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Parentage analysis for Agrigenomics data
Parentage analysis
4.2 years ago by Kritika ▴ 260
1
vote
2
replies
3.6k
views
how to use idat file for analyses in bioconductor
illumina idatfile microarray
updated 21 months ago by 43k • written 8.2 years ago by ▴ 260
0
votes
0
replies
781
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How to perform mass spec analysis
mass spec analysis
5.4 years ago by Kritika ▴ 260
3
votes
1
reply
3.1k
views
Basic understanding of ChiA-Pet analysis
ChiA-Pet analysis epigenetics ChIP-Seq
updated 5.5 years ago by 20 • written 7.8 years ago by ▴ 260
4
votes
3
replies
1.1k
views
How to predict CNV based on Gene Expression dataset
CNV Gene Expression
updated 5.5 years ago by 35k • written 5.5 years ago by ▴ 260
7
votes
19
replies
4.6k
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illumina gene expression
genomestudio microarray geneexpression illumina
updated 21 months ago by 43k • written 8.2 years ago by ▴ 260
0
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0
replies
916
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RAPIDR giving error of subscript outof bound for NIPt analysis
NIPT RAPIDR
5.7 years ago by Kritika ▴ 260
0
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0
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1.1k
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How to Metanalysis of affymetrix chip (Clariom S and U133 a2 )
Clarioms Cross Normalisation
5.9 years ago by Kritika ▴ 260
2
votes
7
replies
2.0k
views
How to convert bam into fasta with chromosome name in fasta file having consensus sequences in fasta file
fasta bam
updated 5.9 years ago by 20 • written 6.2 years ago by ▴ 260
2
votes
15
replies
1.6k
views
How to call all the allele in samples
SNP
6.0 years ago by Kritika ▴ 260
0
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8
replies
1.8k
views
How to replace row with another row in linux having NA and nucleotide bases
Linux Replace
updated 6.1 years ago by ★ 1.5k • written 6.1 years ago by ▴ 260
13
votes
25
replies
2.3k
views
8 follow
Replace <*> column with nucleotide in python or R or Shell
Nucleotide Replace Python R Shell
updated 6.1 years ago by 5.3k • written 6.1 years ago by ▴ 260
1
vote
4
replies
1.4k
views
how to deal with secondary alignment when calling snps
SNP secondary alignment
updated 6.2 years ago by 20 • written 6.2 years ago by ▴ 260
2
votes
11
replies
2.3k
views
how to find snps among samples
SNP
6.2 years ago by Kritika ▴ 260
0
votes
2
replies
1.8k
views
No RS id was called in vcf file after giving dbsnp command
SNP DBSNP no match
6.3 years ago by Kritika ▴ 260
0
votes
1
reply
774
views
How to tackle homeologous region which calling SNP for Allotetraploid genome
allotetraploid SNPs
6.3 years ago by Kritika ▴ 260
2
votes
6
replies
1.6k
views
How to Visulaise Genes per sample (Text visualisation)
Text Visualisation
updated 6.4 years ago by ★ 3.5k • written 6.4 years ago by ▴ 260
0
votes
5
replies
1.3k
views
how to plot unique genes for 103 samples
genes plot Visualisation
6.4 years ago by Kritika ▴ 260
1
vote
5
replies
1.6k
views
SNP analysis of Allotetraploid genome
SNP analysis Whole Genome Sequence Illumina
updated 6.4 years ago by 20 • written 6.6 years ago by ▴ 260
0
votes
1
reply
1.4k
views
how to get name column having more number of gene occurrence
Gene Occurence Column
updated 6.8 years ago by ★ 2.0k • written 6.8 years ago by ▴ 260
0
votes
1
reply
1.4k
views
how to know chromosome segments from the list of genes
chromosome segments gene mapping
updated 6.9 years ago by 104k • written 6.9 years ago by ▴ 260
0
votes
2
replies
1.2k
views
which indel to consider
exome indel calls mapping quality cigar value
updated 6.9 years ago by 161k • written 6.9 years ago by ▴ 260
0
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1
reply
1.4k
views
Exome seq analysis for Ion S5 sample
Exome Ion S5 Data analysis
6.9 years ago by Kritika ▴ 260
16
votes
12
replies
20k
views
to run bowtie on multiple fastq file
bowtie RNA-Seq
updated 8 months ago by 43k • written 8.2 years ago by ▴ 260
1
vote
1
reply
1.6k
views
Transcritome analysis using ion torrent sample
Ion torrent Rnaseq protocol
7.0 years ago by Kritika ▴ 260
0
votes
2
replies
1.4k
views
duplicate gene ids after running toxedo protocol
RNA-Seq duplicate gene id human sample
updated 7.2 years ago by 20 • written 7.2 years ago by ▴ 260
0
votes
9
replies
1.8k
views
differential expression of human sample showing 63000 genes in output
RNA-Seq human trancriptome cuffdiff
7.3 years ago by Kritika ▴ 260
7
votes
5
replies
5.7k
views
David Gene Id
David Gene_id Annotation
updated 7.3 years ago by 7.5k • written 8.1 years ago by ▴ 260
0
votes
0
replies
1.8k
views
error while running tophat ReadStream::getRead() called with out-of-order id#!
