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News: course - GENOME ASSEMBLY USING OXFORD NANOPORE SEQUENCING
Long-reads Assembly Nanopore Genome
9 months ago by carlopecoraro2 ★ 2.4k
0
votes
0
replies
271
views
News: Online training - VERSION CONTROL FOR RESEARCHERS
Version Control Git Github
9 months ago by carlopecoraro2 ★ 2.4k
0
votes
1
reply
352
views
News: Research Training In NGS Data Analysis
analysis data-analysis
updated 10 months ago by 40k • written 10 months ago by • 0
0
votes
0
replies
372
views
News: Bayesian regression modeling in R course
RegressionModeling Bayesian R
10 months ago by carlopecoraro2 ★ 2.4k
0
votes
0
replies
332
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News: Genome Assembly and Annotation course
Annotation Nanopore GenomeAssembly Pacbio
10 months ago by carlopecoraro2 ★ 2.4k
3
votes
0
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1.1k
views
News: Changes to the default NCBI BLAST nucleotide database (nt). Learn more and provide feedback!
NCBI Databases BLAST
10 months ago by PeterC_NCBI ▴ 330
0
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0
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320
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News: Nextflow online training
Nextflow Workflow Reproducibility
updated 9 months ago by 40k • written 10 months ago by ★ 2.4k
0
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2
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1.1k
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News: :: FINAL CALL :: Next-Generation Sequencing Data Analysis: A Practical Introduction (December 12-14, 2022 in Munich, Germany)
rnaseq dnaseq sequencing ngs workshop
10 months ago by David Langenberger 10k
0
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0
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374
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News: The Association for Single Cell Analysis (ASCA)
genomics singlecell metabolomics sequencing proteomics
10 months ago by dnsv.ev • 0
0
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0
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350
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News: Deep Learning in Population Genomics and Phylogeography
DeepLearning Phylogeography PopulationGenomics
10 months ago by carlopecoraro2 ★ 2.4k
0
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0
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354
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News: Metabarcoding in Microbial Ecology Workshop
Qiime2 R Metabarcoding Microbial-Ecology
11 months ago by carlopecoraro2 ★ 2.4k
1
vote
2
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508
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News: Gene Set Enrichment Analysis in R/Bioconductor
Gene-Set-Enrichment-Analysis R Cancer-Genomics GSEA
11 months ago by carlopecoraro2 ★ 2.4k
0
votes
0
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317
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News: Analysis of RNA sequencing data with R/Bioconductor course.
Bioconductor RNAseq R
11 months ago by carlopecoraro2 ★ 2.4k
0
votes
0
replies
471
views
News: Winter School in Bioinformatics
course workshop
updated 9 months ago by 40k • written 11 months ago by ★ 2.4k
1
vote
0
replies
395
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News: Introduction to Nextflow
Nextflow
updated 9 months ago by 40k • written 11 months ago by ★ 2.4k
0
votes
2
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583
views
News: Seascape Genomics in R
Genomics Seascape R
updated 9 months ago by 40k • written 11 months ago by ★ 2.4k
0
votes
0
replies
300
views
News: Bioinformatics courses in November
Bioconductor Genomics R
updated 9 months ago by 40k • written 11 months ago by ★ 2.4k
0
votes
0
replies
699
views
News: Flow cytometry analysis with R/Bioconductor course
Bioconductor R Cytometry Flow
11 months ago by carlopecoraro2 ★ 2.4k
0
votes
0
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308
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News: course: RNA-seq analyses in non-model organisms
differential Bioconductor RNAseq expression non-model organisms analysis R
11 months ago by carlopecoraro2 ★ 2.4k
0
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0
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326
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News: course - Developing R/Bioconductor packages for genomics
developing package Bioconductor Genomics R
11 months ago by carlopecoraro2 ★ 2.4k
2
votes
0
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360
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News: Four NCBI workshops in October (BLAST, Primer-BLAST, Metagenome analysis, Structures in iCn3D)
metagenomics MagicBLAST BLAST NCBI Primer-BLAST
11 months ago by PeterC_NCBI ▴ 330
0
votes
0
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484
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News: course - Unix and shell scripting for bioinformatics
bash Shell-scripting Unix
