2
votes
3
replies
111
views
0
votes
1
reply
111
views
updated 20 hours ago by
ATpoint
82k
•
written 20 hours ago by
AaronJaime
•
0
0
votes
0
replies
109
views
0
votes
0
replies
109
views
updated 1 day ago by
Ram
43k
•
written 2 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
108
views
updated 3 days ago by
Ram
43k
•
written 3 days ago by
maxime.policarpo
▴
200
0
votes
0
replies
104
views
0
votes
0
replies
97
views
0
votes
0
replies
96
views
0
votes
0
replies
94
views
3 days ago by
ohtang7
▴
40
0
votes
0
replies
94
views
0
votes
0
replies
94
views
0
votes
0
replies
92
views
0
votes
0
replies
90
views
4 days ago by
Enrique
•
0
0
votes
0
replies
88
views
0
votes
0
replies
86
views
0
votes
0
replies
85
views
0
votes
0
replies
85
views
1
vote
0
replies
84
views
0
votes
0
replies
82
views
0
votes
0
replies
82
views
4 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
81
views
4 days ago by
Gerard
•
0
0
votes
0
replies
81
views
0
votes
0
replies
78
views
0
votes
1
reply
78
views
0
votes
0
replies
75
views
0
votes
0
replies
74
views
0
votes
0
replies
73
views
4 days ago by
kl
▴
10
0
votes
0
replies
73
views
4 days ago by
sativus
▴
20
0
votes
0
replies
73
views
updated 19 hours ago by
Ram
43k
•
written 23 hours ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
71
views
1 day ago by
synat.keam
▴
100
2
votes
0
replies
70
views
0
votes
0
replies
68
views
7 hours ago by
HarperReed
•
0
0
votes
0
replies
67
views
23 hours ago by
Emily
▴
10
0
votes
0
replies
63
views
1
vote
0
replies
50
views
0
votes
0
replies
49
views
0
votes
0
replies
49
views
10 hours ago by
Nargis
•
0
0
votes
0
replies
46
views
12 hours ago by
turcoa1
•
0
0
votes
0
replies
16
views
1 hour ago by
hagl
▴
10
0
votes
0
replies
11
views
31 minutes ago by
vanbelj
▴
40
Recent Votes
Recent Locations •
All
Bologna, just now
Russia, 1 minute ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 1 minute ago
France, 1 minute ago
Sheffield, UK, 3 minutes ago
Stony Brook University, NY, 4 minutes ago
Germany, 6 minutes ago
Recent Awards •
All
Popular Question to
BioinfGuru
★
1.7k
Popular Question to
vinayjrao
▴
250
Supporter to
Jalil Sharif
▴
80
Popular Question to
sil_bioinfo
▴
40
Popular Question to
sapuizait
▴
10
Recent Replies
Comment: Low mapping rate with Salmon
by
i.sudbery
19k
Take your STAR alignment and sum all the counts for each gene. You can either do this by providing an annotation to STAR, or by running fea…
Comment: How to convert plink files to Hapmap Format
by
bk11
★
2.4k
If you run your data with plink 2.0, you will have ERRCODE column in your result file showing the reason behind "NA" p-value.
https://www.b…
Comment: genome assembly records not present in assembly_summary.txt
by
sapuizait
▴
10
jesus its in the Genbank file and I was looking at the refseq! I m such a moron - thanks for pointing it out -sorry about that :(
Comment: ScRNA data question
by
bk11
★
2.4k
I wonder how the `Vlnplots` will look if you normalize the data using `NormalizeData()` function in `Seurat`. The flat line in your plot ar…
Comment: Low mapping rate with Salmon
by
GenoMax
141k
> Does that mean that the reads that are not mapped to my trascriptome are not exons/coding genes?
Reads are likely aligning in regions wh…
Comment: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
by
cmdcolin
★
3.8k
the gencode link is broken now but here is a back up of that blogpost on archive https://web.archive.org/web/20130618221342/http://gencodeg…
Comment: Low mapping rate with Salmon
by
Patadu94
•
0
I'll try to make the decoy file again but I remember you also told me that it is only recommended and not mandatory for running `salmon`. I…
Comment: Low mapping rate with Salmon
by
Patadu94
•
0
For doing this, should I just look at the log.out.file?
Answer: Heatmap and rna-seq
by
pinheirofabiano
▴
10
install.packages("pheatmap")
library(pheatmap)
setwd("/Users/data_analysis/results")
data <- read.table(file…
Comment: Low mapping rate with Salmon
by
Patadu94
•
0
Thanks for the link GenoMax. But I was wondering, should not alignment and mapping have a similar rate and thus be correlated? In my case I…
Answer: Create a new bed file with all pairwise combinations between two other bed files
by
Pierre Lindenbaum
161k
bedtools intersect \
-a <(sort -t $'\t' -k1,1 -k2,2n A.bed) \
-b <(awk '{X=250000;P=int($2);printf("%s\t%d\…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
•
0
The command lines I wrote out for you are the ones I actually used. My original reference to bedtools intersect was because I assumed the b…
Comment: ScRNA data question
by
starswillfade
▴
10
I just thought it was weird that considering each dot is a cell their expressions were all on a single line instead of being spread out lik…
Comment: ScRNA data question
by
starswillfade
▴
10
![enter image description here][1] I am already using Seurat V5 I think. I am using SCTransform as it was recommended by the seurat page. I…
Answer: genome assembly records not present in assembly_summary.txt
by
GenoMax
141k
Can you clarify what `metainfo` you are referring to?
The accession that you refer to does exist in [**GenBank assembly_summary file**][1…
Traffic: 3180 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6