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1,000 results • Page
6 of 20
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
127
views
Synteny analysis
bacterial
synteny
genome
updated 11 days ago by
GenoMax
142k • written 11 days ago by
Namil
• 0
0
votes
4
replies
279
views
Genbank File Format
gbkformat
10 days ago by
alenew.am
• 0
0
votes
5
replies
444
views
How should I make kallisto indexes?
kallisto
updated 11 days ago by
dsull
★ 6.0k • written 25 days ago by
bioinfo
▴ 150
0
votes
0
replies
246
views
Assist me in determining whether the analysis process using the limma package has been executed correctly
limma
ArrayExpress
DifferentialExpression
GEOquery
11 days ago by
SSSJec
• 0
0
votes
3
replies
234
views
Software to separate reads from different individuals
software
development
nanopore
updated 11 days ago by
GenoMax
142k • written 11 days ago by
njornet
▴ 20
0
votes
2
replies
279
views
How to update R on ubuntu
installation
update
R
apt-get
11 days ago by
Bosberg
▴ 50
4
votes
0
replies
146
views
Herald:
The Biostar Herald for Monday, April 29, 2024
herald
11 days ago by
Biostar
2.7k
1
vote
1
reply
155
views
Two references 1. genome 2. plasmid for bowtie2
WGS
BacterialGenomics
Alignment
updated 11 days ago by
GenoMax
142k • written 11 days ago by
Ruqaiya
• 0
0
votes
1
reply
280
views
Using Delly/Pindel/breakdancer for Identifying Transgene Insertion Sites in Mouse Genome
breakdancer
insertion
Pindel
variation
Delly
updated 11 days ago by
trausch
★ 1.9k • written 28 days ago by
zec018
• 0
0
votes
0
replies
115
views
LEfSe
LEfSe
11 days ago by
benkosta
• 0
0
votes
0
replies
94
views
How should I handle read counts derived from SGSeq when I want to build DEXSeqDataSet object
DEXSeq
DEXSeqDataSet
SGSeq
11 days ago by
Sara
▴ 30
1
vote
4
replies
424
views
Limma Analysis Agilent Microarray Data (GPL1708)
Microarray
Limma
Agilent
11 days ago by
hagl
▴ 10
0
votes
5
replies
331
views
RNAseq one control two conditions, shared and exclusive genes
conditions
RNAseq
multiple
Rstudio
updated 7 days ago by
Mohamed Abderrahmane
▴ 20 • written 11 days ago by
matteo.levorato
• 0
0
votes
2
replies
172
views
Longitudinal analysis of subpopulations: which approach is better?
differential-expression
DEG
model
11 days ago by
Lluís R.
★ 1.2k
0
votes
1
reply
154
views
How to solve DESeq2 Error in checkFullRank(modelMatrix)?
RNA-Seq
DESeq2
updated 11 days ago by
i.sudbery
19k • written 11 days ago by
DOBI
• 0
0
votes
0
replies
106
views
Comparing peptide sequences with MS/MS peptide data using MaxQuant
Transcriptomics
Mass
Bioinformatics
spectrometry
Proteins
11 days ago by
atharvakarkare14
▴ 30
7
votes
16
replies
787
views
How many reads for WGS Sequencing?
WGS
Bacterial-Genomics
11 days ago by
Ruqaiya
• 0
0
votes
2
replies
219
views
What should I consider as FASTA for dataset?
PDB
FASTA
11 days ago by
Nafi
• 0
38
votes
24
replies
2.0k
views
10 follow
NGS forensics: how to know if data is fabricated
fastq
STAR
NGS
Illumina
updated 10 days ago by
i.sudbery
19k • written 13 days ago by
noodle
▴ 580
0
votes
0
replies
600
views
Differential accessibility using DiffBinf
diffbind
11 days ago by
Shloka
• 0
0
votes
0
replies
103
views
vg call vs vg surject
vg
variation
graphs
updated 11 days ago by
GenoMax
142k • written 11 days ago by
aliraza3119
• 0
2
votes
2
replies
212
views
Can I merge Hi-C fastq files from different lanes?
