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1,000 results • Page 5 of 20
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News: ONLINE TRAINING: Environmental Metagenomics
metagenomics nanopore assembly illumina
updated 3 months ago by 39k • written 2.4 years ago by ★ 2.3k
2
votes
0
replies
585
views
News: ONLINE TRAINING - Web Applications Development with R Shiny
Shiny R
updated 3 months ago by 39k • written 2.4 years ago by ★ 2.3k
0
votes
0
replies
578
views
News: Online Training - An introduction to Nanopore direct RNA Sequencing - last 2 places left
RNA-Seq Nanopore
updated 3 months ago by 39k • written 2.4 years ago by ★ 2.3k
2
votes
0
replies
679
views
News: Online training - Computational Bayesian methods using brms in R
Bayesian-Statistics R
updated 3 months ago by 39k • written 2.5 years ago by ★ 2.3k
0
votes
0
replies
612
views
News: ONLINE training - Eukaryotic Metabarcoding
eDNA Metabarcoding
updated 3 months ago by 39k • written 2.5 years ago by ★ 2.3k
0
votes
0
replies
741
views
News: New columns added to the web BLAST Descriptions Table including taxonomic info and sequence length
ncbi blast
updated 3 months ago by 39k • written 2.5 years ago by 129k
2
votes
0
replies
748
views
News: Nanopore direct RNA Sequencing course
RNA-Seq Nanopore
updated 3 months ago by 39k • written 2.5 years ago by ★ 2.3k
0
votes
0
replies
1.2k
views
News: Online training - Proteomics in R and Bioconductor
Bioconductor R Proteomics
updated 3 months ago by 39k • written 2.6 years ago by ★ 2.3k
0
votes
0
replies
659
views
News: Are Online Trainings for NGS Data Analysis as Effective as In-person Workshops?
DNA-Seq Workshop RNA-Seq
updated 3 months ago by 39k • written 2.6 years ago by 9.9k
0
votes
0
replies
621
views
News: Cellosaurus release 36 is available
knowledgebase cell-line
updated 3 months ago by 39k • written 2.6 years ago by ▴ 110
8
votes
1
reply
2.5k
views
News: An Interesting Article On Bioinformatics Education With Some Press For Biostar
meta biostars
updated 3 months ago by 39k • written 9.8 years ago by 11k
0
votes
0
replies
665
views
News: Online Training: Epigenomics
ChIP-Seq next-gen RNA-Seq
updated 3 months ago by 39k • written 2.6 years ago by ★ 2.3k
1
vote
0
replies
717
views
News: UniProt survey: Tell us what protein information is important to you
uniprot proteome genome
updated 3 months ago by 39k • written 2.6 years ago by ★ 2.2k
0
votes
0
replies
567
views
News: dbSNP/ALFA Video and Live Event (October 29, 2020 at 12noon EST)
genome SNP
updated 3 months ago by 39k • written 2.6 years ago by ▴ 70
1
vote
0
replies
1.1k
views
News: NCBI Web BLAST now offers RefSeq Select databases for faster searches and better results
blast
updated 3 months ago by 39k • written 2.6 years ago by 129k
0
votes
0
replies
735
views
News: Online Training - GENOME-WIDE PREDICTION OF COMPLEX TRAITS IN HUMANS, PLANTS AND ANIMALS
sequencing genome
updated 3 months ago by 39k • written 2.6 years ago by ★ 2.3k
2
votes
0
replies
689
views
News: Get Ensembl training, virtually
ensembl training
updated 3 months ago by 39k • written 2.6 years ago by 23k
0
votes
0
replies
1.0k
views
News: Online Training - Nanopore direct RNA Sequencing
RNA-Seq Nanopore
updated 3 months ago by 39k • written 2.7 years ago by ★ 2.3k
0
votes
0
replies
659
views
News: rPHG v0.1.11 Updates
rphg
updated 3 months ago by 39k • written 2.6 years ago by • 0
1
vote
0
replies
633
views
News: Interested in Genome Assembly using long-reads?
assembly Nanopore PacBio
updated 3 months ago by 39k • written 2.6 years ago by ★ 2.3k
1
vote
0
replies
610
views
News: Making molecular data FAIR for ML
ml fair molecular-data
updated 3 months ago by 39k • written 2.6 years ago by ▴ 270
5
votes
2
replies
4.3k
views
News: GeneSCF (Gene Enrichment Tool): Advice to users
kegg GeneSCF GO annotation
updated 3 months ago by 39k • written 6.4 years ago by 7.5k
0
votes
0
replies
695
views
News: Training - Genome Assembly with Pacbio and HIC data
Assembly assembly
updated 3 months ago by 39k • written 2.7 years ago by ★ 2.3k
2
votes
0
replies
2.4k
views
News: Primer-BLAST can now design primers for a group of related target sequences!
