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1,000 results • Page
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5
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3
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2.1k
views
News:
Nhgri Meeting About Human Variation Analysis Live Streaming [Now Done]
next-gen
exome
variation
updated 15 months ago by
Ram
44k • written 11.7 years ago by
Mary
11k
2
votes
3
replies
2.1k
views
News:
PDX Models: Tumor-stroma interaction
transcriptome
pdx
R
ChIP-Seq
updated 12 months ago by
Ram
44k • written 6.8 years ago by
Pine Biotech
▴ 70
0
votes
0
replies
2.1k
views
News:
MAY 10 DEADLINE: Apply to Penn State’s Grad Certificate in Applied Bioinformatics – 100% ONLINE
graduate-certificate
updated 14 months ago by
Ram
44k • written 9.2 years ago by
fiochettal
▴ 10
0
votes
0
replies
2.1k
views
News:
WORKSHOP - Introduction to bioinformatics using Linux
linux
RNA-Seq
next-gen
updated 13 months ago by
Ram
44k • written 7.2 years ago by
oliverhooker
▴ 110
0
votes
2
replies
2.1k
views
News:
NVIDIA GPU Conference sponsorship for Biostars + updated advertising terms
biostars
meta
updated 2.1 years ago by
Ram
44k • written 9.3 years ago by
Istvan Albert
100k
3
votes
0
replies
2.1k
views
News:
Big Data in Healthcare Symposium, Luxembourg, 28/29 October 2015
big-data
conference
medicine
health
updated 20 months ago by
Ram
44k • written 8.7 years ago by
Rainer
▴ 130
1
vote
0
replies
2.1k
views
News:
Trinity Workshop in Berlin (sold out)
Assembly
next-gen
RNA-Seq
updated 13 months ago by
Ram
44k • written 7.5 years ago by
carlopecoraro2
★ 2.5k
3
votes
4
replies
2.1k
views
News:
OmicCircos was updated
R
OmicCircos
updated 2.0 years ago by
Ram
44k • written 9.2 years ago by
yhu
▴ 50
0
votes
0
replies
2.1k
views
News:
Workshop: RADseq data analysis in Berlin
next-gen
genome
SNP
updated 12 months ago by
Ram
44k • written 7.0 years ago by
carlopecoraro2
★ 2.5k
12
votes
4
replies
2.1k
views
News:
#NGSchool2018 summer school in bioinformatics
NGSchool
Personalised-Medicine
Nanopore
updated 12 months ago by
Ram
44k • written 6.0 years ago by
kzkedzierska
▴ 290
1
vote
4
replies
2.1k
views
News:
webserver of TCGA data www.tcgaportal.org
genome
RNA-Seq
TCGA
gene
updated 12 months ago by
Ram
44k • written 6.0 years ago by
xushutan
▴ 40
7
votes
11
replies
2.1k
views
News:
Bringing the power of Big Data to biomedical researchers
NGS
biomedical-research
updated 12 months ago by
Ram
44k • written 6.8 years ago by
Paul Kutzner
▴ 100
2
votes
2
replies
2.0k
views
News:
Briefings In Bioinformatics International, Interdisciplinary, Multi-Level Bioinformatics Training And Education
education
updated 14 months ago by
Ram
44k • written 10.7 years ago by
Pierre Lindenbaum
162k
0
votes
0
replies
2.0k
views
News:
Physalia-courses: Eukaryotic-metabarcoding workshop
Assembly
genome
gene
sequence
updated 13 months ago by
Ram
44k • written 7.6 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
2.0k
views
News:
Illumina unveils NovaSeq 5000 and 6000
Illumina
NovaSeq
updated 13 months ago by
Ram
44k • written 7.4 years ago by
