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401 results • Page
4 of 9
Sort: replies
Rank
Views
Votes
Replies
0
votes
2
replies
276
views
How are score_weights calculated in this code?
single-cell
3 days ago by
carolofharvest
▴ 40
1
vote
2
replies
236
views
Need help for downloading arabdopsis thaliana reference genome fasta file and gtf file
Arabidopsis-thaliana
gtf
reference-genome
updated 14 days ago by
Ram
43k • written 14 days ago by
Ravita
• 0
0
votes
2
replies
323
views
How to update R on ubuntu
installation
update
R
apt-get
15 days ago by
Bosberg
▴ 50
0
votes
2
replies
303
views
Statistical Advice Needed for RNAseq Data Analysis
Statistical-Significance
Genomics
RNA-seq
Data-Analysis
updated 28 days ago by
Ram
43k • written 29 days ago by
David
• 0
2
votes
2
replies
1.8k
views
Parametric or non-parametric tests for qPCR significance testing between treatments?
qPCR
statistical test
parametric
non-parametric
updated 11 days ago by
e.r.zakiev
▴ 210 • written 3.9 years ago by
n.anuragsharma
▴ 40
1
vote
2
replies
360
views
Extracting information from gff3 file produced by augustus
augustus
gff3
updated 29 days ago by
Istvan Albert
100k • written 4 weeks ago by
Jiang
• 0
0
votes
2
replies
291
views
Extracting mutation status from MAF files - TCGA
TCGA
maf
mutation
updated 2 days ago by
Zhenyu Zhang
★ 1.2k • written 11 days ago by
yahn
• 0
2
votes
2
replies
238
views
Raw counts using stringtie
stringtie
RNA-seq
updated 11 days ago by
GenoMax
142k • written 11 days ago by
ahmad.sajad4541
• 0
2
votes
2
replies
233
views
PDB related issue
rcsb
pdb
updated 16 days ago by
noodle
▴ 580 • written 16 days ago by
Nafi
• 0
3
votes
1
reply
198
views
Question about methylation location
Methylation
WGBS
bisulfide
updated 4 days ago by
dthorbur
★ 2.0k • written 5 days ago by
Eren
• 0
0
votes
1
reply
188
views
How to solve this RoseTTAFold colaboratory error?
modeling
Google
Colaboratory
RoseTTAFold
protein
updated 20 days ago by
Mensur Dlakic
★ 27k • written 21 days ago by
benguyarenbeyaz98
• 0
0
votes
1
reply
178
views
Alignment of samples with spike-in
alignment
multimapping
RNA-seq
ChIP-seq
spike-in
updated 4 days ago by
GenoMax
142k • written 4 days ago by
maria.soler
• 0
0
votes
1
reply
1.2k
views
Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
random-effects
RNA-Seq
batch-effect
updated 27 days ago by
Ram
43k • written 6.8 years ago by
Dipro
• 0
1
vote
1
reply
171
views
student
epitranscriptomics
updated 7 days ago by
ATpoint
82k • written 7 days ago by
useriwa
• 0
0
votes
1
reply
191
views
extract viral protein of interest from 10k whole viral genomes
nBLAST
viral-genome
updated 4 days ago by
Ram
43k • written 4 days ago by
Shwetha
• 0
1
vote
1
reply
520
views
Load a full GFF3 into annotation track using arrow (Apollo)
arrow
python-apollo
Apollo
25 days ago by
renan.igor
• 0
0
votes
1
reply
181
views
Microbial Signal Transduction Database
MiST
updated 4 days ago by
zx8754
11k • written 4 days ago by
Shravani
• 0
0
votes
1
reply
169
views
Provean help
variant
Provean
updated 12 days ago by
Mensur Dlakic
★ 27k • written 12 days ago by
Arun Sai Kumar
• 0
0
votes
1
reply
285
views
Two databases: Human Microbiome Project and MGnify
Microbiome
databases
updated 29 days ago by
GenoMax
142k • written 29 days ago by
haiying.kong
▴ 360
0
votes
1
reply
247
views
Subsetting and merging back Seurat Object brings different results
Seurat
12 days ago by
Bine
▴ 60
0
votes
1
reply
198
views
Alternatives to metanalyisis. P integration. Horiztonal integration RNA-seq
rna-seq
updated 13 days ago by
i.sudbery
19k • written 14 days ago by
Edmond
• 0
1
vote
1
reply
452
views
Difference when using difference number of pathways score to compare between 3 groups
GSVA
Limma
updated 24 days ago by
Gordon Smyth
★ 7.2k • written 26 days ago by
Chris
▴ 280
0
votes
1
reply
228
views
Annotating a dataset with gnomAD v4 using Hail
Python
Sequencing
Hail
Exome
Annotation
updated 27 days ago by
DKA
▴ 40 • written 27 days ago by
james.melhorn
• 0
0
votes
1
reply
169
views
Mutect2 for mitochondria variant discovery
mutect2
mitochondria
updated 13 days ago by
Ram
43k • written 13 days ago by
ernestine.kubi
• 0
1
vote
1
reply
445
views
ComBat_Seq stuck adjusting the data
Batch-Effect
RNAseq
ComBat-Seq
updated 5 days ago by
Jaïr
• 0 • written 4 months ago by
NorbertK
▴ 10
0
votes
1
reply
204
views
Plot DNA methylation level of DMR on the basis of certain genes
rrbs
methylkit
updated 21 days ago by
GenoMax
142k • written 21 days ago by
Srinka
▴ 20
0
votes
1
reply
1.8k
views
Advice required for remove batch effect which perfectly collinear with contrast of interest
RNA-seq
batch-effect
updated 26 days ago by
Ram
43k • written 6.7 years ago by
boymin2020
▴ 80
1
vote
1
reply
153
views
Conda severely broken after attempting mamba install
biopython
conda
mamba
pycosat
updated 5 days ago by
andres.firrincieli
3.6k • written 5 days ago by
kacollier
▴ 30
0
votes
1
reply
101
views
Why does assigning genes with biomart give me different values than using a transcripts_to_genes.txt file?
