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343 results • Page
5 of 7
Sort: Votes
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Views
Votes
Replies
0
votes
2
replies
422
views
error in coding potential calculator CPC2
cpc
CPC2
coding-potential
28 days ago by
Ashok
• 0
0
votes
0
replies
1.2k
views
Batch estimate using kBET
batch-effect
kbet
updated 29 days ago by
Ram
43k • written 4.1 years ago by
getanid123
• 0
0
votes
0
replies
135
views
Modify plot R mtDNA indel
plot
mtDNA
R
14 days ago by
marco.barr
▴ 130
0
votes
0
replies
225
views
Conversion to tree format
PLINK
bed
Figtree
SplitsTree
updated 28 days ago by
Ram
43k • written 28 days ago by
Dinmukhamed
• 0
0
votes
0
replies
96
views
NEURON, Brian2, NEST, or PyNN
NEST
NEURON
PyNN
Brian2
2 days ago by
brunofelicianodeomena
• 0
0
votes
0
replies
108
views
meffil.snp.concordance
meffil
methylation
snp_concordance
9 days ago by
kyj222637
• 0
0
votes
0
replies
113
views
Analysis of the gene family of a genome.
Genome
gene-family
updated 25 days ago by
Ram
43k • written 25 days ago by
sansan_96
▴ 90
0
votes
0
replies
191
views
Running Phylogenetic Analysis With NCBI Genome
population-genetics
phylogenetic
updated 21 days ago by
Ram
43k • written 21 days ago by
SineWave
• 0
0
votes
2
replies
273
views
fastq screen aligner no specified.
BWA
Bowtie2
FastqScreen
updated 7 days ago by
GenoMax
142k • written 14 days ago by
Ximena
• 0
0
votes
3
replies
321
views
KEGG Pathways
r
RNA-seq
updated 17 days ago by
Ram
43k • written 17 days ago by
Sudip
• 0
0
votes
1
reply
209
views
Plot DNA methylation level of DMR on the basis of certain genes
rrbs
methylkit
updated 24 days ago by
GenoMax
142k • written 24 days ago by
Srinka
▴ 20
0
votes
0
replies
100
views
Annotating single cell data automatically
cell
annotation
single
25 days ago by
Gerard
• 0
0
votes
0
replies
147
views
Chance for trained without experience
bio
updated 9 days ago by
ATpoint
82k • written 9 days ago by
shehab
• 0
0
votes
0
replies
135
views
Synteny analysis
bacterial
synteny
genome
updated 18 days ago by
GenoMax
142k • written 18 days ago by
Namil
• 0
0
votes
0
replies
97
views
Filtering most similarly expressed gene (contrary to differential expression gene) with NOISeq?
NOIseq
24 days ago by
alifafiq1
• 0
0
votes
0
replies
111
views
DOCK6 installation on MacOS M1
installation
troubleshooting
DOCK6
updated 2 days ago by
GenoMax
142k • written 2 days ago by
Rodolfo Adrián
• 0
0
votes
0
replies
197
views
How to root an unrooted tree with a known root tree?
phylogenetics
rooting
R
29 days ago by
P.