primer-blast blast
updated 3 months ago by 39k • written 2.7 years ago by 129k
3
votes
1
reply
576
views
News: Ensembl Pre! site retirement - 31st January 2021
Ensembl
updated 3 months ago by 39k • written 2.7 years ago by ★ 2.2k
0
votes
0
replies
541
views
News: Online training - NGS analysis for gene regulation and epigenomics
ChIP-Seq Epigenomics genome next-gen R
updated 3 months ago by 39k • written 2.7 years ago by ★ 2.3k
0
votes
0
replies
741
views
News: Register now for online PacBio Iso-Seq workshop
pacbio iso-seq
updated 3 months ago by 39k • written 2.7 years ago by ▴ 30
1
vote
0
replies
1.2k
views
News: Release 1.11 of HTSlib, SAMtools and BCFtools
bcftools samtools htslib
updated 3 months ago by 39k • written 2.7 years ago by 154k
0
votes
0
replies
1.1k
views
News: Online Course - A Practical Introduction to NGS Data Analysis (Dec 9 - 11, 2020) - 5 seats left
DNA-Seq Workshop RNA-Seq
updated 3 months ago by 39k • written 2.7 years ago by 9.9k
0
votes
0
replies
780
views
News: DNA Methylation Data Analysis Workshop - 2-5 November 2020 in Berlin
NGS workshop bisulfite-seq
updated 3 months ago by 39k • written 2.7 years ago by 9.9k
2
votes
2
replies
536
views
News: Free online seminars/journal club
seminars journal-clubs
updated 12 weeks ago by 39k • written 2.9 years ago by ▴ 40
6
votes
13
replies
1.5k
views
News: Ensembl reduced functionality: 10th March-16th April 2020
Ensembl VEP BLAT service News
9 months ago by Ben_Ensembl ★ 2.2k
0
votes
0
replies
471
views
News: Live webinar (Feb 12 at 12PM Eastern): variant calling for bench scientists
variant-calling wgs wes
updated 11 weeks ago by 39k • written 3.3 years ago by • 0
8
votes
2
replies
688
views
News: Save time and money through improved onboarding of your NGS data scientists
NGS data-analysis
updated 10 weeks ago by 39k • written 3.4 years ago by 9.9k
0
votes
0
replies
476
views
News: Training in Variant Analysis @NIH, January 28-31, 2020
Variant-Calling next-gen genome
updated 10 weeks ago by 39k • written 3.5 years ago by ▴ 130
0
votes
0
replies
664
views
News: Illumina Webinar Germany
ngs sequencing
updated 9 months ago by 39k • written 3.5 years ago by • 0
0
votes
0
replies
1.2k
views
News: EMBO Practical Course: Microbial Metagenomics
Genomic-technologies
updated 5 months ago by 39k • written 3.6 years ago by • 0
4
votes
3
replies
3.0k
views
News: CAFE v4.0 available
phylogenetics CAFE
updated 21 days ago by 39k • written 6.2 years ago by ▴ 150
8
votes
4
replies
1.6k
views
News: supporting vg users on biostars
vg graph vgteam genome News variation
updated 5 months ago by 4.8k • written 3.7 years ago by ★ 2.4k
0
votes
0
replies
835
views
News: Training in Metagenomics Data Analysis @ NIH
next-gen Metagenomics training
updated 5 months ago by 39k • written 3.8 years ago by ▴ 130
0
votes
0
replies
1.2k
views
News: Webinar: Mapping the single-cell atlas of the bone marrow microenvironment
webinar RNA-Seq next-gen single-cell
updated 15 hours ago by 39k • written 3.8 years ago by ▴ 450
3
votes
1
reply
796
views
News: Do you want to learn how to analyze your genomic data using R and Bioconductor?
