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24
votes
9
replies
13k
views
9 follow
.mcool to .hic
RNA-Seq
updated 8 months ago by ▴ 50 • written 5.3 years ago by ▴ 210
0
votes
1
reply
623
views
Running htseq-count to "grab" long non coding gene_id names
lncRNA htseq
updated 2.7 years ago by 142k • written 2.7 years ago by ▴ 210
0
votes
0
replies
550
views
Merging Output from Trinity and Go analysis
transcriptome merge assembly
3.1 years ago by dimitrischat ▴ 210
16
votes
10
replies
7.0k
views
from txt to bed
ChIP-Seq
updated 3.2 years ago by 20 • written 7.2 years ago by ▴ 210
0
votes
1
reply
1.0k
views
Solanum lycopersicum gff htseq-count
RNA-Seq
3.5 years ago by dimitrischat ▴ 210
10
votes
18
replies
5.0k
views
Restricting database by taxa in local blast searches
RNA-Seq
updated 3.6 years ago by • 0 • written 4.3 years ago by ▴ 210
7
votes
12
replies
1.7k
views
sorting a csv file with 3 columns
next-gen
updated 3.6 years ago by 14k • written 3.6 years ago by ▴ 210
6
votes
10
replies
1.3k
views
ggplot stacked barchart help
RNA-Seq
updated 3.7 years ago by ★ 1.9k • written 3.7 years ago by ▴ 210
3
votes
7
replies
903
views
tree with selected species
alignment
3.8 years ago by dimitrischat ▴ 210
0
votes
0
replies
520
views
DNA Conservation Graph/Score
ChIP-Seq
3.8 years ago by dimitrischat ▴ 210
7
votes
14
replies
1.5k
views
How to Blast with multiple species - Phylogenetic Analysis
ChIP-Seq alignment sequence
4.0 years ago by dimitrischat ▴ 210
0
votes
2
replies
1.4k
views
Help for OmicsBox - Blast2GO
RNA-Seq
4.0 years ago by dimitrischat ▴ 210
0
votes
0
replies
556
views
After KEGG and GO analysis, how to make tables+phylogenetic trees
RNA-Seq Assembly assembly
4.1 years ago by dimitrischat ▴ 210
1
vote
6
replies
772
views
Phylogenetics analysis between diverse species
sequencing genome
4.1 years ago by dimitrischat ▴ 210
0
votes
1
reply
697
views
from blastp uniprot to amino acid sequences fasta
RNA-Seq Assembly
4.1 years ago by dimitrischat ▴ 210
4
votes
19
replies
1.9k
views
RNA de novo assembly - blasts - KEGG - GO
RNA-Seq Assembly
updated 4.2 years ago by ▴ 200 • written 4.2 years ago by ▴ 210
0
votes
1
reply
1.7k
views
Trinity transcript_abundance.pl error using RSEM
Assembly RNA-Seq
updated 20 months ago by ▴ 20 • written 4.2 years ago by ▴ 210
1
vote
4
replies
2.3k
views
hmmscan using Pfam databases
RNA-Seq
4.3 years ago by dimitrischat ▴ 210
0
votes
1
reply
1.9k
views
De novo transcriptome assembly, annotation, blast using Trinity, transdecoder and blast
RNA-Seq Assembly
updated 4.3 years ago by 35k • written 4.3 years ago by ▴ 210
0
votes
0
replies
592
views
Clustering intervals of a dataset
ChIP-Seq
4.4 years ago by dimitrischat ▴ 210
1
vote
3
replies
872
views
ggplot2 problem many variables
ChIP-Seq
updated 4.6 years ago by 43k • written 4.6 years ago by ▴ 210
0
votes
8
replies
1.1k
views
Making phylogenetic trees
alignment phylogenetic tree
updated 4.8 years ago by ★ 2.2k • written 4.8 years ago by ▴ 210
0
votes
0
replies
1.7k
views
GOplot GOcluster plots
RNA-Seq
5.1 years ago by dimitrischat ▴ 210
3
votes
2
replies
1.2k
views
hicexplorer hicPlotTADs configuration file
ChIP-Seq
updated 5.1 years ago by 20 • written 5.2 years ago by ▴ 210
0
votes
1
reply
3.0k
views
GOplot - tutorial
RNA-Seq
5.2 years ago by dimitrischat ▴ 210
4
votes
7
replies
5.1k
views
STAR fusion error
RNA-Seq
5.2 years ago by dimitrischat ▴ 210
1
vote
1
reply
1.4k
views
tophat fusion error
RNA-Seq
5.2 years ago by dimitrischat ▴ 210
1
vote
2
replies
1.2k
views
Finding fusion genes
RNA-Seq
updated 5.2 years ago by 3.9k • written 5.2 years ago by ▴ 210
9
votes
9
replies
9.7k
views
remove duplicates with markdup
RNA-Seq samtools
updated 5.2 years ago by 35k • written 5.2 years ago by ▴ 210
0
votes
3
replies
1.3k
views
Hi-c pro error in installation process
ChIP-Seq
5.2 years ago by dimitrischat ▴ 210
4
votes
1
reply
1.7k
views
juicer.sh problem !