updated 9 months ago by 40k • written 12 months ago by ★ 2.4k
0
votes
0
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357
views
News: course: Data Visualization in Python
Visualisation Python Data
updated 12 months ago by 134k • written 12 months ago by ★ 2.4k
0
votes
0
replies
340
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News: Seascape Genomics in R course
Genomics R Seascape Population
12 months ago by carlopecoraro2 ★ 2.4k
0
votes
0
replies
418
views
News: Cellosaurus API
line cell API
12 months ago by Amos Bairoch ▴ 110
0
votes
0
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350
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News: Cellosaurus release 43 is available
cellosaurus cell-line
updated 9 months ago by 40k • written 12 months ago by ▴ 110
0
votes
0
replies
299
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News: Genomics Webinar: Using Mastermind’s New ClinVar Integration to Accelerate Clinical Diagnoses
variant-interpretation genomics database webinar
updated 9 months ago by 40k • written 12 months ago by • 0
0
votes
0
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275
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News: course: Population Genomic Inference from Low-coverage Whole-genome Sequencing Data
whole-genome genomics population low-coverage sequencing
updated 12 months ago by 21k • written 12 months ago by ★ 2.4k
0
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0
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290
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News: :: FINAL CALL :: RNA-Seq Data Analysis Workshop (October 25 - 28, 2022 in Leipzig, Germany) - 2 seats left
RNA-Seq workshop transcriptomics
12 months ago by David Langenberger 10k
0
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0
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265
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News: Getting the most out of R course - last call
ggplot2 R tidyverse
12 months ago by carlopecoraro2 ★ 2.4k
0
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0
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362
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News: The NCTR Indel Calling from Oncopanel Sequencing Data Challenge Winners have been announced!
FDA-challenge
updated 9 months ago by 40k • written 12 months ago by ▴ 10
1
vote
0
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336
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News: Webinar (free) on Multimodal Single-Cell Data from winner of NeurIPS 2021
ATAC-seq CITE-seq scRNA-seq
12 months ago by Alexander ▴ 200
1
vote
0
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321
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News: course Reproducible Analysis With R
R Reproducibility analysis Data
12 months ago by carlopecoraro2 ★ 2.4k
0
votes
0
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350
views
News: Virtual Genome Assembly workshop
Genome Workshop assembly Virtual
12 months ago by singh.vijender ▴ 70
10
votes
4
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790
views
News: Good morning
good morning
updated 12 months ago by 98k • written 12 months ago by 86k
6
votes
7
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3.5k
views
News: New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
DiffBind ChIP-seq deepTools visualization ATAC-seq
12 months ago by Rory Stark ★ 2.0k
0
votes
0
replies
363
views
News: Sex Chromosome Evolution course
course Genomics
updated 9 months ago by 40k • written 13 months ago by ★ 2.4k
0
votes
0
replies
310
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News: Online training - Data visualization in R with ggplot2
Visualization ggplot2 R Data
13 months ago by carlopecoraro2 ★ 2.4k
1
vote
0
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409
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News: Searching for people who can share experience (give free webinars/discuss) on multimodal single cell data
ATAC-seq CITE-seq scRNA-seq
13 months ago by Alexander ▴ 200
0
votes
0
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325
views
News: Online training - Introduction to Deep Learning for biologists
Python DeepLearning bigdata MachineLearning
13 months ago by carlopecoraro2 ★ 2.4k
0
votes
0
replies
506
views
News: 2023 EMBL Courses and Conferences
EMBL EMBLMalaria EESImaging
13 months ago by EMBL Events • 0
0
votes
0
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339
views
News: Online training -Getting the most out of R
R Science analysis Data
13 months ago by carlopecoraro2 ★ 2.4k
0
votes
0
replies
358
views
News: Online training - Cancer Genomics in R
Cancer Genomics R
updated 9 months ago by 40k • written 13 months ago by ★ 2.4k
0
votes
0
replies
328
views
News: Online training - DNA methylation in plants and animals
OxfordNanopore DNAMethylation BSseq longreads PacBio
13 months ago by carlopecoraro2 ★ 2.4k
0
votes
0
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352
views
News: 3rd edition of the Analysis of RNA sequencing data with R/Bioconductor course.
