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906 results • Page 5 of 19
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News: New web BLAST default parameters and search limits are now in place at NCBI
www-blast blast ncbi
updated 11 months ago by 43k • written 3.9 years ago by 142k
0
votes
2
replies
1.1k
views
News: Training - Introduction to Deep Learning
Deep-Learning Machine-Learning Python-Programming
updated 10 months ago by 43k • written 3.8 years ago by ★ 2.5k
1
vote
0
replies
720
views
News: Training - Data visualization in R with ggplot2
R Dataviz ggplot2
updated 10 months ago by 43k • written 3.7 years ago by ★ 2.5k
1
vote
0
replies
437
views
Spam: Research Training in Next-Generation Sequencing Data Analysis.
RNA-Seq ChIP-Seq
updated 10 months ago by 43k • written 3.7 years ago by 10
1
vote
0
replies
1.3k
views
News: Pan-Structural Variation hackathon in the Cloud (Remote hackathon)
structural-variants sequencing
updated 10 months ago by 43k • written 3.7 years ago by 9.7k
1
vote
0
replies
799
views
News: Announcing the Genetic Engineering Attribution Challenge!
machine-learning data-science competition
updated 10 months ago by 43k • written 3.7 years ago by ▴ 10
0
votes
0
replies
831
views
News: :: FINAL CALL :: Only 2 seats left - RNA-Seq Data Analysis Workshop for Beginners in Leipzig, Germany
NGS RNA-Seq transcriptomics
updated 10 months ago by 43k • written 3.8 years ago by 11k
0
votes
0
replies
650
views
News: Software: BIRCH Bioinformatics System 3.70
alignment Assembly sequence genome RNA-Seq
updated 10 months ago by 43k • written 3.8 years ago by ▴ 460
0
votes
0
replies
801
views
News: Training - Introduction to Bioinformatics for beginners
assembly SNP RNA-Seq sequencing
updated 10 months ago by 43k • written 3.8 years ago by ★ 2.5k
0
votes
0
replies
755
views
News: Training in Computational Drug Design and Discovery @NIH
Computational-Biology RNA-Seq Drug-Design Biomedical
updated 11 months ago by 43k • written 3.8 years ago by ▴ 140
0
votes
0
replies
656
views
News: Upcoming online UC Davis Bioinformatics Core workshops
Assembly RNA-Seq single-cell
updated 11 months ago by 43k • written 3.8 years ago by ▴ 30
0
votes
0
replies
869
views
News: Training - RADseq data analysis
SNP RADseq Stacks
updated 11 months ago by 43k • written 3.8 years ago by ★ 2.5k
0
votes
0
replies
830
views
News: Training in Bioinformatics for Beginners @ NIH
NGS Biomedical Training Biomedical-Informatics
updated 11 months ago by 43k • written 3.8 years ago by ▴ 140
0
votes
0
replies
728
views
News: Training in Creating Plots, Graphs and Maps using R @ NIH
R-Platform RGraphs Biomedical NGS
updated 11 months ago by 43k • written 3.8 years ago by ▴ 140
6
votes
7
replies
2.2k
views
News: NCBI wants to remove quality scores from SRA
quality-scores trimming Assembly genome SRA
updated 11 months ago by 43k • written 3.8 years ago by ▴ 40
0
votes
0
replies
800
views
News: Cellosaurus release 35 is available
knowledgebase cell-line
updated 11 months ago by 43k • written 3.8 years ago by ▴ 120
0
votes
0
replies
959
views
News: NGS Data Analysis Trainings (Classroom and Online)
RNA-Seq Training DNA-Seq
updated 11 months ago by 43k • written 3.8 years ago by 11k
0
votes
0
replies
822
views
News: Summer School in Bioinformatics (ONLINE, 7th-11th September 2020)
Assembly sequence genome SNP RNA-Seq
updated 11 months ago by 43k • written 3.9 years ago by ★ 2.5k
0
votes
0
replies
1.1k
views
News: ONLINE COURSE. Eukaryotic genome assembly USING Pacbio and Hi-C
assembly pacbio long-reads HI-C
updated 11 months ago by 43k • written 3.9 years ago by ★ 2.5k
0
votes
0
replies
917
views
News: A Practical Introduction to NGS Data Analysis - America Online Edition
NGS workshop DNA-Seq
updated 11 months ago by 43k • written 3.9 years ago by 11k
0
votes
0
replies
656
views
News: Course on Deep Learning
Deep-Learning Machine-Learning Python
updated 11 months ago by 43k • written 3.9 years ago by ★ 2.5k
2
votes
0
replies
670
views
News: Webinar in next hour : Updated BLAST RefSeq rRNA databases for identification and phylogenetic analysis
blast
updated 11 months ago by 43k • written 3.9 years ago by 142k
0
votes
0
replies
527
views
News: Final Reminder for the precisionFDA Truth Challenge V2 Submissions
genome
updated 11 months ago by 43k • written 3.9 years ago by ▴ 150