support
▴ 650
0
votes
0
replies
2.0k
views
News:
MinION access program is open
minion
updated 14 months ago by
Ram
44k • written 9.6 years ago by
Istvan Albert
100k
0
votes
0
replies
2.0k
views
News:
Introduction to Machine Learning Workshop
Machine-Learning
Big-Data
Python
updated 12 months ago by
Ram
44k • written 5.4 years ago by
carlopecoraro2
★ 2.5k
0
votes
5
replies
2.0k
views
News:
Ashg 2012 Biostar Meetup
ASHG
updated 15 months ago by
Ram
44k • written 11.6 years ago by
Zev.Kronenberg
12k
5
votes
0
replies
2.0k
views
News:
Ebi Rdf Platform Launched Today
EBI
updated 14 months ago by
Ram
44k • written 10.6 years ago by
Pierre Lindenbaum
162k
1
vote
0
replies
2.0k
views
News:
Training in Cloud Computing for Biology Researchers @ NIH, USA, Jan 17-19, 2017
training
ChIP-Seq
SNP
RNA-Seq
cloud
updated 13 months ago by
Ram
44k • written 7.6 years ago by
AABI
▴ 140
0
votes
0
replies
2.0k
views
News:
Course: Applied Statistics and Bioinformatics with R and Bioconductor. (Berlin, 22-26 January 2018)
BioConductor
Biostatistics
R
updated 12 months ago by
Ram
44k • written 6.7 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
2.0k
views
News:
Pine Biotech Public Data Analysis Projects
microbiome
cancer
genome
sequence
ngs
updated 12 months ago by
Ram
44k • written 6.8 years ago by
Pine Biotech
▴ 70
10
votes
1
reply
2.0k
views
News:
Run on 1st Berlin Summer School in NGS Data Analysis
DNA-Seq
RNA-Seq
NGS
updated 13 months ago by
Ram
44k • written 7.3 years ago by
David Langenberger
11k
0
votes
0
replies
2.0k
views
News:
Micorarray data analysis and NGS data analysis workshop
next-gen
updated 13 months ago by
Ram
44k • written 7.9 years ago by
radhika
▴ 10
1
vote
0
replies
2.0k
views
News:
Computational Biology student/post doc In the UK or EU? Come to our Bioinformatics Student Symposium!
student
sequencing
genome
symposium
updated 20 months ago by
Ram
44k • written 8.7 years ago by
ben.white
▴ 10
0
votes
0
replies
2.0k
views
News:
Data analysis in high throughput biology Workshop
next-gen
RNA-Seq
R
updated 13 months ago by
Ram
44k • written 7.4 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
2.0k
views
News:
Call for abstracts: Computational Toxicology symposium at 2015 ACS national meeting, Boston
AOP
cheminformatics
toxicogenomics
updated 2.0 years ago by
Ram
44k • written 9.2 years ago by
Diwan
▴ 650
0
votes
1
reply
2.0k
views
News:
Course: Introduction to GWAS (BERLIN)
GWAS
R
Python
Snakemake
updated 11 months ago by
Ram
44k • written 4.6 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
2.0k
views
News:
Metagenomics course. 9-13 April 2018
genome
R
Metagenomics
updated 12 months ago by
Ram
44k • written 6.3 years ago by
carlopecoraro2
★ 2.5k
0
votes
2
replies
2.0k
views
News:
Illumina iSeq 100 sequencer
firefly
illumina
iSeq100
updated 12 months ago by
Ram
44k • written 6.4 years ago by
GenoMax
142k
8
votes
0
replies
2.0k
views
News:
New MOOC: Algorithms for DNA Sequencing
alignment
Assembly
genomics
mooc
updated 19 months ago by
Ram
44k • written 8.8 years ago by
langmea
▴ 80
1
vote
0
replies
2.0k
views
News:
