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1
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1
reply
352
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Exon often targeted by mobile element insertions?
epigenetics biology
updated 8 months ago by 4.0k • written 8 months ago by ★ 2.9k
5
votes
4
replies
801
views
Filter out ALT contigs from CRAM
CRAM
updated 10 months ago by 101k • written 10 months ago by ★ 2.9k
11
votes
6
replies
885
views
Medical genetics server for a developing country
server
updated 11 months ago by ★ 3.5k • written 11 months ago by ★ 2.9k
4
votes
4
replies
3.0k
views
Filtering long indels from VCF
VCF
updated 14 months ago by ▴ 470 • written 3.1 years ago by ★ 2.9k
4
votes
4
replies
770
views
Request for a linkage analysis tutorial
linkage
updated 14 months ago by 146k • written 14 months ago by ★ 2.9k
1
vote
2
replies
806
views
Manta and alignment name collision
SV
18 months ago by German.M.Demidov ★ 2.9k
0
votes
2
replies
843
views
GIAB and GRCh38 SV/CNV
benchmarking
20 months ago by German.M.Demidov ★ 2.9k
2
votes
3
replies
775
views
Resource for Enhancers for the gene X in different tissues
epigenetics
updated 22 months ago by ★ 3.0k • written 22 months ago by ★ 2.9k
0
votes
0
replies
513
views
Mouse variation VCF
VCF
2.0 years ago by German.M.Demidov ★ 2.9k
2
votes
2
replies
673
views
CNA calling in mouse tumor-normal WGS
CNV
2.1 years ago by German.M.Demidov ★ 2.9k
0
votes
0
replies
378
views
COVID GWAS: sample size (for PRS)
gwas
2.1 years ago by German.M.Demidov ★ 2.9k
4
votes
3
replies
872
views
An interpretation of an SV
SV
updated 2.3 years ago by ▴ 30 • written 2.3 years ago by ★ 2.9k
1
vote
0
replies
452
views
Relatedness with KING vs heterogeneous data
relatedness
2.5 years ago by German.M.Demidov ★ 2.9k
1
vote
2
replies
895
views
Inter-chromosome translocations in short read WGS
SV
updated 2.5 years ago by ★ 3.9k • written 2.5 years ago by ★ 2.9k
1
vote
2
replies
647
views
Fast genotyping for PRS calculation
PRS
2.6 years ago by German.M.Demidov ★ 2.9k
0
votes
0
replies
574
views
Array variant to reference-standard way
genotyping
3.0 years ago by German.M.Demidov ★ 2.9k
0
votes
0
replies
716
views
KING struggle: Relatedness
king relatedness
3.2 years ago by German.M.Demidov ★ 2.9k
2
votes
3
replies
850
views
Genotyping variants from BAM (human)
genotyping
updated 3.2 years ago by 146k • written 3.2 years ago by ★ 2.9k
2
votes
5
replies
1.6k
views
UMAP and "equal" objects
visualization
updated 3.3 years ago by • 0 • written 3.3 years ago by ★ 2.9k
1
vote
2
replies
1.5k
views
KING relatedness inference working way too long...
large-cohort
3.4 years ago by German.M.Demidov ★ 2.9k
1
vote
2
replies
969
views
Asking for papers: rare variants of potentially moderate impact
human disease genetics
3.5 years ago by German.M.Demidov ★ 2.9k
6
votes
10
replies
1.1k
views
Power of differential expression for a single gene analysis
RNA-Seq
3.6 years ago by German.M.Demidov ★ 2.9k
0
votes
0
replies
489
views
Horizontal sub-windows for IGV
IGV bam
3.6 years ago by German.M.Demidov ★ 2.9k
0
votes
0
replies
584
views
Genotyping: array variants from WGS
array WGS
3.7 years ago by German.M.Demidov ★ 2.9k
0
votes
0
replies
813
views
Deviance in allele frequencies between arrays and WGS
GWAS PRS WGS array
3.8 years ago by German.M.Demidov ★ 2.9k
0
votes
4
replies
1.5k
views
CNAs calling in tumor-normal WGS data
CNA tumor-normal WGS
updated 4.0 years ago by 88k • written 4.0 years ago by ★ 2.9k
0
votes
1
reply
608
views
NGS-based diagnostics: regulatory regions catalogue
non-coding genome medicine
updated 4.0 years ago by 20 • written 4.2 years ago by ★ 2.9k
4
votes
5
replies
1.4k
views
Preparing files to call by Manta
manta sv bam fastq
4.3 years ago by German.M.Demidov ★ 2.9k
4
votes
3
replies
990
views
Strand Specificity of Mutations
snv
4.3 years ago by German.M.Demidov ★ 2.9k
0
votes
0
replies
748
views
FreeBayes and mosaic variants
snv somatic
4.4 years ago by German.M.Demidov ★ 2.9k
0
votes
0
replies
552
views
Linkage analysis from 3 VCFs?