RNA-Seq
updated 5.2 years ago by 20 • written 5.3 years ago by ▴ 210
4
votes
6
replies
4.5k
views
how to install Juicer hi-c
ChIP-Seq
5.3 years ago by dimitrischat ▴ 210
0
votes
4
replies
835
views
Chrom3d Bead color
ChIP-Seq
5.5 years ago by dimitrischat ▴ 210
8
votes
5
replies
15k
views
Deseq2 Shrinkage or no?
RNA-Seq
updated 5.6 years ago by 8.9k • written 5.6 years ago by ▴ 210
6
votes
12
replies
6.1k
views
Merging Peaks from macs2
ChIP-Seq
updated 5.7 years ago by 43k • written 5.7 years ago by ▴ 210
5
votes
6
replies
2.4k
views
Using Diffbind R-studio
ChIP-Seq
updated 5.7 years ago by 104k • written 5.7 years ago by ▴ 210
2
votes
5
replies
2.4k
views
gff file of constituent enhancer For Young algorithm
assembly
updated 5.8 years ago by 20 • written 5.9 years ago by ▴ 210
8
votes
16
replies
6.5k
views
Editing Bed file
ChIP-Seq bed alignment sequence
updated 5.9 years ago by ▴ 10 • written 7.2 years ago by ▴ 210
3
votes
2
replies
1.4k
views
rna seq - deseq2
RNA-Seq
updated 6.4 years ago by 20 • written 6.5 years ago by ▴ 210
0
votes
1
reply
1.3k
views
ftp server usegalaxy filezilla problem
software error
updated 6.5 years ago by 104k • written 6.5 years ago by ▴ 210
16
votes
17
replies
3.2k
views
6 follow
RNA seq pipeline
RNA-Seq
6.5 years ago by dimitrischat ▴ 210
0
votes
1
reply
1.6k
views
tophat2 bowtie2index error
RNA-Seq
updated 6.6 years ago by 142k • written 6.6 years ago by ▴ 210
2
votes
4
replies
1.5k
views
input of cummerbund
RNA-Seq
updated 6.8 years ago by ★ 1.1k • written 6.8 years ago by ▴ 210
0
votes
2
replies
1.7k
views
cuffmerge no such file or directory
RNA-Seq
updated 6.8 years ago by 47k • written 6.8 years ago by ▴ 210
8
votes
5
replies
1.2k
views
tophat 2 rna seq
RNA-Seq
updated 6.9 years ago by ▴ 20 • written 7.1 years ago by ▴ 210
1
vote
1
reply
1.2k
views
cuffdiff / htseq-count
RNA-Seq
updated 6.9 years ago by 104k • written 6.9 years ago by ▴ 210
2
votes
0
replies
1.2k
views
problem running cufdiff
RNA-Seq
7.0 years ago by dimitrischat ▴ 210
1
vote
4
replies
3.8k
views
cufflinks/cuffdiff command line
RNA-Seq
updated 7.0 years ago by 43k • written 7.0 years ago by ▴ 210
5
votes
7
replies
1.6k
views
Reduce/Select reads/lines ffrom files using terminal
RNA-Seq ChIP-Seq sequence
updated 7.0 years ago by 20k • written 7.0 years ago by ▴ 210
1
vote
4
replies
1.6k
views
rna-seq alignment and calculate + compare expression levels
RNA-Seq
updated 7.1 years ago by ▴ 210 • written 7.1 years ago by ▴ 210
51 results • Page 1 of 2
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