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900 results • Page
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News:
Online course Python Machine Learning in Biology, November 16, 2023
machine-learning
python
course
updated 6 months ago by
Ram
43k • written 6 months ago by
Sole
• 0
122
votes
44
replies
11k
views
24 follow
News:
Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
meta
biostars
updated 6 months ago by
Ram
43k • written 11.4 years ago by
Istvan Albert
100k
0
votes
0
replies
382
views
News:
Bioinformatics Phoenix
web-server
updated 6 months ago by
Ram
43k • written 6 months ago by
garyargraves
• 0
1
vote
0
replies
323
views
News:
Course - Developing R/Bioconductor Packages for Genomics
R
package-development
Genomics
Bioconductor
updated 6 months ago by
Ram
43k • written 6 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
322
views
News:
Course -Metabarcoding in Microbial Ecology
R
Qiime2
Microbial-Ecology
Metabarcoding
updated 6 months ago by
Ram
43k • written 6 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
355
views
News:
Become a Bioinformatics Pro: Easy Understanding Starts Here
Structural-Bioinformatics
updated 6 months ago by
Ram
43k • written 6 months ago by
sriv.reetesh
• 0
0
votes
0
replies
376
views
News:
Course - Flow Cytometry analysis with R/Bioconductor
R
Flow-Cytometry
Bioconductor
updated 6 months ago by
Ram
43k • written 6 months ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
1.1k
views
News:
FINAL CALL - Workshop - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (November 8-10, 2023 in Berlin)
workshop
RNA-Seq
scRNA-Seq
single-cell
6 months ago by
David Langenberger
11k
0
votes
1
reply
839
views
News:
FINAL CALL: Online Course - A Practical Introduction to NGS Data Analysis - October 23-25, 2023
DNA-seq
Workshop
RNA-seq
6 months ago by
David Langenberger
11k
0
votes
0
replies
412
views
News:
Course - Metabolomics in R/Bioconductor
R
Data-Analysis
Metabolomics
Bioconductor
updated 6 months ago by
Ram
43k • written 6 months ago by
carlopecoraro2
★ 2.5k
13
votes
9
replies
2.6k
views
7 follow
News:
Inviting NEW Biostars moderators to join Biostars slack channel
slack
moderator
6 months ago by
GenoMax
141k
0
votes
0
replies
372
views
News:
Cellosaurus release 47 is available
cellosauraus
cell-line
biocuration
knowledgebase
updated 6 months ago by
Ram
43k • written 6 months ago by
Amos Bairoch
▴ 120
0
votes
0
replies
333
views
News:
Course: Seascape Genomics in R course
R
GEA
Seascape-Genomics
Adaptation-Genomics
updated 6 months ago by
Ram
43k • written 6 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
347
views
News:
Course :MACHINE LEARNING - A HANDS-ON INTRODUCTION IN R
R
Statistical-Learning
Omics
Machine-Learning
updated 6 months ago by
Ram
43k • written 6 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
471
views
News:
Course - Gene Set Enrichment Analysis in R/Bioconductor
Gene-Set-Enrichment-Analysis
GSEA
R
Genomics
Bioconductor
updated 6 months ago by
Ram
43k • written 6 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
360
views
News:
New NCBI Datasets APIs to Replace Old Ones
NCBI
API
Datasets
7 months ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
397
views
News:
RADseq data analysis course
RADseq
Phylogenomics
Stacks
Population-Genomics
6 months ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
619
views
News:
EMBL-EBI virtual course | Introduction to RNA-seq and functional interpretation
RNA-seq
updated 7 months ago by
Ram
43k • written 7 months ago by
Rebecca
• 0
1
vote
0
replies
409
views
News:
Online Training - Bioinformatics Pipeline Development with Nextflow (November 15-17, 2023)
nextflow
automation
pipeline
development
7 months ago by
David Langenberger
11k
2
votes
1
reply
463
views
News:
Successful NCBI NIAID Codeathon on VCF Files in SARS-CoV-2 Genomics
NCBI
Codeathon
updated 7 months ago by
chrchang523
10k • written 7 months ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
365
views
News:
Research Breakthrough in Identifying Viral Escape Mutations for Improved Therapeutic Design
sequence-analysis
sars-cov-2
spike-protein
updated 7 months ago by
Ram
43k • written 7 months ago by
Prem
• 0
0
votes
0
replies
354
views
News:
Course: Data Manipulation and Visualisation with Python
Python
Data-Visualization
Data-Manipulation
updated 7 months ago by
Ram
43k • written 7 months ago by
