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News: Winter School in Bioinformatics - last seats available
Genomics Unix RNA-seq docker
updated 15 months ago by 43k • written 16 months ago by ★ 2.5k
0
votes
0
replies
513
views
News: Virtual RNA-seq Analysis (Model Organism) Workshop
virtual expression rna-seq analysis workshop
16 months ago by mia.nahom ▴ 10
0
votes
0
replies
525
views
News: Introduction to R Shiny course
WebApplications R RShiny
16 months ago by carlopecoraro2 ★ 2.5k
1
vote
0
replies
575
views
News: New version of ElasticBLAST (1.0.0) available.
NCBI ElasticBLAST BLAST
16 months ago by PeterC_NCBI ▴ 410
0
votes
1
reply
549
views
News: Courses in January - still a few seats available
R-Shiny Genomics Unix R
updated 15 months ago by 43k • written 16 months ago by ★ 2.5k
0
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0
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373
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News: Sex Chromosome Evolution course
Genomics Sex-Chromosome-Evolution
updated 16 months ago by 43k • written 16 months ago by ★ 2.5k
0
votes
0
replies
500
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News: Cellosaurus release 44 is available
cellosaurus cell-line
updated 16 months ago by 43k • written 16 months ago by ▴ 120
0
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0
replies
419
views
News: Introductory video to the Cellosaurus
cellosaurus cell-line
updated 16 months ago by 43k • written 16 months ago by ▴ 120
0
votes
3
replies
1.1k
views
News: Nvidia Clara Parabricks is FREE for R&D
nvidia workflow gpu
updated 16 months ago by 2.8k • written 16 months ago by 161k
2
votes
3
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715
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News: NCBI Comparative Genome Viewer now allows searches for genes across aligned assemblies
Browser NCBI Alignments Genome
16 months ago by PeterC_NCBI ▴ 410
1
vote
6
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1.2k
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News: Course - FLOW CYTOMETRY ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor FlowCytometry R
updated 15 months ago by ▴ 100 • written 16 months ago by ★ 2.5k
0
votes
0
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341
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News: INTRODUCTION TO ANALYTICAL PALEOBIOLOGY: FOSSIL RECORD BIASES, DIVERSITY, & BIOGEOGRAPHY
Biogeography Paleobiology R
16 months ago by carlopecoraro2 ★ 2.5k
1
vote
0
replies
369
views
News: Analysis of Cancer Genomes Using R and Bioinformatic Tools
Genomics Cancer-Genomics R
updated 17 months ago by 43k • written 17 months ago by ★ 2.5k
0
votes
0
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567
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News: course - GENOME ASSEMBLY USING OXFORD NANOPORE SEQUENCING
Long-reads Assembly Nanopore Genome
17 months ago by carlopecoraro2 ★ 2.5k
0
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0
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368
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News: Online training - VERSION CONTROL FOR RESEARCHERS
Version Control Git Github
17 months ago by carlopecoraro2 ★ 2.5k
0
votes
1
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469
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News: Research Training In NGS Data Analysis
analysis data-analysis
updated 17 months ago by 43k • written 17 months ago by • 0
0
votes
0
replies
462
views
News: Bayesian regression modeling in R course
RegressionModeling Bayesian R
17 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
505
views
News: Genome Assembly and Annotation course
Annotation Nanopore GenomeAssembly Pacbio
17 months ago by carlopecoraro2 ★ 2.5k
3
votes
0
replies
1.2k
views
News: Changes to the default NCBI BLAST nucleotide database (nt). Learn more and provide feedback!