Free edX Course - Introduction to Linux - Start August 1, 2014
Linux
Linux-Foundation
updated 2.4 years ago by
Ram
44k • written 9.8 years ago by
rtliu
★ 2.2k
3
votes
0
replies
2.0k
views
News:
Landscape Genomics course in Berlin (Germany). Registration deadline is next week
next-gen
R
Genomics
SNP
updated 12 months ago by
Ram
44k • written 7.0 years ago by
carlopecoraro2
★ 2.5k
2
votes
1
reply
2.0k
views
News:
Genomic Data Visualization and Interpretation Workshop
next-gen
R
genome
RNA-Seq
updated 12 months ago by
Ram
44k • written 6.9 years ago by
carlopecoraro2
★ 2.5k
2
votes
4
replies
2.0k
views
News:
Reminder: Igb Tutorial Starts In 30 Minutes
visualization
genome-browser
RNA-seq
updated 14 months ago by
Ram
44k • written 10.7 years ago by
Ann
★ 2.4k
3
votes
1
reply
2.0k
views
News:
Precision Medicine Bioinformatics: From raw genome and transcriptome data to clinical interpretation (PMBI01)
next-gen
assembly
RNA-Seq
gene
updated 12 months ago by
Ram
44k • written 6.3 years ago by
oliverhooker
▴ 110
0
votes
0
replies
2.0k
views
News:
Training in Data Integration, Analysis and Visualization @ NIH, USA, Jan 9 - 12, 2018
ChIP-Seq
RNA-Seq
SNP
ngs
updated 13 months ago by
Ram
44k • written 7.6 years ago by
AABI
▴ 140
2
votes
0
replies
2.0k
views
News:
Workshop on Computational and Data Challenges in Genomic Sequencing
sequencing
genome
updated 20 months ago by
Ram
44k • written 8.6 years ago by
eahand185
▴ 20
7
votes
0
replies
2.0k
views
News:
CIViC Hackathon and Curation Jamboree at NGS in Molecular Pathology Meeting, NKI, Nov 30 - Dec 2
meeting
civic
hackathon
NKI
updated 13 months ago by
Ram
44k • written 7.7 years ago by
zlskidmore
▴ 290
0
votes
0
replies
2.0k
views
News:
Managing and Exploring Next Generation Sequencing Data course at EMBL-EBI, UK
CRAM
sequence
next-gen-sequencing
Assembly
updated 2.3 years ago by
Ram
44k • written 9.8 years ago by
rajeshr
• 0
6
votes
1
reply
2.0k
views
News:
Contest: Antibody Marathon Match Problem: ABCSpeedup
contest
updated 14 months ago by
Ram
44k • written 9.4 years ago by
Pierre Lindenbaum
162k
8
votes
4
replies
2.0k
views
News:
supporting vg users on biostars
variation-graph
genome
vg
vgteam
updated 11 months ago by
Ram
44k • written 4.7 years ago by
Erik Garrison
★ 2.4k
0
votes
0
replies
2.0k
views
News:
Workshop: Analysis of Massively Parallel Sequencing (NGS) Data
NGS
Data-Analysis
updated 14 months ago by
Ram
44k • written 9.3 years ago by
Samarth Kulshrestha
▴ 290
1
vote
1
reply
2.0k
views
News:
Bioinformatics Contest 2017. Results
contest
updated 12 months ago by
Ram
44k • written 7.1 years ago by
pavlov.ivan095
▴ 70
2
votes
1
reply
2.0k
views
News:
New NPG journal "Human Genome Variation"
journal
SNP
variation
updated 14 months ago by
Ram
44k • written 9.6 years ago by
Pierre Lindenbaum
162k
2
votes
0
replies
2.0k
views
News:
Coding,data management and Shiny applications using RStudio for evolutionary biologists
coding
data-management
R
shiny
updated 12 months ago by
Ram
44k • written 7.2 years ago by
oliverhooker
▴ 110
1
vote
0
replies
2.0k
views
News:
The FANTOM LncRNA Resource is published in Nature!
