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510 results • Page
4 of 11
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0
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2
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proportional hazard assumption was not satisfied for a covariate
hazard-ratios
Cox-model
survival
updated 14 days ago by
Ram
43k • written 4.4 years ago by
akutasame
▴ 40
0
votes
2
replies
555
views
autodockvina
python
python3
autodock
updated 13 days ago by
Ram
43k • written 4 months ago by
iamsmor
• 0
2
votes
2
replies
633
views
Batch correction for DE analysis
batch-correction
mRNA
RNA-seq
DEGs
MDSplot
updated 14 days ago by
Ram
43k • written 2.6 years ago by
Yoonji
▴ 10
1
vote
2
replies
235
views
convert a seurat object to expressionset
Seurat
20 days ago by
Bine
▴ 60
1
vote
2
replies
1.9k
views
Remove batch effect from exome data
NGS
exome-sequencing
batch-effect
updated 13 days ago by
Ram
43k • written 6.6 years ago by
Alternative
▴ 270
0
votes
2
replies
231
views
How to detect and visualize ORFs in bacterial genome?
statistics
visualization
ORFs
genome
19 days ago by
marongiu.luigi
▴ 710
0
votes
2
replies
393
views
error in coding potential calculator CPC2
cpc
CPC2
coding-potential
12 days ago by
Ashok
• 0
2
votes
2
replies
287
views
How to calculate identity percentage between proteins contained in a FASTA file?
protein
FASTA
alignment
updated 7 days ago by
Ram
43k • written 8 days ago by
v.berriosfarias
▴ 140
1
vote
2
replies
329
views
Extracting information from gff3 file produced by augustus
augustus
gff3
updated 16 days ago by
Istvan Albert
100k • written 17 days ago by
Jiang
• 0
0
votes
2
replies
429
views
miRNAs quantification using mirdeep2 tool
differential-expression
mirdeep2
miRNA
12 days ago by
Ashok
• 0
3
votes
2
replies
308
views
Seeking Guidance on How to Annotate Unusual Cell Populations in Single-Cell Data
Transcriptomics
Single-Cell
updated 26 days ago by
Ram
43k • written 8 weeks ago by
Daddy
▴ 20
0
votes
2
replies
209
views
Can't figure out plink --sample-diff
plink
21 days ago by
curious
▴ 750
1
vote
2
replies
212
views
In need of help with my RNA velocity trajectory inference pipeline!
RNAvelocity
23 days ago by
phhelou5
• 0
0
votes
2
replies
276
views
How to get genes in a gene set in msigdb?
msigdb
26 days ago by
Chris
▴ 260
0
votes
2
replies
259
views
Annovar using R package
Annovar
gnomAD
R
6 days ago by
DKA
▴ 40
1
vote
2
replies
235
views
Minimum RAM and Storage requirement for creating PSSM using ncbi-blast-2.2.30+-x64-linux
blast
pssm
11 hours ago by
Nafi
• 0
2
votes
2
replies
1.6k
views
read count for RNA sequencing via nanopore
long-reads
RNA-seq
gene-expression
read-count
updated 26 days ago by
Ram
43k • written 2.9 years ago by
gat
• 0
0
votes
2
replies
875
views
freebayes calls presumably homozygous variants as heterozygotes
SNP
freebayes
variant-call
genotyping
updated 26 days ago by
virginia.baraja
• 0 • written 3.1 years ago by
johanna.pieplow
• 0
1
vote
2
replies
814
views
What type of normalization does removeBatchEffect function require as the input?
batch
limma
removeBatchEffect
rna-seq
batch-effect
updated 15 days ago by
Ram
43k • written 21 months ago by
ev97
▴ 20
0
votes
2
replies
340
views
GSEA analysis in R
GSEA
R
Arabidopsis
13 days ago by
Sudip
• 0
1
vote
2
replies
298
views
Can I readmap short reads to rDNA references?
rDNA
assembly
updated 14 days ago by
Ram
43k • written 14 days ago by
aniigodwinn
• 0
1
vote
2
replies
289
views
Can I compare kallisto counts from samples with different amount of reads?
RNA-seq
kallisto
15 days ago by
bioinfo
▴ 150
0
votes
2
replies
516
views
Gene expression assay Yeast sample prep
Live-cells
updated 29 days ago by
Ram
43k • written 22 months ago by
dshdixit
▴ 10
0
votes
2
replies
185
views
What should I consider as FASTA for dataset?
