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900 results • Page 5 of 18
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News: :: FINAL CALL :: Only 2 seats left - RNA-Seq Data Analysis Workshop for Beginners in Leipzig, Germany
NGS RNA-Seq transcriptomics
updated 10 months ago by 43k • written 3.7 years ago by 11k
0
votes
0
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648
views
News: Software: BIRCH Bioinformatics System 3.70
alignment Assembly sequence genome RNA-Seq
updated 10 months ago by 43k • written 3.8 years ago by ▴ 460
0
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0
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799
views
News: Training - Introduction to Bioinformatics for beginners
assembly SNP RNA-Seq sequencing
updated 10 months ago by 43k • written 3.8 years ago by ★ 2.5k
0
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0
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749
views
News: Training in Computational Drug Design and Discovery @NIH
Computational-Biology RNA-Seq Drug-Design Biomedical
updated 10 months ago by 43k • written 3.8 years ago by ▴ 140
0
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0
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654
views
News: Upcoming online UC Davis Bioinformatics Core workshops
Assembly RNA-Seq single-cell
updated 10 months ago by 43k • written 3.8 years ago by ▴ 30
0
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0
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866
views
News: Training - RADseq data analysis
SNP RADseq Stacks
updated 10 months ago by 43k • written 3.8 years ago by ★ 2.5k
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0
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827
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News: Training in Bioinformatics for Beginners @ NIH
NGS Biomedical Training Biomedical-Informatics
updated 10 months ago by 43k • written 3.8 years ago by ▴ 140
0
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0
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725
views
News: Training in Creating Plots, Graphs and Maps using R @ NIH
R-Platform RGraphs Biomedical NGS
updated 10 months ago by 43k • written 3.8 years ago by ▴ 140
6
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7
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2.2k
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News: NCBI wants to remove quality scores from SRA
quality-scores trimming Assembly genome SRA
updated 10 months ago by 43k • written 3.8 years ago by ▴ 40
0
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0
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794
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News: Cellosaurus release 35 is available
knowledgebase cell-line
updated 10 months ago by 43k • written 3.8 years ago by ▴ 120
0
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0
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951
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News: NGS Data Analysis Trainings (Classroom and Online)
RNA-Seq Training DNA-Seq
updated 10 months ago by 43k • written 3.8 years ago by 11k
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0
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818
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News: Summer School in Bioinformatics (ONLINE, 7th-11th September 2020)
Assembly sequence genome SNP RNA-Seq
updated 10 months ago by 43k • written 3.8 years ago by ★ 2.5k
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1.1k
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News: ONLINE COURSE. Eukaryotic genome assembly USING Pacbio and Hi-C
assembly pacbio long-reads HI-C
updated 10 months ago by 43k • written 3.8 years ago by ★ 2.5k
0
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0
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912
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News: A Practical Introduction to NGS Data Analysis - America Online Edition
NGS workshop DNA-Seq
updated 10 months ago by 43k • written 3.9 years ago by 11k
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0
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654
views
News: Course on Deep Learning
Deep-Learning Machine-Learning Python
updated 10 months ago by 43k • written 3.9 years ago by ★ 2.5k
2
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0
replies
665
views
News: Webinar in next hour : Updated BLAST RefSeq rRNA databases for identification and phylogenetic analysis
blast
updated 10 months ago by 43k • written 3.9 years ago by 141k
0
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0
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525
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News: Final Reminder for the precisionFDA Truth Challenge V2 Submissions
genome
updated 10 months ago by 43k • written 3.9 years ago by ▴ 150
0
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0
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793
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News: Statistical Computing for Environmental Science with R and Rstudio
Rstudio online-course R-project statistics
updated 10 months ago by 43k • written 3.9 years ago by ▴ 70
0
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0
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767
views
News: Introduction to Bayesian Inference in Practice
statistics MCMC R Bayesian Python
updated 10 months ago by 43k • written 3.9 years ago by ▴ 70
1
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0
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830
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News: Utrecht Bioinformatics Center: online seminars
DNA-damage Utrecht epigenomics
updated 10 months ago by 43k • written 3.9 years ago by ▴ 230
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1.1k
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News: ONLINE COURSE Introduction to R for ecologists and evolutionary biologists (IRFB04) This course will be delivered live
R
updated 10 months ago by 43k • written 3.9 years ago by ▴ 110
1
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3
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1.2k