GenomeAssembly
BWA-MEM2
Hi-C
updated 11 days ago by
GenoMax
142k • written 11 days ago by
Winter
• 0
2
votes
7
replies
1.3k
views
6 follow
Differential Expression using Isoseq-supplemented reference transcriptome
RNA-Seq
Salmon
Isoseq
updated 11 days ago by
Gordon Smyth
★ 7.1k • written 8 months ago by
Calum
▴ 10
0
votes
1
reply
222
views
Finding batch and outlayers
Pca
updated 11 days ago by
christopher medway
▴ 460 • written 11 days ago by
Tigran
• 0
2
votes
2
replies
215
views
PDB related issue
rcsb
pdb
updated 11 days ago by
noodle
▴ 580 • written 12 days ago by
Nafi
• 0
0
votes
0
replies
125
views
News:
Online course: Genome Annotation
Genome-Assembly
Genome-Annotation
11 days ago by
carlopecoraro2
★ 2.5k
0
votes
8
replies
463
views
What does it mean single base resolution in sequencing?
SNP
sequencing
updated 10 days ago by
LauferVA
4.2k • written 12 days ago by
jinyu
▴ 10
0
votes
9
replies
2.6k
views
6 follow
Cannot process all the reads in a fast5 file?
metagenome
base-calling
fastq
nanopore
updated 11 days ago by
Ram
43k • written 8 months ago by
Gio
• 0
2
votes
5
replies
505
views
Fetch table from clinvar database according to a list of rsid
python
clinvar
perl
12 days ago by
ashaneev07
▴ 20
1
vote
2
replies
244
views
Downloading full alignments from Pfam
pfam
5 days ago by
bef1
• 0
0
votes
1
reply
759
views
Can I run cellassign on samples independently if there is batch effect present?
RNA-Seq
R
cellassign
batch-effect
updated 12 days ago by
Francesco
▴ 10 • written 3.3 years ago by
gt
▴ 30
5
votes
2
replies
319
views
ChIP-seq datasets: input samples omitted?
ChIP-seq
Normalization
NGS
updated 11 days ago by
i.sudbery
19k • written 14 days ago by
vanbelj
▴ 40
0
votes
0
replies
126
views
adjusting for confounders in LMER in R
confounders
LMER
R
updated 11 days ago by
dariober
14k • written 12 days ago by
rene.j.erhardt
▴ 20
1
vote
3
replies
331
views
How to assign cell types after integration in scRNA
scRNA-seq
updated 12 days ago by
ATpoint
82k • written 13 days ago by
Francesco
▴ 10
0
votes
0
replies
146
views
STAR total splices (in Log.final) vs collapsed splice junctions (in SJ.out.tab)
STAR
13 days ago by
tnminh89
▴ 10
0
votes
0
replies
150
views
Filter low express genes in microarray data
microarray
13 days ago by
Chris
▴ 280
3
votes
3
replies
418
views
absolute path for symbolic links in Snakefile
Snakemake
updated 23 hours ago by
Jesse
▴ 770 • written 21 days ago by
yifangt86
▴ 60
2
votes
2
replies
383
views
Hide positions in alignment with 99% "–" characters to ignore single sequence insertions?
alignment
gaps
updated 13 days ago by
Jesse
▴ 770 • written 15 days ago by
Broccoli
• 0
4
votes
3
replies
412
views
Source other conda environments in a nextflow pipeline when nextflow itself is in a conda environment?
hpc
conda
nextflow
updated 13 days ago by
Arup Ghosh
3.2k • written 14 days ago by
chaco001
▴ 40
1
vote
3
replies
426
views
Help understanding how KEGG Ortholog `K00004 ` has 3 ECs associated with it (EC:1.1.1.4, 1.1.1.-, 1.1.1.303)?
ontology
metagenomics
database
enzymes
genomics
updated 12 days ago by
Mensur Dlakic
★ 27k • written 13 days ago by
O.rka
▴ 720
0
votes
2
replies
287
views
Correct way to compare multiple treaments between RNA-Seq samples using edgeR?