• 0
0
votes
1
reply
180
views
Provean help
variant
Provean
updated 15 days ago by
Mensur Dlakic
★ 27k • written 15 days ago by
Arun Sai Kumar
• 0
0
votes
1
reply
164
views
perseus software (version 1.5.5)
preseus
mass
spectrometry
data
updated 1 day ago by
DGTool
▴ 20 • written 2 days ago by
iqra
• 0
0
votes
1
reply
192
views
Microbial Signal Transduction Database
MiST
updated 7 days ago by
zx8754
11k • written 7 days ago by
Shravani
• 0
0
votes
0
replies
219
views
Lncipedia GTF file error
Proteomics
updated 28 days ago by
Ram
43k • written 28 days ago by
atharvakarkare14
▴ 40
0
votes
0
replies
156
views
STAR total splices (in Log.final) vs collapsed splice junctions (in SJ.out.tab)
STAR
20 days ago by
tnminh89
▴ 10
0
votes
1
reply
205
views
Alternatives to metanalyisis. P integration. Horiztonal integration RNA-seq
rna-seq
updated 16 days ago by
i.sudbery
19k • written 16 days ago by
Edmond
• 0
0
votes
0
replies
122
views
Get Paired TCRa/b from MIXCR
python
r
mixcr
tcr_seq
11 days ago by
Scott McKay
▴ 30
0
votes
1
reply
139
views
Wrong ZYGOSITY by ensembl vep on DeepVariant vcf file
annotation
vcf
vep
zygosity
deepvariant
2 days ago by
asalimih
▴ 60
0
votes
0
replies
92
views
Correct way of reducing predictive model complexity
lasso
glmnet
predictvemodeling
regression
25 days ago by
sativus
▴ 20
0
votes
1
reply
177
views
Mutect2 for mitochondria variant discovery
mutect2
mitochondria
updated 16 days ago by
Ram
43k • written 16 days ago by
ernestine.kubi
• 0
0
votes
2
replies
598
views
How to get the reference panel for UKBB
UKBB
GWAS
clump
28 days ago by
航太郎
• 0
0
votes
0
replies
129
views
Pairwise alignment and Ka/Ks computation
Pairwise-Alignment
Genomics
Ka-Ks
updated 25 days ago by
Ram
43k • written 25 days ago by
maxime.policarpo
▴ 200
0
votes
0
replies
80
views
Help interpreting KEGG module definitions for converting to NetworkX graph
definition
kegg
module
database
genomics
23 hours ago by
O.rka
▴ 720
0
votes
1
reply
189
views
How to solve this RoseTTAFold colaboratory error?
modeling
Google
Colaboratory
RoseTTAFold
protein
updated 23 days ago by
Mensur Dlakic
★ 27k • written 24 days ago by
benguyarenbeyaz98
• 0
0
votes
0
replies
94
views
In what situations is 'outer' typically used when using anndata.concat()?
concat
anndata
scanpy
3 days ago by
Spring
• 0
0
votes
1
reply
704
views
after selecting specific GO terms to plot, cneplot is not showing any color for genes, GO terms and only showing lines without nodes.
cneplot
updated 16 days ago by
Ram
43k • written 16 days ago by
Dr Huma Naz
• 0
0
votes
0
replies
97
views
Difficulties getting **the adjacency file** necessary for **aracne2regulon** function.
VIPER
MARINA
ARACNe
25 days ago by
Biostars2200
• 0
0
votes
2
replies
367
views
How to update R on ubuntu
installation
update
R
apt-get
18 days ago by
Bosberg
▴ 50
0
votes
0
replies
122
views
Looking for phytopathogenic, Nitrogen-Fixing, and Growth-Promoting databases for Metagenomic Analysis
Bacteria
Metagenomics
Database
12 days ago by
Christopher
• 0
0
votes
3
replies
202
views
How to access GWAVA software of data
GWAVA
updated 3 days ago by
GenoMax
142k • written 3 days ago by
nonaddldy
▴ 10
0
votes
0
replies
215
views
miRDeep2: How to get the read counts
mirdeep2
28 days ago by
Atul K.
• 0
0
votes
0
replies
283
views
Choice of relatedness cutoff for GWAS of a large cohort (>100K samples)
relatedness
IBD
GWAS
updated 25 days ago by
Ram
43k • written 15 months ago by
Pine
▴ 20
0
votes
0
replies
145
views
Allele specific expression of imprinted gens from 10x scRNA-seq data
scrna-seq
imprinted
10x
genes
7 days ago by
singcell
• 0
0
votes
0
replies
140
views
Somatic variant calling with Mutect2 using 2 matched-normals for one sample
cancer
mutect
variant-calling
GATK
somatic-variants
updated 17 days ago by
Ram
43k • written 17 days ago by
Alexandros
• 0
0
votes
0
replies
125
views
How to implement an IGV to streamlit app?
python
streamlit
igv
11 days ago by
avigail.shnaider
• 0
0
votes
3
replies
322
views
Landmark gene selection in L1000.