PDB
FASTA
2 days ago by
Nafi
• 0
4
votes
2
replies
243
views
Trying to write bwa mem -> samtools view -> samtools sort loop
bwa
samtools
mapping
genome
updated 27 days ago by
Pierre Lindenbaum
161k • written 27 days ago by
Lee
• 0
0
votes
2
replies
272
views
VCF annotation with gnomADv4 using R package
annotation
gnomADv4
R
VCF
14 days ago by
DKA
▴ 40
0
votes
2
replies
277
views
Regions not clear in VCF
whole-exome
variant-calling
updated 23 days ago by
Ram
43k • written 24 days ago by
priya.bmg
▴ 60
1
vote
2
replies
239
views
alignment result
RNA-seq
samtools
hisat2
6 days ago by
ahmad.sajad4541
• 0
2
votes
2
replies
270
views
Removing adapters in all the RNAseq samples regardless if they have or not, is it correct?
fastqc
trimming
adapters
cutadapt
RNAseq
updated 28 days ago by
dsull
★ 5.9k • written 28 days ago by
ev97
▴ 20
2
votes
2
replies
187
views
PDB related issue
rcsb
pdb
updated 3 days ago by
noodle
▴ 580 • written 3 days ago by
Nafi
• 0
1
vote
2
replies
935
views
vg surject for long reads
long-reads
vg
variation-graph
surject
updated 26 days ago by
Ram
43k • written 24 months ago by
ved_vyas
▴ 20
0
votes
2
replies
259
views
Bedmethyl file format
bedmethyl
methylation
updated 14 days ago by
GenoMax
141k • written 14 days ago by
njornet
▴ 20
1
vote
2
replies
247
views
permutation test in edgeR
rna-seq
edgeR
updated 9 days ago by
Gordon Smyth
★ 7.1k • written 23 days ago by
Netanel
• 0
1
vote
2
replies
1.0k
views
An issue with application of SPAdes genome assembly in Galaxy
Galaxy
SPAdes
updated 29 days ago by
Ram
43k • written 2.5 years ago by
adnan.lahuf
• 0
3
votes
2
replies
1.2k
views
DESeq2 design and Batch effects
RNA-Seq
batch-effect
DESeq2
updated 14 days ago by
Ram
43k • written 4.4 years ago by
baldissera152
▴ 10
0
votes
2
replies
216
views
utr sequence retrieval from UCSC
UTR
SEQUENCING
UCSC
GENOME
updated 28 days ago by
GenoMax
141k • written 28 days ago by
kim
▴ 70
0
votes
2
replies
257
views
Cell communacations analysis. I only have the proteome of one type of cell
How
to
updated 28 days ago by
QX
• 0 • written 5 weeks ago by
David Arturo
• 0
0
votes
2
replies
580
views
Bacterial contamination in human DNA sample
Long-read-sequencing
Bacterial-contamination
updated 26 days ago by
Ram
43k • written 22 months ago by
priya.bmg
▴ 60
1
vote
2
replies
826
views
Replacing default numbers with geneNames in enhancedVolcano
EnhancedVolcano
updated 29 days ago by
Ram
43k • written 2.7 years ago by
Mohan
• 0
2
votes
2
replies
284
views
DepMap: siRNA and CRSIPR discrepancy
DepMap
updated 20 days ago by
ATpoint
82k • written 20 days ago by
Shicheng Guo
★ 9.4k
0
votes
2
replies
279
views
bam merging for archaic samples
samtools
bam
updated 10 days ago by
Ram
43k • written 11 days ago by
Matteo Ungaro
▴ 100
0
votes
2
replies
168
views
How to update R on ubuntu
installation
update
R
apt-get
2 days ago by
Bosberg
▴ 50
0
votes
2
replies
627
views
Seeking Alternative Tools for Predicting Mature microRNAs from Vertebrate Animal Precursors in In Silico Study
mirdeep2
maturebayes
microrna
updated 29 days ago by
Ram
43k • written 12 months ago by
Beatriz
• 0
0
votes
2
replies
559
views
How to get the reference panel for UKBB
UKBB
GWAS
clump
12 days ago by
航太郎
• 0
1
vote
2
replies
340
views
BAM to CRAM and BAM recover with smaller size
BAM
samtools
CRAM
updated 28 days ago by
jkbonfield
★ 1.2k • written 6 weeks ago by
geocarvalho
▴ 360
0
votes
1
reply
160
views
How to solve this RoseTTAFold colaboratory error?
modeling
Google
Colaboratory
RoseTTAFold
protein
updated 7 days ago by
Mensur Dlakic
★ 27k • written 8 days ago by
benguyarenbeyaz98
• 0
0
votes
1
reply
162
views
Downloading full alignments from Pfam
pfam
updated 3 days ago by
GenoMax
141k • written 3 days ago by
bef1
• 0
1
vote
1
reply
460
views
Load a full GFF3 into annotation track using arrow (Apollo)
arrow
python-apollo
Apollo
12 days ago by
renan.igor
• 0
0
votes
1
reply
1.2k
views
Controlling for batch effect in SNP-based PCA
whole-genome
PCA
batch-effect
SNP
updated 14 days ago by
Ram
43k • written 4.7 years ago by
Ace
▴ 90
0
votes
1
reply
518
views
Geneious vs Perl script of IN SILICO PCR
PCR
Geneious
updated 29 days ago by
Ram
43k • written 23 months ago by
Bio_Crap
• 0
510 results • Page
4 of 11
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Ok yes I think my thought was that given these errors, I could remove the mismatches and flip the alleles which seem to need flipping based…
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I think I will perhaps use their predominant PlasmidFinder type to group plasmids together and create separate core phylogenies for each as…
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This is an open science community, not a place to write an email to Michael Love. Please address the entire community.
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