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2
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Stringtie output for DGE
stringtie ballgown
updated 5.8 years ago by 20 • written 7.9 years ago by ▴ 40
0
votes
4
replies
3.0k
views
genome index file
RNA-Seq
updated 6.6 years ago by 20 • written 7.9 years ago by ▴ 40
1
vote
1
reply
1.3k
views
Recommended sequencing coverage for WGRS
next-gen sequencing
updated 7.0 years ago by 20 • written 7.5 years ago by ▴ 40
1
vote
3
replies
2.2k
views
Estimating the abundance of the transcripts and genes using stringtie
RNA-Seq stringtie
updated 7.0 years ago by ▴ 130 • written 7.7 years ago by ▴ 40
1
vote
0
replies
1.6k
views
minimum recommended length for transcript prediction -Stringtie
RNA-Seq stringtie PE
7.5 years ago by amy16 ▴ 40
0
votes
0
replies
2.4k
views
Comment: C: Tools to do a linear or logistic regression of DEG
7.6 years ago by amy16 ▴ 40
0
votes
3
replies
2.4k
views
Tools to do a linear or logistic regression of DEG
RNA-Seq DEG
updated 7.6 years ago by ▴ 270 • written 7.6 years ago by ▴ 40
0
votes
0
replies
862
views
RNA-seq read alignment to ref. genome-mismatch penalty
RNA-Seq hisat2
7.6 years ago by amy16 ▴ 40
0
votes
0
replies
1.7k
views
Comment: C: Phenotype data analysis for QTL validation
7.6 years ago by amy16 ▴ 40
0
votes
2
replies
1.7k
views
Phenotype data analysis for QTL validation
genetics QTLmapping validation
updated 7.6 years ago by ★ 1.2k • written 7.6 years ago by ▴ 40
0
votes
1
reply
3.4k
views
Understanding the gffcompare output for my dataset
RNA-Seq tuxedo gffcomapre
7.7 years ago by amy16 ▴ 40
0
votes
0
replies
2.2k
views
Comment: C: Estimating the abundance of the transcripts and genes using stringtie
7.7 years ago by amy16 ▴ 40
0
votes
0
replies
1.8k
views
Comment: C: Clarification in the workflow steps of the RNA-seq analysis for differential gen
7.7 years ago by amy16 ▴ 40
0
votes
2
replies
1.8k
views
Clarification in the workflow steps of the RNA-seq analysis for differential gene analysis
RNA-Seq Tuxedo Stringtie Assembly
7.7 years ago by amy16 ▴ 40
1
vote
0
replies
1.4k
views
specification of linear model and log transformation in ballgown
RNA-Seq ballgown R package function
7.7 years ago by amy16 ▴ 40
0
votes
0
replies
1.1k
views
ballgownrsem function usage details
RNA-Seq ballgown DGE tuxedo
7.7 years ago by amy16 ▴ 40
0
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1
reply
3.0k
views
Comment: C: Error in reading ballgown object
7.7 years ago by amy16 ▴ 40
0
votes
1
reply
3.0k
views
Comment: C: Error in reading ballgown object
7.7 years ago by amy16 ▴ 40
0
votes
0
replies
7.2k
views
Comment: C: Error in file(file, "rt") : invalid 'description' argument
7.7 years ago by amy16 ▴ 40
2
votes
5
replies
3.0k
views
Error in reading ballgown object
RNA-Seq R ballgown
updated 2.6 years ago by ▴ 130 • written 7.7 years ago by ▴ 40
1
vote
2
replies
7.2k
views
Error in file(file, "rt") : invalid 'description' argument
RNA-Seq R ballgown
updated 7.7 years ago by 89k • written 7.7 years ago by ▴ 40
1
vote
0
replies
3.1k
views
Comment: C: R package information
7.7 years ago by amy16 ▴ 40
4
votes
3
replies
3.1k
views
R package information
RNA-Seq bioconductor R