NCBI Databases BLAST
17 months ago by PeterC_NCBI ▴ 410
0
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0
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419
views
News: Nextflow online training
Nextflow Workflow Reproducibility
updated 17 months ago by 43k • written 17 months ago by ★ 2.5k
0
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2
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1.3k
views
News: :: FINAL CALL :: Next-Generation Sequencing Data Analysis: A Practical Introduction (December 12-14, 2022 in Munich, Germany)
rnaseq dnaseq sequencing ngs workshop
17 months ago by David Langenberger 11k
0
votes
0
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519
views
News: The Association for Single Cell Analysis (ASCA)
genomics singlecell metabolomics sequencing proteomics
17 months ago by dnsv.ev • 0
0
votes
0
replies
462
views
News: Deep Learning in Population Genomics and Phylogeography
DeepLearning Phylogeography PopulationGenomics
17 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
440
views
News: Metabarcoding in Microbial Ecology Workshop
Qiime2 R Metabarcoding Microbial-Ecology
18 months ago by carlopecoraro2 ★ 2.5k
2
votes
2
replies
657
views
News: Gene Set Enrichment Analysis in R/Bioconductor
Gene-Set-Enrichment-Analysis R Cancer-Genomics GSEA
18 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
397
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News: Analysis of RNA sequencing data with R/Bioconductor course.
Bioconductor RNAseq R
18 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
600
views
News: Winter School in Bioinformatics
course workshop
updated 17 months ago by 43k • written 18 months ago by ★ 2.5k
1
vote
0
replies
475
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News: Introduction to Nextflow
Nextflow
updated 17 months ago by 43k • written 18 months ago by ★ 2.5k
0
votes
2
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718
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News: Seascape Genomics in R
Genomics Seascape R
updated 17 months ago by 43k • written 18 months ago by ★ 2.5k
0
votes
0
replies
375
views
News: Bioinformatics courses in November
Bioconductor Genomics R
updated 17 months ago by 43k • written 18 months ago by ★ 2.5k
0
votes
0
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887
views
News: Flow cytometry analysis with R/Bioconductor course
Bioconductor R Cytometry Flow
18 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
411
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News: course: RNA-seq analyses in non-model organisms
differential Bioconductor RNAseq expression non-model organisms analysis R
18 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
415
views
News: course - Developing R/Bioconductor packages for genomics
developing package Bioconductor Genomics R
19 months ago by carlopecoraro2 ★ 2.5k
2
votes
0
replies
472
views
News: Four NCBI workshops in October (BLAST, Primer-BLAST, Metagenome analysis, Structures in iCn3D)
metagenomics MagicBLAST BLAST NCBI Primer-BLAST
19 months ago by PeterC_NCBI ▴ 410
0
votes
0
replies
641
views
News: course - Unix and shell scripting for bioinformatics
bash Shell-scripting Unix
updated 17 months ago by 43k • written 19 months ago by ★ 2.5k
0
votes
0
replies
438
views
News: course: Data Visualization in Python
Visualisation Python Data
updated 19 months ago by 141k • written 19 months ago by ★ 2.5k
0
votes
0
replies
430
views
News: Seascape Genomics in R course
Genomics R Seascape Population
19 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
554
views
News: Cellosaurus API
line cell API
19 months ago by Amos Bairoch ▴ 120
0
votes
0
replies
441
views
News: Cellosaurus release 43 is available
cellosaurus cell-line
updated 16 months ago by 43k • written 19 months ago by ▴ 120
0
votes
0
replies
385
views
News: Genomics Webinar: Using Mastermind’s New ClinVar Integration to Accelerate Clinical Diagnoses
variant-interpretation genomics database webinar
updated 17 months ago by 43k • written 19 months ago by • 0
0
votes
0
replies
363
views
News: course: Population Genomic Inference from Low-coverage Whole-genome Sequencing Data
whole-genome genomics population low-coverage sequencing
updated 19 months ago by 22k • written 19 months ago by ★ 2.5k
0
votes
0
replies
384
views
News: :: FINAL CALL :: RNA-Seq Data Analysis Workshop (October 25 - 28, 2022 in Leipzig, Germany) - 2 seats left
RNA-Seq workshop transcriptomics
19 months ago by David Langenberger 11k
0
votes
0
replies
344
views
News: Getting the most out of R course - last call
ggplot2 R tidyverse
19 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
430
views
News: The NCTR Indel Calling from Oncopanel Sequencing Data Challenge Winners have been announced!
