updated 10 months ago by
Ram
43k
•
written 4.3 years ago by
carlopecoraro2
★
2.5k
2
votes
0
replies
758
views
2
votes
1
reply
2.0k
views
2
votes
3
replies
1.7k
views
updated 11 months ago by
Ram
43k
•
written 6.2 years ago by
Chris Fields
★
2.2k
2
votes
0
replies
644
views
updated 10 months ago by
Ram
43k
•
written 4.7 years ago by
carlopecoraro2
★
2.5k
2
votes
0
replies
703
views
updated 10 months ago by
Ram
43k
•
written 3.9 years ago by
carlopecoraro2
★
2.5k
2
votes
3
replies
2.1k
views
updated 11 months ago by
Ram
43k
•
written 6.8 years ago by
Pine Biotech
▴
70
2
votes
0
replies
1.7k
views
updated 11 months ago by
Ram
43k
•
written 4.8 years ago by
carlopecoraro2
★
2.5k
2
votes
0
replies
114
views
16 days ago by
Transmitting Science communication
▴
70
2
votes
0
replies
1.0k
views
updated 11 months ago by
Ram
43k
•
written 4.9 years ago by
carlopecoraro2
★
2.5k
2
votes
0
replies
841
views
2
votes
1
reply
1.1k
views
updated 11 months ago by
Ram
43k
•
written 5.6 years ago by
stephens_sarah
▴
150
2
votes
0
replies
936
views
updated 10 months ago by
Ram
43k
•
written 4.7 years ago by
carlopecoraro2
★
2.5k
2
votes
2
replies
1.4k
views
updated 11 months ago by
Ram
43k
•
written 5.9 years ago by
ivivek_ngs
★
5.2k
2
votes
0
replies
721
views
updated 11 months ago by
Ram
43k
•
written 4.8 years ago by
carlopecoraro2
★
2.5k
2
votes
0
replies
850
views
updated 11 months ago by
Ram
43k
•
written 5.0 years ago by
stephens_sarah
▴
150
2
votes
0
replies
613
views
updated 10 months ago by
Ram
43k
•
written 4.3 years ago by
carlopecoraro2
★
2.5k
2
votes
2
replies
522
views
4 months ago by
carlopecoraro2
★
2.5k
2
votes
0
replies
959
views
News:
GWAS course in Canada
updated 11 months ago by
Ram
43k
•
written 5.2 years ago by
carlopecoraro2
★
2.5k
2
votes
0
replies
519
views
updated 10 months ago by
Ram
43k
•
written 4.0 years ago by
carlopecoraro2
★
2.5k
2
votes
0
replies
970
views
updated 11 months ago by
Ram
43k
•
written 5.1 years ago by
Devon Ryan
104k
2
votes
0
replies
1.5k
views
updated 11 months ago by
Ram
43k
•
written 4.8 years ago by
Pierre Lindenbaum
161k
2
votes
0
replies
3.0k
views
updated 11 months ago by
Ram
43k
•
written 5.3 years ago by
Istvan Albert
100k
2
votes
1
reply
461
views
updated 7 months ago by
chrchang523
10k
•
written 7 months ago by
PeterC_NCBI
▴
410
2
votes
0
replies
1.6k
views
2
votes
0
replies
730
views
2
votes
0
replies
4.3k
views
2
votes
0
replies
916
views
updated 11 months ago by
Ram
43k
•
written 4.8 years ago by
carlopecoraro2
★
2.5k
2
votes
0
replies
1.3k
views
updated 11 months ago by
Ram
43k
•
written 6.2 years ago by
pwrose.ucsd
▴
50
2
votes
0
replies
1.2k
views
updated 11 months ago by
Ram
43k
•
written 6.8 years ago by
patriciareneecarter
▴
90
2
votes
0
replies
2.3k
views
updated 11 months ago by
Ram
43k
•
written 6.6 years ago by
oliverhooker
▴
60
2
votes
0
replies
1.3k
views
updated 10 months ago by
Ram
43k
•
written 4.3 years ago by
carlopecoraro2
★
2.5k
2
votes
0
replies
1.1k
views
2
votes
0
replies
673
views
updated 10 months ago by
Ram
43k
•
written 3.9 years ago by
carlopecoraro2
★
2.5k
2
votes
0
replies
817
views
updated 10 months ago by
Ram
43k
•
written 4.1 years ago by
carlopecoraro2
★
2.5k
2
votes
0
replies
543
views
updated 10 months ago by
Ram
43k
•
written 4.2 years ago by
carlopecoraro2
★
2.5k
2
votes
0
replies
697
views
updated 10 months ago by
Ram
43k
•
written 4.2 years ago by
carlopecoraro2
★
2.5k
2
votes
1
reply
1.7k
views
updated 11 months ago by
Ram
43k
•
written 5.1 years ago by
David Langenberger
11k
2
votes
0
replies
2.0k
views
updated 11 months ago by
Ram
43k
•
written 7.1 years ago by
oliverhooker
▴
110
2
votes
2
replies
1.6k
views
2
votes
0
replies
3.3k
views
2
votes
1
reply
671
views
2
votes
0
replies
70
views
2
votes
0
replies
1.3k
views
updated 11 months ago by
Ram
43k
•
written 6.0 years ago by
Dave Clements
▴
610
2
votes
0
replies
1.3k
views
2
votes
0