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News: 4th Berlin Summer School in NGS Data Analysis - October 5-9, 2020
NGS RNA-Seq DNA-Seq
updated 10 months ago by 43k • written 4.2 years ago by 11k
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0
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601
views
News: Extension Announcement for the precisionFDA Truth Challenge V2
genome
updated 10 months ago by 43k • written 3.9 years ago by ▴ 150
2
votes
0
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569
views
News: Introduction to NGS data analysis - ONLINE 7th-11th September 2020
Assembly RNA-Seq next-gen-sequencing
updated 10 months ago by 43k • written 3.9 years ago by ★ 2.5k
0
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0
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737
views
News: Last chance to register for online RNA-Seq Workshop June 1-4
RNA-Seq
updated 10 months ago by 43k • written 3.9 years ago by ▴ 30
0
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0
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740
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News: Training in Bioinformatic Analysis of Next Generation Sequencing Data@NIH
RNA-Seq Biomedical next-gen
updated 10 months ago by 43k • written 3.9 years ago by ▴ 140
2
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0
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673
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News: Introduction to Deep Learning; ONLINE 28th September - 1st October
Machine-Learning Deep-Learning Python
updated 10 months ago by 43k • written 3.9 years ago by ★ 2.5k
2
votes
0
replies
664
views
News: Online course - low-coverage whole-genome sequencing data analysis
SNP
updated 10 months ago by 43k • written 3.9 years ago by ★ 2.5k
0
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0
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660
views
News: Training in Molecular Modeling and Molecular Dynamics @NIH, July 21 - 24, 2020
Dynamics RNA-Seq Modeling next-gen
updated 10 months ago by 43k • written 3.9 years ago by ▴ 140
0
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0
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746
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News: Training in Programming for Biomedical Researchers @NIH, July 14 - 17, 2020
Researchers Biomedical Programming
updated 10 months ago by 43k • written 3.9 years ago by ▴ 140
2
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0
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703
views
News: Interested in Machine Learning?
Machine-Learning R
updated 10 months ago by 43k • written 3.9 years ago by ★ 2.5k
1
vote
0
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838
views
News: Ensembl launches COVID-19 resource
genome coronavirus COVID-19 ensembl SARS-CoV-2
updated 10 months ago by 43k • written 3.9 years ago by ▴ 330
0
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0
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579
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News: The Veterans Health Administration (VHA) Innovation Ecosystem and precisionFDA are launching the COVID-19 Risk Factor Modeling Challenge on June 1st
R
updated 10 months ago by 43k • written 3.9 years ago by ▴ 150
8
votes
8
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2.9k
views
News: Coronavirus Genome Analysis: a new volume in the Biostar Handbook
biostar-handbook education
updated 10 months ago by 43k • written 4.1 years ago by 100k
0
votes
0
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792
views
News: Training in Statistical Analysis using R @NIH, July 8 - 10, 2020
R Biomedical next-gen Statistical-analysis
updated 10 months ago by 43k • written 3.9 years ago by ▴ 140
0
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0
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511
views
News: New Datasets Available and Extension Announcement for the precisionFDA Truth Challenge V2
R
updated 10 months ago by 43k • written 4.0 years ago by ▴ 150
2
votes
4
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1.2k
views
News: Course ONLINE - RNAseq data analysis with R and Bioconductor (15-19 June)
R RNA-seq Bioconductor
updated 10 months ago by 43k • written 4.0 years ago by ★ 2.5k
0
votes
0
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720
views
News: Training in Rosetta for Molecular Modeling and Design @NIH,June 22-25,2020
Data-analysis Modeling RNA-Seq Molecular-design
updated 10 months ago by 43k • written 4.0 years ago by ▴ 140
0
votes
0
replies
721
views
News: Intermediate Python for Bioinformatics 2020
python data-analysis
updated 10 months ago by 43k • written 4.0 years ago by • 0
0
votes
0
replies
693
views
News: One Week Reminder for the precisionFDA Gaining New Insights by Detecting Adverse Event Anomalies Using FDA Open Data Challenge
R
updated 10 months ago by 43k • written 4.0 years ago by ▴ 150
0
votes
0
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709
views
News: Training in Advanced Transcriptomics (RNA-Seq) Analysis@NIH, June 9-12,2020
RNA-Seq Biomedical next-gen
updated 10 months ago by 43k • written 4.0 years ago by ▴ 140
0
votes
0
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659
views
News: Training in Variant Analysis@NIH,June 2-5, 2020
Variant-analysis Genotype Variant-calling next-gen
updated 10 months ago by 43k • written 4.0 years ago by ▴ 140
0
votes
0
replies
671
views
News: Gene Ontology Virtual User Meeting
Ontology GO Enrichment Gene-Ontology
updated 10 months ago by 43k • written 4.0 years ago by • 0
0
votes
0
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568
views
News: Check Out The Upcoming Federal Crowdsourcing Webinar Series: A precisionFDA Strike for Public Health
genome
updated 10 months ago by 43k • written 4.0 years ago by ▴ 150
0
votes
1
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1.4k
views
News: Online Workshop - A Practical Introduction to NGS Data Analysis (May 27-29,2020)
NGS DNA-seq Workshop
updated 10 months ago by 43k • written 4.0 years ago by 11k
0
votes
0
replies
887
views
News: Training in Metagenomics Data Analysis, May 26-29,2020
training Metagenomics next-gen Data-analysis
updated 10 months ago by 43k • written 4.0 years ago by ▴ 140
0
votes
0
replies
743
views
News: The precisionFDA Truth Challenge V2 is now Live!