Assembly
FANTOM-CAT
RNA-Seq
lncRNA
updated 13 months ago by
Ram
44k • written 7.2 years ago by
chungchau.hon
▴ 10
6
votes
1
reply
2.0k
views
News:
Massively Differential Bias Between Two Widely Used Illumina Library Preparation Methods For Small Rna Sequencing
illumina
RNA-seq
updated 14 months ago by
Ram
44k • written 10.4 years ago by
David Langenberger
11k
2
votes
2
replies
2.0k
views
News:
BioC 2015, Bioconductor Annual Conference, July 20-22, Seattle, WA
Bioconductor
Conference
updated 22 months ago by
Ram
44k • written 9.1 years ago by
Martin Morgan
★ 1.6k
1
vote
1
reply
1.9k
views
News:
2013 Gmod Summer School - Now Accepting Applications!
galaxy
updated 15 months ago by
Ram
44k • written 11.1 years ago by
girlwithglasses
▴ 280
1,000 results • Page
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Answer: What is the proper way to identify the cell types of scRNAseq cluster?
Answer: What is the proper way to identify the cell types of scRNAseq cluster?
Comment: FastQC interpretation - 16S sequencing
Comment: FastQC interpretation - 16S sequencing
Comment: Number of cells in each clusters
A: Pull number of cells in cluster from seurat object
Combining Data Of Multiple Vcfs Into One.
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Comment: FastQC interpretation - 16S sequencing
by
Christopher
• 0
@genomax Thank you so much for replying. I was quite unsure about the qualities. One more question. There is no problem within nucleotide d…
Comment: FastQC interpretation - 16S sequencing
by
GenoMax
142k
> My specific question is about the feasibility of per base sequence content analysis and whether I should be concerned about a particular …
Comment: How to get the ratio of allele counts from GATK derived VCF file?
by
anikcropscience
▴ 230
But I used the same bam files in both freebayes and GATK. Even the overlapping SNPs from both software are giving different estimates in te…
Comment: How to get the ratio of allele counts from GATK derived VCF file?
by
Pierre Lindenbaum
162k
may be downsampling(?), QC failing reads ?
Comment: How to get the ratio of allele counts from GATK derived VCF file?
by
anikcropscience
▴ 230
Thank you. However, I extracted the AD for each SNP that gives two numbers separated by a comma. I guess the first one is for reference and…
Answer: How to get the ratio of allele counts from GATK derived VCF file?
by
Pierre Lindenbaum
162k
> However, I am doing SNP calling using GATK, but there is no such information field for reference and alternate allele counts. it's in …
Comment: samtools write-index
by
GenoMax
142k
> The index file is older than the data file: alignment.sorted.bam.bai I don't think that warning is going to cause any issues. Not sure w…
Comment: samtools write-index
by
Pierre Lindenbaum
162k
can you please retry, but add rm -vf alignment.sorted.bam.bai before invoking minimap2. And `-o alignment.sorted.bam` should be enoug…
Answer: from CRAM to fastq
by
Pierre Lindenbaum
162k
if the CRAM/BAM is paire-end, it **must** be sorted on query name using samtools collate https://x.com/lh3lh3/status/1132756684789768202 …
Comment: from CRAM to fastq
by
machaalani29
• 0
one of the issues is that I am not very sure how the sequencing was done, but I think it was single end. any suggestions hoot do that?
Comment: from CRAM to fastq
by
machaalani29
• 0
the option -c is to compress the file
Comment: from CRAM to fastq
by
GenoMax
142k
Possibly. You appear to have written the data to a single file (in case it was paired-end to begin with). Check to make sure secondary alig…
Comment: converting transcript IDs (Ensembl) to gene symbols in R
by
GenoMax
142k
https://www.biostars.org/u/18990/ : Please do not delete threads that have received a comment/answer.
Comment: downloading chemical database from ChEMBL
by
GenoMax
142k
Activities with `cucurbitacin A`: https://www.ebi.ac.uk/chembl/web_components/explore/activities/STATE_ID:RHxG8uDfrtbmiyaY55ic-w%3D%3D `cu…
Comment: KEGG analysis in R
by
letizia.ottaviani
• 0
Hello, I have a problem to do the analysis in R. I want to kindly ask you: How did you perform KEGG pathway enrichment analysis in R for…
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