RNAseq Bioconductor R
14 months ago by carlopecoraro2 ★ 2.4k
4
votes
1
reply
2.1k
views
News: 2014 ISCB Wikipedia Article Competition announcement
ISCB competition Wikipedia
written 9.2 years ago by ★ 2.0k
1
vote
2
replies
720
views
News: Online training - Introduction to Nextflow
Bionfirmatics Pipeline Workflow Netflow
13 months ago by carlopecoraro2 ★ 2.4k
4
votes
1
reply
516
views
News: Online Course - A Practical Introduction to NGS Data Analysis (September 26-28, 2022)
workshop ngs data-analysis
updated 14 months ago by 40k • written 14 months ago by 10k
0
votes
0
replies
428
views
News: Final Call! Tomorrow (7/8) is the Deadline for Phase 1 submissions of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel indel-calling
updated 9 months ago by 40k • written 14 months ago by ▴ 10
0
votes
0
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401
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News: Automate your NGS data analyses and create reproducible/scalable pipelines with NextFlow
pipeline Nextflow automation
15 months ago by David Langenberger 10k
1,000 results • Page 4 of 20
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Comment: ncbi error report log for validate fastq issue
Comment: ncbi error report log for validate fastq issue
A: Bowtie2 MAPQ difference using local vs end-to-end alignment
C: Bowtie2 MAPQ difference using local vs end-to-end alignment
Answer: TPM RNA-seq data for differential expression analysis
A: Error When Installing Emboss
Answer: Subclustering of intergated cells from scRNA-seq data
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Comment: Assessing Rockhopper's output by shelkmike ▴ 980
I used Rockhopper only for bacterial genomes assembled into circular contigs or circular scaffolds.
Comment: Unable to install HorvathMammalMethylChip40manifest packages by ATpoint 77k
There is no package of that name in CRAN or Bioconductor. Where do you have it from, so which tutorial you follow?
Comment: Subclustering of intergated cells from scRNA-seq data by fifty_fifty ▴ 60
thank you. This is exactly what I was looking for
Answer: Search RCSB with a list of protein names? by Mensur Dlakic ★ 25k
This is not the most elegant solution, but it should work with previous suggestions. In this remote directory: http://ftp.wwpdb.org/p…
Answer: Automate the Splitting of a VCF File by Sample (bcftools) by Ram 40k
The manual says you can split samples out at once using the `+split` plugin. So, `bcftools +split -Oz -o <PATH> file.vcf.gz` should do the …
Comment: differences between trajectories in conditions with Monocle3 or other tools by Amitm ★ 2.2k
Phate (or Monocle) doesn't do UMAP. If you have done UMAP already (using seurat) then you could use the cell barcode to UMAP cluster label …
Comment: Error: cannot open file 2 for reading From Cufflinks Version 2.2.1 When Attempti by Y • 0
I figured out how to make it work. The bams have to be comma separated not just by space: cd "${input_directory_with_associated_bam_fi…
Comment: Search RCSB with a list of protein names? by Joseph • 0
Hey, this is so close to what I'm looking for - I clarified in my edit. This is a great way to batch download lots of PDBs in RCSB by their…
Comment: Search RCSB with a list of protein names? by Joseph • 0
This is a really neat package, but I don't think it does exactly what I want, so I've clarified my question. This seems like it grabs a PD…
Comment: How to get the gft file to run velocyto for velocity analysis? by Chris ▴ 200
Yes, thank you! I figured it out but I got an error: velocyto run10x -m Hg38_rmsk.gtf WT/outs /cellranger/reference/refdata-cellranger…
Comment: How to get the gft file to run velocyto for velocity analysis? by bk11 ★ 1.3k
You can get from here- [UCSC][1]. Just click on get output botton. [1]: https://genome.ucsc.edu/cgi-bin/hgTables?hgsid=611454127_NtvlaW…
Answer: Search RCSB with a list of protein names? by bk11 ★ 1.3k
You can use `Bio3D` an R Package for this. [http://thegrantlab.org/bio3d_v2/tutorials/installing-bio3d][1] [http://thegrantlab.org/b…
Comment: Search RCSB with a list of protein names? by GenoMax 134k
You can download various types of bulk data files from RCSB here: https://www.rcsb.org/docs/programmatic-access/file-download-services You…
Comment: How to perform hypothesis testing on contingency tables and compare with the nul by RK • 0
Thank you so much
Comment: How to perform hypothesis testing on contingency tables and compare with the nul by Jean-Karim Heriche 26k
So just do a regular chi-squared test as I explained above. The null hypothesis is that there are as many mutated/unmutated trinucleotides …
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