0
votes
0
replies
799
views
News: Statistical Computing for Environmental Science with R and Rstudio
Rstudio online-course R-project statistics
updated 11 months ago by 43k • written 3.9 years ago by ▴ 70
0
votes
0
replies
770
views
News: Introduction to Bayesian Inference in Practice
statistics MCMC R Bayesian Python
updated 11 months ago by 43k • written 3.9 years ago by ▴ 70
1
vote
0
replies
834
views
News: Utrecht Bioinformatics Center: online seminars
DNA-damage Utrecht epigenomics
updated 11 months ago by 43k • written 3.9 years ago by ▴ 230
1
vote
0
replies
1.1k
views
News: ONLINE COURSE Introduction to R for ecologists and evolutionary biologists (IRFB04) This course will be delivered live
R
updated 11 months ago by 43k • written 3.9 years ago by ▴ 110
1
vote
3
replies
1.2k
views
News: 4th Berlin Summer School in NGS Data Analysis - October 5-9, 2020
NGS RNA-Seq DNA-Seq
updated 11 months ago by 43k • written 4.2 years ago by 11k
0
votes
0
replies
603
views
News: Extension Announcement for the precisionFDA Truth Challenge V2
genome
updated 11 months ago by 43k • written 3.9 years ago by ▴ 150
2
votes
0
replies
572
views
News: Introduction to NGS data analysis - ONLINE 7th-11th September 2020
Assembly RNA-Seq next-gen-sequencing
updated 11 months ago by 43k • written 3.9 years ago by ★ 2.5k
0
votes
0
replies
738
views
News: Last chance to register for online RNA-Seq Workshop June 1-4
RNA-Seq
updated 11 months ago by 43k • written 3.9 years ago by ▴ 30
0
votes
0
replies
744
views
News: Training in Bioinformatic Analysis of Next Generation Sequencing Data@NIH
RNA-Seq Biomedical next-gen
updated 11 months ago by 43k • written 3.9 years ago by ▴ 140
2
votes
0
replies
676
views
News: Introduction to Deep Learning; ONLINE 28th September - 1st October
Machine-Learning Deep-Learning Python
updated 11 months ago by 43k • written 4.0 years ago by ★ 2.5k
2
votes
0
replies
667
views
News: Online course - low-coverage whole-genome sequencing data analysis
SNP
updated 11 months ago by 43k • written 4.0 years ago by ★ 2.5k
0
votes
0
replies
664
views
News: Training in Molecular Modeling and Molecular Dynamics @NIH, July 21 - 24, 2020
Dynamics RNA-Seq Modeling next-gen
updated 11 months ago by 43k • written 4.0 years ago by ▴ 140
0
votes
0
replies
751
views
News: Training in Programming for Biomedical Researchers @NIH, July 14 - 17, 2020
Researchers Biomedical Programming
updated 11 months ago by 43k • written 4.0 years ago by ▴ 140
2
votes
0
replies
705
views
News: Interested in Machine Learning?
Machine-Learning R
updated 11 months ago by 43k • written 4.0 years ago by ★ 2.5k
1
vote
0
replies
846
views
News: Ensembl launches COVID-19 resource
genome coronavirus COVID-19 ensembl SARS-CoV-2
updated 11 months ago by 43k • written 4.0 years ago by ▴ 330
0
votes
0
replies
585
views
News: The Veterans Health Administration (VHA) Innovation Ecosystem and precisionFDA are launching the COVID-19 Risk Factor Modeling Challenge on June 1st
R
updated 11 months ago by 43k • written 4.0 years ago by ▴ 150
8
votes
8
replies
2.9k
views
News: Coronavirus Genome Analysis: a new volume in the Biostar Handbook
biostar-handbook education
updated 11 months ago by 43k • written 4.2 years ago by 100k
0
votes
0
replies
794
views
News: Training in Statistical Analysis using R @NIH, July 8 - 10, 2020
R Biomedical next-gen Statistical-analysis
updated 11 months ago by 43k • written 4.0 years ago by ▴ 140
0
votes
0
replies
514
views
News: New Datasets Available and Extension Announcement for the precisionFDA Truth Challenge V2
R
updated 11 months ago by 43k • written 4.0 years ago by ▴ 150
2
votes
4
replies
1.2k
views
News: Course ONLINE - RNAseq data analysis with R and Bioconductor (15-19 June)
R RNA-seq Bioconductor
updated 11 months ago by 43k • written 4.0 years ago by ★ 2.5k
0
votes
0
replies
726
views
News: Training in Rosetta for Molecular Modeling and Design @NIH,June 22-25,2020
Data-analysis Modeling RNA-Seq Molecular-design
updated 11 months ago by 43k • written 4.0 years ago by ▴ 140
0
votes
0
replies
724
views
News: Intermediate Python for Bioinformatics 2020
python data-analysis
updated 11 months ago by 43k • written 4.0 years ago by • 0
0
votes
0
replies
699
views