carlopecoraro2
★ 2.5k
0
votes
2
replies
924
views
News:
The Practice of RADseq: Population Genomics Analysis with Stacks (RADS02) Early bird deadline approaching - 20th September
population-genomics
radseq
stacks
updated 7 months ago by
Dave Carlson
★ 1.7k • written 7 months ago by
oliverhooker
▴ 110
0
votes
0
replies
347
views
News:
Course - GLMMs in R
GLMM
Mixed-Models
updated 7 months ago by
Ram
43k • written 7 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
358
views
News:
Introduction to Nextflow (2 seats left)
Nextflow
Workflow
Reproducibility
updated 7 months ago by
Ram
43k • written 7 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
419
views
News:
Genomic Prediction course
Genomic-Prediction
GWAS
updated 6 months ago by
Ram
43k • written 7 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
451
views
News:
course - Population Genomics Using Ancient DNA Data
Genomics
aDNA
Population-Genomics
updated 6 months ago by
Ram
43k • written 7 months ago by
carlopecoraro2
★ 2.5k
3
votes
5
replies
1.3k
views
News:
Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl
GTF
updated 7 months ago by
alejandrogzi
▴ 120 • written 17 months ago by
dlaehnemann
▴ 30
0
votes
0
replies
391
views
News:
NCBI ClinVar XML update to accommodate somatic variants
SNP
XML
ClinVar
NCBI
3 months ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
303
views
News:
Workshop on Virtual Screening on Drug Discovery from scratch (15-16 September, 2023 : 07.00 - 09.00 PM IST)
workshop
virtual-screening
updated 6 months ago by
Ram
43k • written 7 months ago by
sriv.reetesh
• 0
0
votes
0
replies
334
views
News:
RNAseq data analysis with R/Bioconductor
R
RNA-seq
Bioconductor
updated 6 months ago by
Ram
43k • written 7 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
347
views
News:
Course - RNAseq in non-model organisms
R
Differential-Expression-Analysis
RNA-seq
Bioconductor
updated 6 months ago by
Ram
43k • written 7 months ago by
carlopecoraro2
★ 2.5k
4
votes
2
replies
595
views
News:
Standalone NCBI ClusteredNR database now available for download
ClusteredNR
NCBI
standalone
BLAST
7 months ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
353
views
News:
Virtual Variant Detection Workshop: September 11-14, 2023
tutorial
detection
genomics
workshop
variant
7 months ago by
mia.nahom
▴ 10
0
votes
0
replies
317
views
News:
Introduction to Deep Learning for Biologists course
Python
Deep-Learning
Machine-Learning
updated 7 months ago by
Ram
43k • written 7 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
354
views
News:
Course - Reproducibility Data Analysis with R
R
renv
Version-Control
Reproducibility
updated 6 months ago by
Ram
43k • written 7 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
442
views
News:
Online course: Easily analyze single cell RNA-seq data with Cellenics®, a user-friendly web-based platform
scRNA-seq
training
single-cell-RNA-seq
updated 7 months ago by
Ram
43k • written 7 months ago by
Sara
• 0
0
votes
0
replies
495
views
News:
Join Our Online Course: Incorporating Paleogenomes into Evolutionary Genomics Studies
Paleogenomics
Genomics
aDNA
Adaptation-Genomics
updated 7 months ago by
Ram
43k • written 7 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
383
views
News:
Course on Phylogenomics
Phylogenetic-Inference
Divergence-Time-Estimation
Genomics
Phylogenomics
updated 7 months ago by
Ram
43k • written 7 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
395
views
News:
Course. -Multivariate Data Analysis with R and vegan
R
vegan
MultivariateDataAnalysis
8 months ago by
carlopecoraro2
★ 2.5k
3
votes
2
replies
737
views
News:
NCBI BLAST+ 2.14.1 Now Available
NCBI
BLAST
8 months ago by
PeterC_NCBI
▴ 410
1
vote
0
replies
303
views
News:
Course - Introduction to CRISPR
CRISPR
Evolution
GenomeEditing
8 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
323
views
News:
Upcoming Learning Opportunities and Important Updates
R
Programming
aDNA
Paleogenomics
8 months ago by
carlopecoraro2
★ 2.5k
3
votes
5
replies
2.3k
views
News:
(18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge
gene-ontology
CAFA
protein
8 months ago by
Alexander
▴ 220
1
vote
0
replies
416
views
News:
Spatial Omics course
Spatial-Omics
Multiplexed-Image-Analysis
updated 6 months ago by
Ram
43k • written 8 months ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
458
views
News:
Generalized Additive Models in R