biomart
RNAseq
kallisto
updated 7 hours ago by
GenoMax
142k • written 8 hours ago by
bioinfo
▴ 150
0
votes
1
reply
1.2k
views
Controlling for batch effect in SNP-based PCA
whole-genome
PCA
batch-effect
SNP
updated 27 days ago by
Ram
43k • written 4.8 years ago by
Ace
▴ 90
0
votes
1
reply
208
views
Find subcluster under a cluster, find differential genes in one cluster between 2 samples??
clustering
subclustering
scRNAseq
updated 21 days ago by
bk11
★ 2.4k • written 21 days ago by
alphaflylizard
• 0
0
votes
1
reply
192
views
Differential Accessibility
DiffBind
updated 15 days ago by
Ram
43k • written 15 days ago by
Shloka
• 0
0
votes
1
reply
247
views
merging Seurat objects after SCT
Seurat
SCT
updated 29 days ago by
Ram
43k • written 29 days ago by
michelle.swarovski
• 0
1
vote
1
reply
2.7k
views
Plotting a PCA Plot from SVASeq results
pca
ruvseq
sva
svaseq
batch-effect
updated 27 days ago by
Ram
43k • written 6.3 years ago by
jjrin
▴ 40
1
vote
1
reply
208
views
ComplexHeatmap anno_mark position changes with height of gene expression heatmap
ComplexHeatmap
29 days ago by
CTLong
▴ 110
0
votes
1
reply
2.8k
views
Can't make sva comparison despite very distinct batch effects
sva
batch-effect
updated 27 days ago by
Ram
43k • written 6.2 years ago by
jjrin
▴ 40
0
votes
1
reply
529
views
GAPIT p-value significance threshold
GAPIT
p-value
GWAS
updated 19 days ago by
ginellegrenier
• 0 • written 5 months ago by
Clayton
• 0
0
votes
1
reply
144
views
consensus sequence calling
consensus
updated 1 day ago by
bk11
★ 2.4k • written 1 day ago by
Ghada
• 0
1
vote
1
reply
209
views
Failed kmer content
kmer
illumina
ngs
updated 21 days ago by
Ram
43k • written 21 days ago by
Kasturi
• 0
0
votes
1
reply
271
views
creating batch colum for batch correction
batch-correction
combat
8 days ago by
Expert
▴ 10
0
votes
1
reply
235
views
Finding batch and outlayers
Pca
updated 15 days ago by
christopher medway
▴ 460 • written 16 days ago by
Tigran
• 0
0
votes
1
reply
184
views
unable to get feature count results
featureCounts
updated 14 days ago by
Ram
43k • written 14 days ago by
Ravita
• 0
0
votes
1
reply
416
views
How to add rowLinks, rowTree in SummarizedExperiment manually.
phylogenetic-tree
microbiome
updated 26 days ago by
Ram
43k • written 20 months ago by
Muhammad
• 0
0
votes
1
reply
89
views
Using Cutadapt to trim adapters from paired-end small RNA sequence data
trimming
adapters
cutadapt
sRNA-seq
smallRNA
updated 9 hours ago by
GenoMax
142k • written 10 hours ago by
melissa.joubert
• 0
0
votes
1
reply
207
views
When should I use R-MarkDown over R-Script ?
r
rscript
rmarkdown
updated 4 days ago by
ATpoint
82k • written 4 days ago by
Amr
▴ 160
0
votes
1
reply
158
views
Displaced fragment length distribution in ATAC-seq
ATAC-seq
nucleosome
fragment
updated 22 days ago by
ATpoint
82k • written 22 days ago by
enanoide
• 0
1
vote
1
reply
667
views
Save experiment with batch effects - Protein microarray
statistics
protein-array
batch-effect
updated 28 days ago by
Ram
43k • written 4.4 years ago by
s.lima.diogenes
▴ 10
0
votes
1
reply
196
views
RNA-seq bacteria contamination
RNA-seq
updated 22 days ago by
GenoMax
142k • written 22 days ago by
sh
• 0
1
vote
1
reply
100
views
sci-RNA-seq
Seurat
sci-RNA-seq
updated 8 hours ago by
Ram
43k • written 13 hours ago by
kilcdincer
▴ 10
0
votes
1
reply
222
views
GATK won't produce figures while analyzing covariates to generate 'recal_plots.pdf'
GATK
recalibration
updated 13 days ago by
GenoMax
142k • written 13 days ago by
mgranada3
▴ 30
401 results • Page
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Thank you so much
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Please accept your own answer to mark the post as solved.
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You need to have indexed your bam/sam file using `samtools index`
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According to HUGO there is only one [**ZSCAN2 gene**][1] and it points to the first Ensembl gene ID (ENSG00000176371). Ensembl is annotatin…
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