linkage vcf WGS
4.5 years ago by German.M.Demidov ★ 2.9k
4
votes
6
replies
1.1k
views
Find covered regions in a set of BAM files
coverage WES
4.5 years ago by German.M.Demidov ★ 2.9k
4
votes
8
replies
1.4k
views
bcftools merge fails: Only fixed-length vectors are supported
bcftools mutli-sample VCF
updated 4.5 years ago by ★ 3.3k • written 4.5 years ago by ★ 2.9k
5
votes
5
replies
1.2k
views
Whole intron deletion?
NGS WES SV
updated 4.6 years ago by 164k • written 4.6 years ago by ★ 2.9k
5
votes
1
reply
765
views
Clinics and Mobile Elements in WES data
MEI WES
updated 4.6 years ago by ▴ 30 • written 4.6 years ago by ★ 2.9k
1
vote
2
replies
903
views
Population Genetics: Identity by State measure
snp SNP
4.6 years ago by German.M.Demidov ★ 2.9k
0
votes
0
replies
696
views
Cancer association studies and CNAs
Cnv Tumor
4.6 years ago by German.M.Demidov ★ 2.9k
5
votes
5
replies
2.4k
views
SNP array CNV calling for Cancer tissue (.CEL files)
SNP microarray
updated 15 months ago by 44k • written 5.6 years ago by ★ 2.9k
5
votes
10
replies
1.2k
views
Clear deletion in arrays - no signal in NGS
cnv
4.8 years ago by German.M.Demidov ★ 2.9k
5
votes
8
replies
3.1k
views
ExomeDepth failure to run
cnv exomedepth
updated 4.9 years ago by ▴ 690 • written 4.9 years ago by ★ 2.9k
2
votes
4
replies
1.2k
views
Snp array intensity
Cnv Microarray
updated 8 months ago by 44k • written 4.9 years ago by ★ 2.9k
1
vote
0
replies
761
views
Reference Allele Bias
snv
4.9 years ago by German.M.Demidov ★ 2.9k
2
votes
6
replies
1.7k
views
Extract allele read counts for heterozygous positions in VCF
vcf
updated 5.0 years ago by ★ 3.6k • written 5.0 years ago by ★ 2.9k
0
votes
8
replies
1.9k
views
Number of Tandem and Interspersed duplications
CNV duplication SV
updated 5.1 years ago by ★ 2.9k • written 5.1 years ago by ★ 2.9k
10
votes
17
replies
4.1k
views
Ploidy Correction In NGS cancer data (human)
CNV ploidy cancer
5.3 years ago by German.M.Demidov ★ 2.9k
0
votes
0
replies
785
views
Pathway Annotation, grouping of sparse data on pathway level
pathway
5.7 years ago by German.M.Demidov ★ 2.9k
3
votes
14
replies
2.7k
views
Paired DMR methylation caller
bisulfite DMR
updated 5.9 years ago by 8.3k • written 5.9 years ago by ★ 2.9k
0
votes
0
replies
1.2k
views
Visualize B-allele frequency on IGV for 2 samples
igv
updated 18 months ago by 44k • written 6.0 years ago by ★ 2.9k
0
votes
3
replies
1.3k
views
Enrichment platforms for 1000GP exome data
data WES
6.0 years ago by German.M.Demidov ★ 2.9k
7
votes
19
replies
2.4k
views
Inconsistent Coverage on X chromosome between genders
coverage WES
6.9 years ago by German.M.Demidov ★ 2.9k
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