R
GAMs
Courses
8 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
353
views
News:
NIAID Data Ecosystem Discovery Portal
databases
data
opendata
api
8 months ago by
ehaag
▴ 20
0
votes
0
replies
493
views
News:
Course - Structural Variant detection and comparison
SVs
Structural-Variants
updated 8 months ago by
Ram
43k • written 8 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
376
views
News:
course -Developing R/Bioconductor Packages for Genomics
R
Genomics
Bioconductor
updated 8 months ago by
Ram
43k • written 8 months ago by
carlopecoraro2
★ 2.5k
4
votes
3
replies
1.0k
views
News:
You may need to cleanup duplicate NCBI BLAST nt database volumes on your system
databases
NCBI
BLAST
8 months ago by
PeterC_NCBI
▴ 410
900 results • Page
3 of 18
Recent Votes
A: Blast Settings For Short Sequences
A: Blast Settings For Short Sequences
Comment: Heatmap and rna-seq
Answer: Heatmap and rna-seq
Comment: Heatmap and rna-seq
A: should FASTA files be sorted before indexed with SAMtools?
Answer: A faidx-indexed FASTA format file or a FASTA format file
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chaco001
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GenoMax
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Recent Replies
Answer: Correct way to compare multiple treaments between RNA-Seq samples using edgeR?
by
Gordon Smyth
★ 7.0k
The comparison you've done seems exactly right to test whether treatment 2 modifies or enhances the effect of treatment 1. Have you exam…
Answer: How to use limma to find differentially expressed genes in response to a continu
by
Gordon Smyth
★ 7.0k
There's no need for form a contrast because the score variable is already in the model. A continuous variable is its own contrast. Just run…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
▴ 10
Oh wow, bedops closest-features, how did I overlook that!! I didn't know about it; thank you! Your awk script is beautiful. This worked per…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
▴ 10
Thank you Pierre! I'll try this out with my full data set.
Answer: DNA methylation preprocessing
by
cao510927
▴ 30
I happend to see one paper doing the similar thing, share it with you guys, "A systematic evaluation of normalization methods and probe rep…
Answer: Create a new bed file with all pairwise combinations between two other bed files
by
Alex Reynolds
35k
I think Pierre's answer might be correct for your test input, but it doesn't account for the start position of the reference element and so…
Comment: Highest variable features in single cell data
by
bk11
★ 2.4k
You need to be clear about how `Seurat` defines highly variable genes here. Highly variable genes are the genes that have very high express…
Comment: Heatmap and rna-seq
by
GenoMax
141k
Please include a link when you are recommending a tool. There can be programs with similar names.
Answer: Heatmap and rna-seq
by
dsull
★ 5.8k
Check out clustergrammer from Avi Ma'ayan's lab.
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
by
Ram
43k
Simple: ```r data <- lapply(files, read_tsv) data <- Reduce(merge, data) # or Reduce(full_join, data) ``` <a href="" title="Text added bec…
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ATpoint
82k
You can make each process use a dedicated environment, see https://www.nextflow.io/docs/latest/conda.html#use-existing-conda-environments …
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
by
BioinfGuru
★ 1.7k
Hi, Just thought I'd share this code snippet here for when each file contains multiple samples. I tried using lapply (as suggested by Ram)…
Comment: Low mapping rate with Salmon
by
i.sudbery
19k
Take your STAR alignment and sum all the counts for each gene. You can either do this by providing an annotation to STAR, or by running fea…
Comment: How to convert plink files to Hapmap Format
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bk11
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If you run your data with plink 2.0, you will have ERRCODE column in your result file showing the reason behind "NA" p-value. https://www.b…
Comment: genome assembly records not present in assembly_summary.txt
by
sapuizait
▴ 10
jesus its in the Genbank file and I was looking at the refseq! I m such a moron - thanks for pointing it out -sorry about that :(
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