Genomics R Bioconductor
updated 15 hours ago by 39k • written 3.9 years ago by ★ 2.3k
0
votes
0
replies
534
views
News: Training in Advanced Transcriptomics (RNASeq) Analysis @ NIH, USA
RNA-Seq sequencing
updated 15 hours ago by 39k • written 3.9 years ago by ▴ 130
0
votes
0
replies
682
views
News: Bioinformatic Analysis of Next Generation Sequencing Data @NIH
RNA-Seq epigenomics ChIP-Seq
updated 15 hours ago by 39k • written 3.9 years ago by ▴ 130
0
votes
0
replies
542
views
News: Webinar: Gen3 Data Exploration
sequence data-science gene
updated 15 hours ago by 39k • written 3.9 years ago by ▴ 10
2
votes
0
replies
718
views
News: Bioinformatic courses in Canada (Quebec City) this September
Unix Genomics GWAS R Python
updated 15 hours ago by 39k • written 3.9 years ago by ★ 2.3k
0
votes
0
replies
504
views
News: Interested Phylogenetic comparative methods?
R SNP next-gen
updated 15 hours ago by 39k • written 3.9 years ago by ★ 2.3k
0
votes
0
replies
612
views
News: BIRCH Release 3.50
transcriptomics linux osx genomics
updated 15 hours ago by 39k • written 3.9 years ago by ▴ 450
5
votes
2
replies
723
views
News: The precisionFDA BioCompute Object App-a-thon has been extended to October 18!
BioCompute challenge
updated 15 hours ago by 39k • written 3.9 years ago by ▴ 70
2
votes
0
replies
867
views
News: Metagenomics and Metabarcoding Course @ Edinburgh Genomics
metagenomics metabarcoding course workshop
updated 15 hours ago by 39k • written 3.9 years ago by ▴ 40
1,000 results • Page 5 of 20
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Comment: The famous WGS dataset, Ashkenazi Trio?
Answer: BioInformatics, Software
Answer: Help with running ATAC using Encode pipeline
Answer: How to extract haplotype data from phased bcf files
Answer: How to extract haplotype data from phased bcf files
Comment: My kernel is killing the pairtools dedup script, how to prevent that?
Comment: ggsave() bug in ggplot2?
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Scholar to Pierre Lindenbaum 154k
Popular Question to mari.johnson • 0
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Recent Replies
Comment: All combinations of two columns R by Fernando • 0
The expected output would be to obtein a list of dataframes of all possible combinations of df1 column 1 and column 2 and at least one comb…
Comment: All combinations of two columns R by Basti ★ 1.5k
What would be your expected output in the example you gave ?
Comment: All combinations of two columns R by Fernando • 0
For being honest, I do not know where to start with this. This is a valid example: This would be the test df with unordered columns: `df…
Answer: how to call variants in haploid genome by raphael.B ▴ 360
Hello, you can do this using GATK Haplotype Caller using the [--sample-ploidy](https://gatk.broadinstitute.org/hc/en-us/articles/3600372256…
Comment: Difference between Allele frequency spectrum and Joint allele frequency spectrum by jena ▴ 250
> Where is the 21th comparison coming from? The bins are from 0 to 20, so you are probably missing the zero bin of no alleles (minor, deri…
Comment: All combinations of two columns R by Basti ★ 1.5k
Where are you stuck ? You need to give a reproducible example if you want a precise answer
Comment: How to extract haplotype data from phased bcf files by Lynne-95 • 0
Thanks that worked perfectly!
Answer: How to extract haplotype data from phased bcf files by Pierre Lindenbaum 154k
use %TGT (translated genotype) $ bcftools query -f '[%CHROM %POS %TGT\n]'
Comment: convert data frame with character column to data frame with integer column by Basti ★ 1.5k
You would better give an example with values because we don't know what is in each variable so we cannot give you a precise code, but seems…
Comment: RNASeq gene labeling and mRNA filter from bulkRNA data. by ATpoint 72k
This information is annotated in GTF files. You can get them for almost every annotated species from Ensembl. There is a column `gene_bioty…
Answer: DE genes across multiple scRNAseq clusters-are they significantly enriched? by ATpoint 72k
First of all, with thousands of DEGs you might want to choose a DE framework that allows testing against a fold change threshold, such as `…
Comment: PacBio Pipeline and Tools for Variant Call by Kiran ▴ 80
Thanks a lot William, I am Clear now
Comment: The famous WGS dataset, Ashkenazi Trio? by cmdcolin ★ 3.0k
what is valuable information to you
Answer: Why weblogo of biopython doesn't work? by minakshiboruahassam • 0
The weblogo3 application is giving same file even if u run the scripts separately on python standalone or whatever. The weblogo command is …
Answer: Make a BedGraph file by rfran010 ▴ 100
I would suggest bedtools makewindows to generate your 3,000bp bins then bedtools coverage to generate fraction of repeats over your windows…
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