genome
updated 10 months ago by 43k • written 4.0 years ago by ▴ 150
2
votes
0
replies
576
views
News: Course online - Introduction to Deep Learning; 28th September - 1st October
Deep-Learning Python
updated 10 months ago by 43k • written 4.0 years ago by ★ 2.5k
0
votes
0
replies
809
views
News: bioinfo-core workshop at virtual ISMB 2020
conferences ismb
updated 10 months ago by 43k • written 4.0 years ago by 5.3k
0
votes
0
replies
531
views
News: International Conference on Machine learning and Cloud Computing (MLCL 2020)
Assembly SNP sequencing
updated 10 months ago by 43k • written 4.0 years ago by ▴ 10
900 results • Page 5 of 18
Recent Votes
Comment: what is the purpose of indexing the reference genome (Kallisto)
Answer: what is the purpose of indexing the reference genome (Kallisto)
Answer: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
Answer: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
Answer: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
Webinar “Learning Single-cell Atlases” with Dr. Fabian Theis, author of Scanpy on May 8
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Recent Replies
Comment: genome assembly records not present in assembly_summary.txt by GenoMax 141k
Can you clarify what `metainfo` you are referring to? The accession that you refer to does exist in [**GenBank assembly_summary file**][1…
Comment: what is the purpose of indexing the reference genome (Kallisto) by i.sudbery 19k
Specifically: If we want to look up all the places where a 31mer is in a genome without and index, we have to compare that 31 to the first…
Answer: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File? by benformatics 3.9k
This is way easier to do solely in R now 10 years later. library(GenomicFeatures) library(rtracklayer) ## import GTF…
Answer: what is the purpose of indexing the reference genome (Kallisto) by dsull ★ 5.8k
I'll see if I can explain things in super simple terms (albeit with some abuse of the actual technical details) to provide a conceptual und…
Answer: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File? by Jalil Sharif ▴ 80
The updated code in R using rtracklayer for reading a gtf file. https://github.com/jalilsharif/gtf_utr_fix_r/blob/main/gencode_utr_fix_d…
Comment: Rare Disease Variant Pathway Analysis by The_PyPanda ▴ 10
Thank you LauferVA, Your advice has been useful and I now a lot to think about and read. Also, I just wanted to clarify I do not ha…
Comment: CDS vs cDNA vs transcript for mapping RNA-Seq reads by Antonio R. Franco ★ 5.1k
You cannot do it with Kallisto either. In fact, the indexation will fail in attempting to index a genome file
Comment: PCA plot by ATpoint 82k
What is your question? Add details and clarity. Ask a precise question and please avoid opening more questions on the same underlying issue…
Comment: genome assembly records not present in assembly_summary.txt by Joe 21k
If you have the accession numbers can you not use something like `eutils`?
Comment: Create a new bed file with all pairwise combinations between two other bed files by Pierre Lindenbaum 161k
> Next, I tried using bedtools window but in your original post you said > tried finding the intersection of these bed files using bedto…
Comment: How to trim transcripts using information from NCBI contamination screen report by Lada ▴ 30
Thank you very much! I tried it out! This is a handy tool useful for many different applications, and in regards to my problem - although …
Comment: Create a new bed file with all pairwise combinations between two other bed files by J • 0
Thank you for replying Pierre. I first added a third column to the SNP bed file, so that I would get a range of 1 for each SNP awk 'B…
Comment: Create a new bed file with all pairwise combinations between two other bed files by Pierre Lindenbaum 161k
> using bcftools Show us what you tried
Answer: gvcf joint calling by Jeremy Leipzig 22k
> Hi, guys, there is a question about the genomic gVCF file. I wonder > that since gVCF contains the non-var block records, why after merge…
Comment: Missing protein (VEGF-A) in String db by shalespringer • 0
Thank you for replying here; this helped me figure out why MAPK10 was missing from my results. It was also marked as a pseudogene in the En…
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