updated 7.7 years ago by 22k • written 7.7 years ago by ▴ 40
0
votes
0
replies
2.5k
views
Comment: C: syntax error in R when run on HPC
7.7 years ago by amy16 ▴ 40
2
votes
3
replies
2.5k
views
syntax error in R when run on HPC
RNA-Seq R ballgown
7.7 years ago by amy16 ▴ 40
1
vote
2
replies
1.7k
views
Differential gene expression anaylsis -Ballgown
RNA-Seq ballgown stringtie
updated 7.7 years ago by ▴ 990 • written 7.7 years ago by ▴ 40
0
votes
0
replies
3.1k
views
Comment: C: Software installation error
7.8 years ago by amy16 ▴ 40
0
votes
1
reply
3.1k
views
Comment: C: Software installation error
7.8 years ago by amy16 ▴ 40
0
votes
1
reply
3.1k
views
Comment: C: Software installation error
7.8 years ago by amy16 ▴ 40
0
votes
1
reply
3.1k
views
Comment: C: Software installation error
7.8 years ago by amy16 ▴ 40
0
votes
10
replies
3.1k
views
Software installation error
R Bioconductor package
updated 7.8 years ago by 35k • written 7.8 years ago by ▴ 40
0
votes
0
replies
3.1k
views
Comment: C: Software installation error
updated 7.8 years ago by 153k • written 7.8 years ago by ▴ 40
0
votes
0
replies
1.5k
views
Alignment parameters within Hisat2
RNA-Seq alignment hisat2
updated 7.8 years ago by 20 • written 7.9 years ago by ▴ 40
0
votes
1
reply
3.0k
views
Comment: C: Ballgown library load
7.8 years ago by amy16 ▴ 40
2
votes
5
replies
3.0k
views
Ballgown library load
RNA-Seq ballgown
updated 7.8 years ago by 35k • written 7.8 years ago by ▴ 40
0
votes
0
replies
1.6k
views
Comment: C: Differential gene expression
7.8 years ago by amy16 ▴ 40
2
votes
2
replies
1.6k
views
Differential gene expression
RNA-Seq ballgown tuxedo
updated 7.8 years ago by 45k • written 7.8 years ago by ▴ 40
0
votes
0
replies
1.8k
views
Comment: C: Stringtie output for DGE
7.9 years ago by amy16 ▴ 40
3
votes
1
reply
1.7k
views
RNA-seq biological replicates for DGE
RNA-Seq DGE
updated 7.9 years ago by 105k • written 7.9 years ago by ▴ 40
0
votes
1
reply
2.1k
views
Comment: C: BCFtools variant calling format
7.9 years ago by amy16 ▴ 40
1
vote
3
replies
2.1k
views
BCFtools variant calling format
RNA-Seq variant call
updated 7.9 years ago by 45k • written 7.9 years ago by ▴ 40
0
votes
1
reply
3.2k
views
Comment: C: StringTie's merge function
7.9 years ago by amy16 ▴ 40
3
votes
3
replies
3.2k
views
StringTie's merge function
RNA-Seq
updated 7.9 years ago by 89k • written 7.9 years ago by ▴ 40
2
votes
1
reply
1.8k
views
Misamtch penalty in RNA-seq alignment
RNA-Seq hisat2
updated 7.9 years ago by 103k • written 7.9 years ago by ▴ 40
4
votes
4
replies
2.2k
views
RNA-seq biological replicates
RNA-Seq
updated 7.9 years ago by 89k • written 7.9 years ago by ▴ 40
0
votes
0
replies
2.6k
views
Comment: C: RNA-seq quality assessment
updated 7.9 years ago by 153k • written 7.9 years ago by ▴ 40
0
votes
0
replies
3.0k
views
Comment: C: genome index file
7.9 years ago by amy16 ▴ 40
0
votes
0
replies
2.6k
views
Comment: C: RNA-seq quality assessment
7.9 years ago by amy16 ▴ 40
2
votes
5
replies
2.6k
views
RNA-seq quality assessment
RNA-Seq
updated 7.9 years ago by ★ 1.4k • written 7.9 years ago by ▴ 40
0
votes
0
replies
1.3k
views
Major QTL of resistance
qtl biparental mapping
7.9 years ago by amy16 ▴ 40
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