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Showing :
questions
2
votes
7
replies
850
views
How to scrap PlasmoDB website
plasmoDB
rvest
tidyr
8 weeks ago by
rohitsatyam102
▴ 920
1
vote
6
replies
2.3k
views
CellRanger output more cells than specified using --force-cells? Why?
scRNA-seq
cellranger
updated 6 months ago by
scideas
▴ 30 • written 15 months ago by
rohitsatyam102
▴ 920
1
vote
0
replies
412
views
How to calculate reliable Ka/Ks or dN/dS ratio for genes of interest from VCF file
dnds
kaks
VCF
7 months ago by
rohitsatyam102
▴ 920
4
votes
4
replies
819
views
Why number of interactions decreased in current string database for plasmodium
string
interactions
ppi
updated 8 months ago by
damian.szk
▴ 80 • written 8 months ago by
rohitsatyam102
▴ 920
0
votes
4
replies
574
views
Coverage observed in introns in the Knockdown genes but not in knockout genes
RNA-seq
STAR
IGV
8 months ago by
rohitsatyam102
▴ 920
4
votes
10
replies
1.0k
views
How to scrape this MPMP database?
rvest
html
web-scrapping
updated 10 months ago by
Ram
44k • written 10 months ago by
rohitsatyam102
▴ 920
0
votes
4
replies
892
views
X-axis order changes in Mirrored Stacked Bar Plot
ggplot2
updated 13 months ago by
Basti
★ 2.0k • written 13 months ago by
rohitsatyam102
▴ 920
0
votes
1
reply
636
views
Choosing background for ORA using scrnaseq
scRNA-seq
RNA-seq
ORA
updated 15 months ago by
Ram
44k • written 15 months ago by
rohitsatyam102
▴ 920
2
votes
1
reply
599
views
Producing Bulk samples from 10X data
rnaseq
scrnaseq
deseq2
bulk
seurat
updated 15 months ago by
ATpoint
85k • written 15 months ago by
rohitsatyam102
▴ 920
0
votes
1
reply
577
views
bcftools unable to tag poor variant calls properly
bcftools
gatk
vafator
updated 17 months ago by
Ram
44k • written 21 months ago by
rohitsatyam102
▴ 920
0
votes
3
replies
1.6k
views
Tool to combine Germline Variant call from different variant callers
haplotypecaller
gatk
snps
22 months ago by
rohitsatyam102
▴ 920
0
votes
0
replies
482
views
Queries regarding SARS-CoV2 GISAID Genomes Submission
wf-artic
COVID
GISAID
2.1 years ago by
rohitsatyam102
▴ 920
6
votes
5
replies
2.0k
views
how to pass trimmed fastP output to bwa in Nextflow
fastp
bwa
nextflow
2.1 years ago by
rohitsatyam102
▴ 920
0
votes
4
replies
1.6k
views
convert a list of plotly plots to an HTML output
ggplot2
bam
plotly
coverage
updated 2.1 years ago by
swbarnes2
14k • written 2.1 years ago by
rohitsatyam102
▴ 920
5
votes
4
replies
2.7k
views
bcl2fastq dumps most of the reads as undetermined
bcl2fastq
2.1 years ago by
rohitsatyam102
▴ 920
2
votes
6
replies
4.1k
views
reduce space between X-axis ticks
R
GSEA
2.1 years ago by
rohitsatyam102
▴ 920
0
votes
0
replies
451
views
Make parts of process run once and other parts as loop
nextflow
sars
nextclade
covid
2.3 years ago by
rohitsatyam102
▴ 920
6
votes
2
replies
1.2k
views
Nextflow printing help message even when params.help is false
nextflow
align
bwa
alignment
2.3 years ago by
rohitsatyam102
▴ 920
0
votes
6
replies
1.7k
views
Nextflow runs Successfully but output files are empty. How to debug?
nextflow
bcftools
2.3 years ago by
rohitsatyam102
▴ 920
3
votes
3
replies
2.7k
views
Fastqc in nextflow run only one pair of fastq.gz file and not on all Fastq files
nextflow
fastqc
updated 2.3 years ago by
ATpoint
85k • written 2.3 years ago by
rohitsatyam102
▴ 920
3
votes
5
replies
2.5k
views
Using shell command in Nextflow DSL=2 for BWA mem aligner
nextflow
alihnment
align
bwa
2.4 years ago by
rohitsatyam102
▴ 920
3
votes
1
reply
701
views
GO Term Analysis in scRNASeq data with low number of genes expressed
scrnaseq
Seurat
updated 2.4 years ago by
mark.ziemann
★ 1.9k • written 2.4 years ago by
rohitsatyam102
▴ 920
1
vote
0
replies
1.0k
views
Interpreting the Jackstraw plot of Seurat
genomics
seurat
plot
scrnaseq
2.8 years ago by
rohitsatyam102
▴ 920
5
votes
5
replies
3.1k
views
How to select nFeature parameter of SelectIntegrationFeatures function in Seurat
scrnaseq
Seurat
updated 4 months ago by
Milly
• 0 • written 2.8 years ago by
rohitsatyam102
▴ 920
0
votes
0
replies
570
views
How to update gff/gtf files after using Mauve Config Mover
assembly
genome
Mauve
2.8 years ago by
rohitsatyam102
▴ 920
2
votes
3
replies
1.5k
views
Quick questions about Alevin and AlevinQC
alevinqc
alevin
updated 3.2 years ago by
ATpoint
85k • written 3.2 years ago by
rohitsatyam102
▴ 920
2
votes
2
replies
931
views
How to use RINalyzer plugin in cytoscape