replies
799
views
updated 11 months ago by
Ram
43k
•
written 4.9 years ago by
carlopecoraro2
★
2.5k
2
votes
0
replies
542
views
9 months ago by
Marcel Ribeiro-Dantas
▴
470
2
votes
6
replies
2.9k
views
2
votes
0
replies
1.1k
views
updated 10 months ago by
Ram
43k
•
written 4.8 years ago by
Edinburgh Genomics Training
▴
40
2
votes
1
reply
1.6k
views
updated 11 months ago by
Ram
43k
•
written 6.7 years ago by
natasha.pavlovikj
▴
10
1
vote
0
replies
856
views
Recent Votes
Recent Locations •
All
College Station, TX, just now
USA, 1 minute ago
France, 3 minutes ago
France, 3 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 4 minutes ago
UCLA, 5 minutes ago
United States, 7 minutes ago
Recent Awards •
All
Popular Question to
BioinfGuru
★
1.7k
Popular Question to
vinayjrao
▴
250
Supporter to
Jalil Sharif
▴
80
Popular Question to
sil_bioinfo
▴
40
Popular Question to
sapuizait
▴
10
Recent Replies
Comment: Low mapping rate with Salmon
by
i.sudbery
19k
Take your STAR alignment and sum all the counts for each gene. You can either do this by providing an annotation to STAR, or by running fea…
Comment: How to convert plink files to Hapmap Format
by
bk11
★
2.4k
If you run your data with plink 2.0, you will have ERRCODE column in your result file showing the reason behind "NA" p-value.
https://www.b…
Comment: genome assembly records not present in assembly_summary.txt
by
sapuizait
▴
10
jesus its in the Genbank file and I was looking at the refseq! I m such a moron - thanks for pointing it out -sorry about that :(
Comment: ScRNA data question
by
bk11
★
2.4k
I wonder how the `Vlnplots` will look if you normalize the data using `NormalizeData()` function in `Seurat`. The flat line in your plot ar…
Comment: Low mapping rate with Salmon
by
GenoMax
141k
> Does that mean that the reads that are not mapped to my trascriptome are not exons/coding genes?
Reads are likely aligning in regions wh…
Comment: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
by
cmdcolin
★
3.8k
the gencode link is broken now but here is a back up of that blogpost on archive https://web.archive.org/web/20130618221342/http://gencodeg…
Comment: Low mapping rate with Salmon
by
Patadu94
•
0
I'll try to make the decoy file again but I remember you also told me that it is only recommended and not mandatory for running `salmon`. I…
Comment: Low mapping rate with Salmon
by
Patadu94
•
0
For doing this, should I just look at the log.out.file?
Answer: Heatmap and rna-seq
by
pinheirofabiano
▴
10
install.packages("pheatmap")
library(pheatmap)
setwd("/Users/data_analysis/results")
data <- read.table(file…
Comment: Low mapping rate with Salmon
by
Patadu94
•
0
Thanks for the link GenoMax. But I was wondering, should not alignment and mapping have a similar rate and thus be correlated? In my case I…
Answer: Create a new bed file with all pairwise combinations between two other bed files
by
Pierre Lindenbaum
161k
bedtools intersect \
-a <(sort -t $'\t' -k1,1 -k2,2n A.bed) \
-b <(awk '{X=250000;P=int($2);printf("%s\t%d\…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
•
0
The command lines I wrote out for you are the ones I actually used. My original reference to bedtools intersect was because I assumed the b…
Comment: ScRNA data question
by
starswillfade
▴
10
I just thought it was weird that considering each dot is a cell their expressions were all on a single line instead of being spread out lik…
Comment: ScRNA data question
by
starswillfade
▴
10
![enter image description here][1] I am already using Seurat V5 I think. I am using SCTransform as it was recommended by the seurat page. I…
Answer: genome assembly records not present in assembly_summary.txt
by
GenoMax
141k
Can you clarify what `metainfo` you are referring to?
The accession that you refer to does exist in [**GenBank assembly_summary file**][1…
Traffic: 3180 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6