informative? Is this really what you need? If you break it down, f…
Comment: Module color label in WGCNA
by
kivanvan
• 0
Thank you!
Comment: How to get subset of a Seurat object based on metadata?
by
sunyeping
▴ 80
This command gives: Error: No cells found
Comment: Snakemake doesn't recognize output files even though they are created
by
DdogBoss
• 0
Ok, the rule is executed, but then it says the output files are missing. I simply don't understand why there is a disconnect there, even …
Comment: Analysing the Effect of a Drug on the Morphological Changes of a Cell Type
by
E-HR
• 0
Had not thought about these questions.
Comment: Analysing the Effect of a Drug on the Morphological Changes of a Cell Type
by
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2.2k
The linchpin is what features you are interested in; can you describe them in plain English? Something like "how many of the cells are mali…
Answer: How to get subset of a Seurat object based on metadata?
by
jv
★ 1.0k
You do not need to include `skin@meta.data[['predicted_cell_type']]` in your subset function. Try the following instead: ``` subset(ski…
Answer: Post-Imputation QC Problem
by
Jesse
• 0
This was an operator error. I realized that the error I was receiving was because of my use of the "--score" flag, which I did not need …
Answer: Module color label in WGCNA
by
andres.firrincieli
3.2k
`grey60` is a regular module
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