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1,000 results • Page
1 of 20
Sort: Rank
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Views
Votes
Replies
0
votes
0
replies
5
views
How to make "Custom annotation File" for GO analysis using TOPgo
enrichment
GO
analysis
TOPGO
30 minutes ago by
hellokwmin
• 0
0
votes
0
replies
12
views
topGO error :KS elim test
KS
topGO
enrichment
-elim
analysis
1 hour ago by
Priya Rao
• 0
1
vote
1
reply
86
views
Best way to visualize .paf or .sam alignment to a fasta file
visualization
sam
fasta
paf
alignment
updated 7 hours ago by
GenoMax
127k • written 9 hours ago by
Mark
• 0
0
votes
0
replies
58
views
Problem when downloading dataset from ArrayExpress
Bioconductor
ArrayExpress
9 hours ago by
cogen859
• 0
0
votes
2
replies
100
views
using CITE-seq data to cluster single cells
clustering
cite-seq
k-means
10x
9 hours ago by
chi.delta
▴ 40
0
votes
0
replies
54
views
Extract cluster genes
fasta
extract
cluster
10 hours ago by
BATMAN
• 0
1
vote
2
replies
106
views
Analysing the Effect of a Drug on the Morphological Changes of a Cell Type
drug-effect
statistical-analysis
6 hours ago by
E-HR
• 0
3
votes
1
reply
90
views
Why not use ONLY promoter-bound peaks when testing for enrichment in differentially-bound regions?
ChIP-seq
ChIPseeker
GO
updated 10 hours ago by
Ram
38k • written 12 hours ago by
e.r.zakiev
▴ 30
0
votes
0
replies
58
views
Clustering method for CT values of two group
PCA
Clustering
bioconductor
R
12 hours ago by
Maria17
▴ 10
1
vote
1
reply
77
views
Integration of RNA seq data aligned to different reference genome versions
scRNA-seq
RNA-seq
updated 12 hours ago by
Ram
38k • written 13 hours ago by
susibing
▴ 20
0
votes
0
replies
53
views
UK BioBank HLA imputation
ukbb
hla
imputation
13 hours ago by
hla_help
• 0
0
votes
0
replies
54
views
ABSOLUTE for tumour purity with WES
tumour-purity
ABSOLUTE
WES
updated 14 hours ago by
Ram
38k • written 14 hours ago by
Cvlind
• 0
1
vote
4
replies
166
views
Suggestion for approaching multiple conditions scRNA-seq
scRNA-seq
13 hours ago by
Eisuan
▴ 20
2
votes
2
replies
136
views
STAR solo set parameters for scrna-seq
solo
STAR
18 hours ago by
t.ru
▴ 20
1
vote
3
replies
155
views
mpileup to sync file
AF
samtools
selection
vcf
popoolation
updated 20 hours ago by
Pierre Lindenbaum
153k • written 21 hours ago by
qstefano
▴ 20
0
votes
1
reply
119
views
Quality control of Chip-seq data (NRF and PCB)
control
library
quality
PCB
Chip-seq
NRF
updated 13 hours ago by
Darked89
4.2k • written 21 hours ago by
michelafrancesconi9
• 0
0
votes
2
replies
2.7k
views
demultiplexing with guppy_basecaller and guppy_barcoder using --detect_mid_strand_adapter --detect_mid_strand_barcodes produce > 90% of unclassified …
demultiplexing
guppy
16 hours ago by
andres.firrincieli
3.2k
1
vote
2
replies
173
views
Snakemake doesn't recognize output files even though they are created
python
Snakemake
10 hours ago by
DdogBoss
• 0
0
votes
0
replies
83
views
GO analysis using diamond blastp output
blastp
GO
analysis
Diamond
23 hours ago by
hellokwmin
• 0
0
votes
0
replies
94
views
Diffbind: how to get raw read counts and normalized read counts
Diffbind
rawcount
1 day ago by
soda
▴ 40
0
votes
0
replies
92
views
Error at phase 4 when running GeMoMa (homology-based annotation)
Homology
GeMoMa
Annotation
Genome
1 day ago by
breannar
• 0
0
votes
5
replies
255
views
featureCounts problem in reading Gff
featureCounts
GFF
RNA-seq
updated 1 day ago by
Ram
38k • written 1 day ago by
Beatrice
• 0
0
votes
1
reply
125
views
Time change in expression vs time change in phenotype
RNA-Seq
DGE
DESeq2
1 day ago by
Ivan
• 0
0
votes
0
replies
79
views
How to perform a gsva assessing for the directonality of the genes.