L1000
landmark-gene
cmap
updated 17 days ago by
GenoMax
142k • written 18 days ago by
kim
• 0
0
votes
1
reply
224
views
How to convert Haps file to vcf file?
pre-phasing
GWAS
imputation
updated 7 days ago by
curious
▴ 750 • written 7 days ago by
SeoGyun
• 0
0
votes
4
replies
415
views
Highest variable features in single cell data
single-cell
10 days ago by
carolofharvest
▴ 40
0
votes
0
replies
232
views
create genewise sync file in popoolation
popoolation
updated 29 days ago by
GenoMax
142k • written 29 days ago by
N.Y.Wiyana-Hewage
• 0
0
votes
0
replies
209
views
agilent microarray gpl data does not have gene symbol column
microarray
agilent
gpl
updated 28 days ago by
Ram
43k • written 28 days ago by
mja
• 0
0
votes
3
replies
363
views
CWl and toil singularity image e.g busybox? Thank you
toil
singularity
updated 18 days ago by
Ram
43k • written 5 months ago by
Fadi
• 0
0
votes
0
replies
2.0k
views
Correcting batch effect from known variables in RnBeads using Combat
Combat
450k
methylation
RnBeads
batch-effect
updated 29 days ago by
Ram
43k • written 7.2 years ago by
rahel14350
▴ 40
0
votes
6
replies
497
views
Use of Kraken output for functional analysis
metagenomics
kraken
shotgun
updated 23 days ago by
gv
• 0 • written 6 weeks ago by
Srinka
▴ 20
343 results • Page
5 of 7
Recent Votes
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Comment: Differentially Expressed Genes between two conditions (scRNA, single GEO dataset
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Recent Replies
Answer: Design for complex RNA-Seq experiment using Deseq2
by
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14k
This is a rather small experiment, I don't know that you can establish a meaningful baseline for each patient with a single pre sample, and…
Comment: GG Sankey plot
by
LauferVA
4.2k
@bk11 i changed this comment to an answer. if you disagree please let me know. thanks for sharing your knowledge. VAL
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation
by
hannes.bongartz
• 0
Thanks for the input. Unfortunately, that didn't help either. I appreciate any other tips. Thank you
Answer: GG Sankey plot
by
bk11
★ 2.5k
You need to change your data table into a 'long' format. You can do something like this- GOs_childs_recursive <- GOs_childs_recursive …
Answer: Trimming tool
by
ntsopoul
▴ 60
I use Trim Galore which automatically recognizes adaptors. https://github.com/FelixKrueger/TrimGalore Here is the script I am using for…
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142k
There are plenty. `bbduk.sh` from BBMap suite (https://jgi.doe.gov/data-and-tools/software-tools/bbtools/bb-tools-user-guide/bbduk-guide/ )…
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation
by
bk11
★ 2.5k
Please check out [in this link.][1] [1]: https://github.com/jokergoo/ComplexHeatmap/issues/349
Comment: Reconstruction of locus, order contigs
by
dthorbur
★ 2.0k
[Here](https://www.biostars.org/p/9544689/) is a forum post that may answer your question.
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by
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▴ 160
@atpoint I checked all transcripts of GAPDH. they all have 0 TPM.
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3.6k
> 1) I do not want to merge the MEs rather I asked about replicates, as > some replicates of same sample are showing different behavior for…
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For more details about what `samtools quickcheck` actually checks for, add a few `-v`'s to the command line. $ samtools quickcheck -…
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Second what is said above, ensembl_id is the unique identifier. As a good bioinformatics habit, always use unique identifier for your anal…
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hannes.bongartz
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It doesn't work. The annotation labels are still in a default fontsize. I cant find a way to set the fontsize.
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43k
Yes. The solution to most things with ComplexHeatmap is to play around with parameters.
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I do not want to re-annotate the genome. I ask if there is a way to extract the region aligned with the mauve, in .gbk format.
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