cytoscape
RINalyzer
networks
updated 3.4 years ago by
Scooter
▴ 280 • written 3.4 years ago by
rohitsatyam102
▴ 920
2
votes
8
replies
1.6k
views
Parsing Dates from Multiple Websites
R
updated 3.6 years ago by
cpad0112
21k • written 3.6 years ago by
rohitsatyam102
▴ 920
0
votes
1
reply
1.9k
views
Which VCF's to use for BQSR in GATK
GATK
BQSR
next-gen-sequencing
updated 20 months ago by
Ram
44k • written 4.8 years ago by
rohitsatyam102
▴ 920
0
votes
0
replies
732
views
MNAse-Seq Dataset for Different Cancer Types
Cancer
bigwig
Mnaseseq
updated 20 months ago by
Ram
44k • written 4.0 years ago by
rohitsatyam102
▴ 920
0
votes
0
replies
684
views
RNAseq of rice is super weird
rna-seq
RNA-Seq
sequence
genome
4.2 years ago by
rohitsatyam102
▴ 920
2
votes
1
reply
3.3k
views
What packages/tools are available to use SJ.out.tab file obtained from STAR
RNA-Seq
R
next-gen
sequence
rna-seq
updated 4.2 years ago by
brown.annaleigh
▴ 10 • written 4.2 years ago by
rohitsatyam102
▴ 920
3
votes
3
replies
1.6k
views
Does it matters whether we give FASTA or FASTq files to STAR
RNA-Seq
rna-seq
alignment
updated 4.2 years ago by
swbarnes2
14k • written 4.2 years ago by
rohitsatyam102
▴ 920
5
votes
6
replies
1.0k
views
Will it be fine if the benchmarking of an assembler/aligner is performed using a single chromosome of Human
assembly
sequence
alignment
genome
next-gen
updated 4.2 years ago by
JC
13k • written 4.2 years ago by
rohitsatyam102
▴ 920
4
votes
4
replies
1.7k
views
What tools/ commands must be used for time and memory usage estimation of an aligner
alignment
assembly
next-gen
updated 4.2 years ago by
shelkmike
★ 1.4k • written 4.2 years ago by
rohitsatyam102
▴ 920
1
vote
2
replies
1.6k
views
Processing GFF file for feature extraction
assembly
sequence
Assembly
gene
4.3 years ago by
rohitsatyam102
▴ 920
0
votes
0
replies
760
views
EULER-SR throws error NULL was not declared in this scope
assembly
updated 4.3 years ago by
h.mon
35k • written 4.3 years ago by
rohitsatyam102
▴ 920
7
votes
10
replies
2.0k
views
How to download lakhs of abstracts in Batch for text mining study
R
gene
4.3 years ago by
rohitsatyam102
▴ 920
0
votes
2
replies
979
views
From where to download human proteome atlas raw data
RNA-Seq
updated 4.3 years ago by
jaro.slamecka
▴ 270 • written 4.3 years ago by
rohitsatyam102
▴ 920
0
votes
0
replies
526
views
From Where to get tagSNPs file?
R
gene
bioconductor
updated 4.4 years ago by
zx8754
12k • written 4.4 years ago by
rohitsatyam102
▴ 920
0
votes
1
reply
1.1k
views
DEXSeq gives most of the reads as "_empty"
DexSeq
RNA-Seq
next-gen
alignment
software error
updated 4.4 years ago by
Biostar
20 • written 4.5 years ago by
rohitsatyam102
▴ 920
1
vote
1
reply
1.1k
views
Help required to understand Hi-C data and its Usage
Hi-C
updated 21 months ago by
Ram
44k • written 4.4 years ago by
rohitsatyam102
▴ 920
0
votes
6
replies
1.3k
views
How to find if our enhancer gene pair fall within TAD
sequencing
R
genome
gene
updated 4.4 years ago by
ancient_learner
▴ 680 • written 4.4 years ago by
rohitsatyam102
▴ 920
5
votes
2
replies
2.0k
views
What does minoverlap = 1L means?
gene
R
annotatr
updated 4.4 years ago by
ATpoint
85k • written 4.4 years ago by
rohitsatyam102
▴ 920
2
votes
3
replies
755
views
Genomics regions that common to atleast 10 cell types
bedtools
bedops
genome
bed
sequence
updated 20 months ago by
Ram
44k • written 4.5 years ago by
rohitsatyam102
▴ 920
6
votes
7
replies
2.1k
views
DEXSeq aggregates two different genes together
dexseq
RNA-Seq
rna-seq
updated 4.5 years ago by
Kevin Blighe
88k • written 4.6 years ago by
rohitsatyam102
▴ 920
6
votes
7
replies
1.4k
views
TERF2 shRNA silencing is visible in WB and qPCR but not reflected in PE RNASeq
RNA-Seq
rna-seq
genome
next-gen
4.6 years ago by
rohitsatyam102
▴ 920
1
vote
3
replies
1.5k
views
Confusion regarding 7th and 8th column of FANTOM5 Enhancer Coordinates BED File
enhancer
genome
alignment
4.7 years ago by
rohitsatyam102
▴ 920
1
vote
5
replies
1.7k
views
How to correctly generate alignment Stat in RNA-Seq
RNA-Seq
sequencing
alignment
rna-seq
updated 4.8 years ago by
brianj.park
▴ 60 • written 4.8 years ago by
rohitsatyam102
▴ 920
2
votes
3
replies
1.3k
views
Ambiguous fields in FANTOM 5 Enhancer_TSS_association.bed file
RNA-Seq
gene
genome
updated 4.9 years ago by
Corentin
▴ 610 • written 4.9 years ago by
rohitsatyam102
▴ 920
59 results • Page
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