gsva
1 day ago by
roybatty269
• 0
7
votes
7
replies
507
views
Nextflow rnaseq finishing early
RNA-seq
nextflow
updated 1 day ago by
Ram
38k • written 1 day ago by
Raygozak
★ 1.4k
0
votes
0
replies
77
views
calculation of calibration factors using impuation reference panel and ethnicity
GWAS
Calibration
factor
1 day ago by
parveenkayenat
• 0
1
vote
4
replies
223
views
Artificial reads - remove multiple mapped reads against reference genome, and only keep reads that completely match without any mismatches - samtools
samtools
18 hours ago by
Agamemnon
▴ 60
0
votes
0
replies
79
views
Haploview linkage format .ped and .info file error
plink
Haploview
vcftool
1 day ago by
Nai
▴ 50
0
votes
0
replies
115
views
How to export GWAS lists available in Open Targets database
GWAS
gene
openTargets
17 hours ago by
dzisis1986
▴ 60
0
votes
0
replies
113
views
Bcftools consensus generates mismatched consensus sequence
Consensus
sequence
1 day ago by
Duy
• 0
0
votes
0
replies
79
views
Is there a function to get the number of aligned sites between pairs of sequences in a multiple sequence alignment in R?
msa
R
1 day ago by
audrey
• 0
0
votes
0
replies
100
views
Nucleotide substitution model and neighbor-joining tree
phylogeny
substitution
mega
neighbor-joining
modeltest
18 hours ago by
poecile.pal
▴ 50
0
votes
0
replies
99
views
Octopus advanced vcf guide: Example of overlapping vcf calls with *
vcf
spanning
alleles
octopus
1 day ago by
penington.j
• 0
0
votes
0
replies
117
views
how can we improve genome assembly levels ? from contig to complete using bioinformatics pipelines?
contig
genome
pipelines
assembly
updated 1 day ago by
Ram
38k • written 1 day ago by
vasudhapai
• 0
0
votes
0
replies
124
views
Link products to their genes
RNA-SEQ
GO
edgeR
2 days ago by
Pegasus
▴ 80
0
votes
0
replies
119
views
Trajectory analysis using Monocle3 with Seurat sub-clustering
scRNA-seq
Trajectory
Seurat
analysis
Monocle3
2 days ago by
joonhong kwon
▴ 40
0
votes
1
reply
172
views
Error parsing strand (?) from GFF line
assembly
updated 1 day ago by
cmdcolin
★ 2.9k • written 2 days ago by
hafiz.talhamalik
▴ 350
1
vote
0
replies
137
views
List of Ongoing and Planned Long Read Sequencing studies?
long-read-sequencing
third-generation
updated 2 days ago by
Ram
38k • written 2 days ago by
Vincent Laufer
★ 2.5k
0
votes
1
reply
159
views
SNP ID (rsID) to Chr no. and Position
Annotation
2 days ago by
Jewahir
• 0
0
votes
0
replies
125
views
how to plot distribution of SNPs across a set of genes based on distance between snp and gene
snp
genes
updated 2 days ago by
Ram
38k • written 2 days ago by
rheab1230
▴ 140
0
votes
0
replies
108
views
Reactome Species Comparison - analysis table
reactome
1 day ago by
a11msp
▴ 120
0
votes
1
reply
153
views
Using multimaping reads or unique reads on featurecounts?
featurecounts
HISAT2
updated 2 days ago by
GenoMax
127k • written 2 days ago by
omargmc.tak
• 0
0
votes
0
replies
98
views
How to import impute2.dosage files to analyse it in R (GWAS)
regression
GWAS
impute2
dosage
2 days ago by
Sebastian
• 0
0
votes
0
replies
98
views
Michigan Imputation server failed job
michigan-imputation-server
vcf
updated 2 days ago by
Ram
38k • written 2 days ago by
Najla
• 0
0
votes
0
replies
97
views
MD simulation error
MD
schrodinger
updated 2 days ago by
Ram
38k • written 2 days ago by
mixmatchey
• 0
0
votes
0
replies
103
views
File has zero value indivuals
Haploview
updated 2 days ago by
Ram
38k • written 2 days ago by
Nai
▴ 50
0
votes
6
replies
382
views
Kallisto bustools for scRNA-seq
Kallisto
updated 6 hours ago by
dsull
★ 4.0k • written 2 days ago by
t.ru
▴ 20
0
votes
0
replies
135
views
KEGGList Error in R
KEGGList
2 days ago by
GiV17
▴ 50
0
votes
0
replies
122
views
GATK VariantAnnotator -A PossibleDeNovo
VariantAnnotator
GATK
2 days ago by
zihanss
• 0
0
votes
4
replies
733
views
MapSplice2 gives error if the thread count (-p value) is greater than 2
Mapsplice2
fusion_candidates
updated 2 days ago by
GenoMax
127k • written 20 months ago by
nkmalini97
• 0
1,000 results • Page
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Recent Votes
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Comment: GO enrichment analysis
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Hi Ming Untrimmed reads have 76bp in average.
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The following is the correct code gtf_43<-rtracklayer::import('gencode.v43.primary_assembly.annotation.gtf') dtgtf_43<-data.frame(gtf_4…
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Hello, thanks for replying, by mistake I paste the wrong code. the following is the corrected gtf_43<-rtracklayer::import('gencode.v43…
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I have no idea what that is besides a bunch of jumbled sequences. You'll need look up the structure of the reads / library from wherever yo…
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