RNA-Seq
edgeR
13 days ago by
Guille
• 0
4
votes
1
reply
337
views
How to use limma to find differentially expressed genes in response to a continuous variable
limma
voom
R
11 days ago by
pairedttest
▴ 10
3
votes
6
replies
2.0k
views
7 follow
DNA methylation preprocessing
SWAN
DNA
methylation
Funnorm
updated 13 days ago by
Ram
43k • written 2.4 years ago by
SYOSY
▴ 10
0
votes
0
replies
581
views
Correlation between cell type prediction scores and individual gene expression in spatial transcriptomic datasets
single-cell
Spatial-Transcriptomics
14 days ago by
biocellbio
• 0
4
votes
8
replies
739
views
Create a new bed file with all pairwise combinations between two other bed files, based on bp distance
SNPs
BED
eqtl
bedtools
updated 13 days ago by
Alex Reynolds
35k • written 14 days ago by
J
▴ 10
4
votes
7
replies
772
views
7 follow
Heatmap and rna-seq
RNA-Seq
Heatmap
updated 13 days ago by
dsull
★ 6.0k • written 17 days ago by
qudrat.nii
▴ 10
19
votes
11
replies
14k
views
10 follow
How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
utr
updated 14 days ago by
cmdcolin
★ 3.8k • written 10.8 years ago by
J.F.Jiang
▴ 920
3
votes
2
replies
365
views
what is the purpose of indexing the reference genome (Kallisto)
indexing
Kallisto
updated 14 days ago by
dsull
★ 6.0k • written 14 days ago by
Aaliya
▴ 10
3
votes
0
replies
228
views
News:
Webinar “Learning Single-cell Atlases” with Dr. Fabian Theis, author of Scanpy on May 8
Scanpy
Generative-AI
scRNA
Machine-Learning
updated 14 days ago by
Ram
43k • written 14 days ago by
Claire Watson
▴ 60
0
votes
2
replies
319
views
Rare Disease Variant Pathway Analysis
Pathway-analysis
updated 14 days ago by
Ram
43k • written 14 days ago by
The_PyPanda
▴ 10
1,000 results • Page
6 of 20
Recent Votes
Comment: what is another word for a BLAST "hit"?
Comment: what is another word for a BLAST "hit"?
Comment: How can I merge GFF files together to produce a file with gene functions from bo
Comment: Contig assembly task, errors
Comment: Where to get the following bed file?
Comment: Truncated metadata file report from ENA Portal API
Comment: How to format "I" and "D" in vcf version 4.2 for liftover analysis in GATK
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Recent Replies
Answer: what is another word for a BLAST "hit"?
by
dec986
▴ 370
I'll probably go with "matches" even though it doesn't sound as good as just "hit"
Comment: what is another word for a BLAST "hit"?
by
bk11
★ 2.4k
> hits from BLAST hits sequences
Comment: what is another word for a BLAST "hit"?
by
Pierre Lindenbaum
161k
> is there a synonym for hits from BLAST? alignment
Comment: How are score_weights calculated in this code?
by
Ram
43k
Is this ALL the context you can give us?
Comment: Genome Assembly task + Protein Translation, assignment advice on a question
by
Ram
43k
Where did you copy-paste this from? It looks like an assignment question.
Comment: Contig assembly task, errors
by
rackbersingh
• 0
Hi Phillip, Thanks for sharing you knowledge and funnily enough this really was an amplitude test, but anyways your sharing of knowledge h…
Comment: Can I readmap short reads to rDNA references?
by
GenoMax
142k
If these are short reads and the organisms are related then you are going to have a difficult time classifying the reads.
Comment: extract viral protein of interest from 10k whole viral genomes
by
GenoMax
142k
With a large dataset it is always best to do the search locally (or in the cloud, if you don't have necessary hardware available locally).
Comment: Truncated metadata file report from ENA Portal API
by
Giulia
• 0
Thank you so much for your hint! I'll look into this!
Comment: How to convert Haps file to vcf file?
by
curious
▴ 750
unzip haps then: bin/shapeit \ -convert \ --input-haps {haps_prefix} \ --thread {cpus} \ --output-…
Comment: Can I readmap short reads to rDNA references?
by
aniigodwinn
• 0
Still on this, the reads are from org a, org b, and environmental contaminants. I have a fairly good idea what org b might be but i need to…
Comment: fastq screen aligner no specified.
by
Ximena
• 0
Thank u so much, my OS is linux. I will try your advice.
Comment: In IGV is this a heterogeneous mutation or false call?
by
Tuck898
• 0
No worries, I can completely appreciate that. I am having investigations similar to a condition causes by the RYR2 gene and was wondering i…
Comment: In IGV is this a heterogeneous mutation or false call?
by
Pierre Lindenbaum
161k
> RYR1 underneath although I was originally looking at the RYR2 gene. Sorry to sound stupid but does this make sense to what I've previousl…
Comment: In IGV is this a heterogeneous mutation or false call?
by
Tuck898
• 0
When click the blat it brings me to chr19 and mentions the RYR1 underneath although I was originally looking at the RYR2 gene. Sorry to sou…
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