FDA-challenge
updated 17 months ago by 43k • written 19 months ago by ▴ 10
1
vote
0
replies
442
views
News: Webinar (free) on Multimodal Single-Cell Data from winner of NeurIPS 2021
ATAC-seq CITE-seq scRNA-seq
19 months ago by Alexander ▴ 220
1
vote
0
replies
402
views
News: course Reproducible Analysis With R
R Reproducibility analysis Data
19 months ago by carlopecoraro2 ★ 2.5k
10
votes
4
replies
992
views
News: Good morning
good morning
updated 20 months ago by 100k • written 20 months ago by 87k
6
votes
7
replies
4.2k
views
News: New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
DiffBind ChIP-seq deepTools visualization ATAC-seq
20 months ago by Rory Stark ★ 2.0k
0
votes
0
replies
454
views
News: Sex Chromosome Evolution course
course Genomics
updated 17 months ago by 43k • written 20 months ago by ★ 2.5k
0
votes
0
replies
389
views
News: Online training - Data visualization in R with ggplot2
Visualization ggplot2 R Data
20 months ago by carlopecoraro2 ★ 2.5k
1,000 results • Page 6 of 20
Recent Votes
C: TOPGO- how to do GO enrichment using a custom go database?
Answer: NGS forensics: how to know if data is fabricated
Comment: Adjust pvalue in R with different approach give me all different outcome
Comment: Bacterial plasmid analysis
Comment: DESeq2 processing problems
Comment: What does 'bundle_uuid' refer to in this metadata sheet?
What Is The Difference Between Structural Variants (Svs) And Copy-Number Variants (Cnvs)?
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Comment: Post-imputation plot by kl ▴ 10
Ok yes I think my thought was that given these errors, I could remove the mismatches and flip the alleles which seem to need flipping based…
Comment: Bacterial plasmid analysis by nicole.kavanagh • 0
I think I will perhaps use their predominant PlasmidFinder type to group plasmids together and create separate core phylogenies for each as…
Comment: Bacterial plasmid analysis by GenoMax 141k
Can you classify the plasmids based on function (resistance genes they are carrying or some other criteria). Sizes above are indicating a w…
Comment: DESeq2 processing problems by ATpoint 82k
Initially posted here https://support.bioconductor.org/p/9158036/ where I suggested to put code and data and noted that GEOquery returns ar…
Answer: Post-imputation plot by LChart 3.9k
I agree that some need to be flipped (A/T and C/G where your panel frequency is 1 - ref panel frequency). There are other variants which yo…
Comment: RNA editing sites based on DNA seq and RNA seq by Adam ▴ 30
Are those 20% unaligned reads coming after hyper-editing detection?
Answer: How to find overlap of clusters in two seurat porject by Adam ▴ 30
I think your best bet would be to use annotation mapping. You can use the features of your clusters in group 1 and apply them to group 2 to…
Answer: DESeq2 processing problems by Adam ▴ 30
> when I put in the dataset, I am not able to run it for DEG analysis because system asks me to remove the first column which is of gene na…
Comment: Bacterial plasmid analysis by nicole.kavanagh • 0
Thank you so much for your quick response, I have been searching scientific papers for about a week but have failed to come up with a reaso…
Comment: Bacterial plasmid analysis by GenoMax 141k
> however I'm not sure this would be appropriate in my case as the plasmid sequences are obviously much more diverse and vary in size Can…
Answer: cnetplot category names are too long by bkleiboeker ▴ 370
I'm sure someone could find a more elegant solution using `stringr::str_wrap`, but for a one-time solution I did this: # my results of…
Comment: Telescope issue by GenoMax 141k
You could edit the SAM file but I wonder if this problem is present in your original fastq data file so if not inconvenient do the alignmen…
Comment: Mutect2 for mitochondria variant discovery by GenoMax 141k
> I keep getting error. Without providing information about the actual error no one can help. Please edit the post and add this informati…
Comment: Telescope issue by eleven11 • 0
Thank you! how would I correct that?
Comment: DESeq2 processing problems by Ram 43k
This is an open science community, not a place to write an email to Michael Love. Please address the entire community.
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