News: One Week Reminder for the precisionFDA Gaining New Insights by Detecting Adverse Event Anomalies Using FDA Open Data Challenge
R
updated 11 months ago by 43k • written 4.0 years ago by ▴ 150
0
votes
0
replies
715
views
News: Training in Advanced Transcriptomics (RNA-Seq) Analysis@NIH, June 9-12,2020
RNA-Seq Biomedical next-gen
updated 11 months ago by 43k • written 4.0 years ago by ▴ 140
0
votes
0
replies
663
views
News: Training in Variant Analysis@NIH,June 2-5, 2020
Variant-analysis Genotype Variant-calling next-gen
updated 11 months ago by 43k • written 4.0 years ago by ▴ 140
0
votes
0
replies
678
views
News: Gene Ontology Virtual User Meeting
Ontology GO Enrichment Gene-Ontology
updated 11 months ago by 43k • written 4.0 years ago by • 0
0
votes
0
replies
570
views
News: Check Out The Upcoming Federal Crowdsourcing Webinar Series: A precisionFDA Strike for Public Health
genome
updated 11 months ago by 43k • written 4.0 years ago by ▴ 150
906 results • Page 5 of 19
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A: Fold change - a final explanation
Answer: sc/snRNASeq using cell ranger parameters
mitochondria in single nuclear RNAseq
Answer: Association study using SNP data
Comment: agilent human all exon sureselct v7 bed file
Answer: install package
Comment: Overlap File for RACON Genome Polisher
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Recent Replies
Answer: STRING-DB API can't find my protein but I can find it when I go to the STRING-DB by Pierre Lindenbaum 161k
first get the main ID in stringdb: $ wget -qO - "https://string-db.org/api/tsv-no-header/get_string_ids?identifiers=RPS4Y1&species=960…
Comment: Help with DGEList function by marco.barr ▴ 90
Are you sure you've loaded the library properly? Have you checked if edgeR is ticked in the list of installed packages? Double-check it. If…
Comment: Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so t by mropri ▴ 150
Hi, I just wanted to update that IEGscore and PCNAscore were linearly dependent (or linear combinations of each other). I tested this using…
Comment: TaxID mapping file by Lada ▴ 30
if I understood correctly, I might need fle `prot.accession2taxid.gz` file? According to the [documentation][1] in column 2 is Accession.ve…
Answer: install package by Pine ▴ 10
To follow on Mathew's reply, one way might be to try and see if you can download and install the package tarball locally: 1. Get the packag…
Comment: agilent human all exon sureselct v7 bed file by MiladAD ▴ 10
God bless you man.
Answer: install package by Mathew ▴ 50
Hi, This is what happens when I run some code to diagnose the issue. First, I wanted to see what version of R was required for the package…
Comment: TaxID mapping file by Lada ▴ 30
thank you, I'll look at these files/documents. .
Answer: LD-prune variants while maintaining a list of SNPs by Jautis ▴ 540
I was given a solution by a colleague -- it seems a little hacky, but worked really well! > one way to get this to work is to use --clu…
Answer: Association study using SNP data by drajangirija • 0
Hi Matthew, Thank you very much for your inputs. I am working with Neogen genotyping data, which includes GC values less than 0.15.
Comment: Downloading full alignments from Pfam by bef1 • 0
I tried contacting Pfam, they replied that indeed there is an issue on their side with the full alignments, which should be repaired in the…
Comment: Seeking Bioinformatics/Drug Design Opportunities - PhD in Pharmacology with Expe by Mensur Dlakic ★ 27k
Don't know about others, but I would never contact someone about potential employment based only on their interests and with zero knowledge…
Comment: The GDC Legacy Archive is retiring soon. by Zhenyu Zhang ★ 1.2k
If you are talking about methylation idat files, they were all migrated from legacy to the data portal. If you are talking about other pl…
Comment: How to access TCGA samples that were treated with a specific drug? by Zhenyu Zhang ★ 1.2k
These TCGA samples were taken 10 ~ 20 years ago, and there is no way they have been treated by the modern immunotherapy. Are you sure tha…
Comment: Design matrix Differential expression analysis by Gordon Smyth ★ 7.1k
> When is it recommended to use the design <- cbind(Intercept=1,Group=c(-1,-1,-1,1,1,1)) It is not recommended. No such code appears anywh…
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