RNAseq Tophat Human
7.3 years ago by Kritika ▴ 260
5
votes
8
replies
9.3k
views
Ggplot for Gene ontology data
ggplot geneontology RNA-Seq
updated 7.4 years ago by ▴ 30 • written 7.4 years ago by ▴ 260
0
votes
2
replies
2.6k
views
error in ballgown bioconducor package
RNA-Seq Ball gown D.E
updated 7.4 years ago by 47k • written 7.4 years ago by ▴ 260
14
votes
7
replies
6.7k
views
what is difference between strand specific in rnaseq analysis from htseq-count
rna-seq htseq strandspecific
updated 7.7 years ago by ▴ 20 • written 7.7 years ago by ▴ 260
1
vote
1
reply
1.2k
views
why multimap is discared from chiA-pet analysis
CHIA-pet Mutplimapped Filteration step
updated 7.8 years ago by 104k • written 7.8 years ago by ▴ 260
0
votes
8
replies
2.4k
views
error while making database using Annotationforge package
error GO annotation
updated 7.8 years ago by ▴ 320 • written 7.8 years ago by ▴ 260
0
votes
5
replies
2.9k
views
GATK Mapping quality value
Map Quality GATK
updated 7.9 years ago by 161k • written 7.9 years ago by ▴ 260
1
vote
1
reply
2.2k
views
circos plot saving files
circos plot circular map
updated 8.0 years ago by 5.3k • written 8.0 years ago by ▴ 260
0
votes
0
replies
1.4k
views
error while running MAplot
RNA-Seq cummeRbund Maplot
8.1 years ago by Kritika ▴ 260
0
votes
0
replies
2.4k
views
How to plot MA plot and volcano plot by using cummeRbund
RNAseq cummeRbund MAplot volcanoplot
8.1 years ago by Kritika ▴ 260
3
votes
4
replies
1.7k
views
gene column matching in R
R Gene Column Match
8.1 years ago by Kritika ▴ 260
5
votes
8
replies
2.0k
views
R for loop
RNA-Seq R for-loop
updated 8.2 years ago by 5.1k • written 8.2 years ago by ▴ 260
4
votes
10
replies
5.9k
views
SAM line does not contain at least 11 tab-delimited fields
RNA-Seq HTseq bam sam
8.2 years ago by Kritika ▴ 260
0
votes
1
reply
2.6k
views
Diff score generated by genome studio
Genomestudio gene expression diffscore
updated 8.2 years ago by 8.3k • written 8.2 years ago by ▴ 260
0
votes
4
replies
1.9k
views
algorithm for cluster analysis of illumina microarray data
cluster microarray ilumina
updated 22 months ago by 43k • written 8.2 years ago by ▴ 260
1
vote
3
replies
1.8k
views
illumina microarray gene Technology
R RNA-Seq microarray beadarray
updated 21 months ago by 43k • written 8.2 years ago by ▴ 260
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