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questions
0
votes
0
replies
332
views
Comparing genome sizes of MAGs having different genome completeness.
Metagenome
MAGs
Bacteria
21 months ago by
Naren
▴ 1000
3
votes
6
replies
7.4k
views
Problem accessing SRA data using sratoolkit.
sra-toolkit
updated 3.8 years ago by
elbakri.fatimazahrae
• 0 • written 8.6 years ago by
Naren
▴ 1000
31
votes
12
replies
16k
views
12 follow
How To Do Alignment, Stop Codon Removal And Dn/Ds Calulation In One Go?
paml
updated 22 months ago by
sunnykevin97
▴ 980 • written 11.2 years ago by
Naren
▴ 1000
2
votes
1
reply
2.6k
views
qiime: Bacterial abundances from processed 16s reads
next-gen
sequencing
updated 5.6 years ago by
Ram
43k • written 8.2 years ago by
Naren
▴ 1000
0
votes
4
replies
2.3k
views
What is unique identifier for organism in NCBI gbff file?
genome
sequence
updated 6.3 years ago by
Michael
54k • written 6.3 years ago by
Naren
▴ 1000
10
votes
6
replies
6.0k
views
How To Find The Pan Genome Of 30 Bacterial Strains
genome
bacteria
updated 19 months ago by
Ram
43k • written 11.5 years ago by
Naren
▴ 1000
2
votes
1
reply
2.8k
views
Calculating relative abundances of bactria in healthy human gut from 16s reads
bacteria
16srRNA
updated 21 months ago by
Ram
43k • written 8.3 years ago by
Naren
▴ 1000
4
votes
3
replies
2.0k
views
PICRUSt run fails to start.
next-gen
sequencing
software error
updated 7.8 years ago by
5heikki
11k • written 7.8 years ago by
Naren
▴ 1000
0
votes
0
replies
1.6k
views
Assigning function and pathway to bacterial gene vs eukaryotic genes.
sequence
genome
sequencing
gene
7.8 years ago by
Naren
▴ 1000
4
votes
8
replies
15k
views
How To Decide Best Docking Conformation From Autodock Results?
docking
updated 7.9 years ago by
Arindam Ghosh
▴ 510 • written 10.9 years ago by
Naren
▴ 1000
1
vote
2
replies
3.4k
views
Does QIIME OTU Table gives idea about relative abundance?
sequencing
updated 8.1 years ago by
fanli.gcb
▴ 730 • written 8.1 years ago by
Naren
▴ 1000
3
votes
1
reply
5.7k
views
How To Calculate Genome Size From Scaffolds?
updated 8.3 years ago by
Biostar
20 • written 10.4 years ago by
Naren
▴ 1000
14
votes
11
replies
8.9k
views
sra-toolkit not working
fastq
sra-toolkit
updated 20 months ago by
Ram
43k • written 8.4 years ago by
Naren
▴ 1000
8
votes
5
replies
2.0k
views
Where should this tool be published?
Pan-genome-tool
usearch
updated 19 months ago by
Ram
43k • written 8.6 years ago by
Naren
▴ 1000
3
votes
2
replies
4.8k
views
How Much Time Is Required For 1 Nanosecond Md Simulation.
updated 8.6 years ago by
Biostar
20 • written 11.0 years ago by
Naren
▴ 1000
1
vote
1
reply
2.9k
views
Problem In Getting Multiple Genome Circular Map By Cg-View.
visualization
updated 15 months ago by
Ram
43k • written 11.2 years ago by
Naren
▴ 1000
6
votes
3
replies
4.2k
views
Sample ORTHOMCL run on my Fasta file.
orthomcl-clustering
genome
orthoMCL
sequence
updated 14 months ago by
Ram
43k • written 9.0 years ago by
Naren
▴ 1000
2
votes
4
replies
3.6k
views
How to convert phylip tree format in text format to png image with perl.
phylip
phylogeny
updated 2.1 years ago by
Ram
43k • written 9.4 years ago by
Naren
▴ 1000
9
votes
10
replies
10k
views
Phylogenetic Analysis By Maximum Likelihood (Paml) : Upon Phylip Input Yn00.Clt Program Not Running.
paml
updated 2.1 years ago by
Ram
43k • written 11.2 years ago by
Naren
▴ 1000
13
votes
5
replies
8.8k
views
What OrthoMCL input file and output looks like?
clustering-algorithms
orthomcl
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
Naren
▴ 1000
9
votes
6
replies
3.9k
views
How To Derive Pan Proteome
updated 9.9 years ago by
Biostar
20 • written 11.4 years ago by
Naren
▴ 1000
2
votes
3
replies
2.9k
views
Which database to select for bacterial ortholog and singleton detection with ncbi-blast+?
ncbi-blast-plus
updated 2.6 years ago by
Ram
43k • written 10.0 years ago by
Naren
▴ 1000
1
vote
2
replies
3.5k
views
Orthomcl or CD-HIT for Protein Clustering.
cd-hit
orthomcl
clustering
updated 2.6 years ago by
Ram
43k • written 10.0 years ago by
Naren
▴ 1000
1
vote
1
reply
2.1k
views
What Parameter Is Best To Decide Function Annoatations Of Proteins?
10.2 years ago by
Naren
▴ 1000
1
vote
1
reply
4.8k
views
How To Set Own Protein Fasta File As Database In Ncbi-Blast-2.2.28
updated 10.4 years ago by
Michael
54k • written 10.4 years ago by
Naren
▴ 1000
5
votes
3
replies
6.1k
views
Core And Pan Genome Comparative Analysis
updated 10.8 years ago by
Biostar
20 • written 11.4 years ago by
Naren
▴ 1000
1
vote
1
reply
2.3k
views
How To Select Best Blastp Hit For Kegg Annotation?
kegg
updated 11.0 years ago by
justinhaselbach
▴ 250 • written 11.0 years ago by
Naren
▴ 1000
3
votes
4
replies
2.3k
views
How To Find Out Horizontally Transferred Genes In Bacteria?
updated 11.0 years ago by
Michael
54k • written 11.0 years ago by
Naren
▴ 1000
5
votes
4
replies
7.1k
views
How To Generate Phylogeny Tree, Based On Snps?
snp
phylogeny
updated 11.2 years ago by
Bioch'Ti
★ 1.1k • written 11.2 years ago by
Naren
▴ 1000
1
vote
3
replies
5.1k
views
How To Draw Phylogeny Tree Using Mauve Output?
phylogeny
updated 11.2 years ago by
skymningen
▴ 330 • written 11.2 years ago by
Naren
▴ 1000
1
vote
3
replies
5.2k
views
Is Snp Data Obtained From Mauve Progressive Alignment Useful For Phylogeny Of Bacterial Whole Genomes?
snp
phylogeny
updated 11.2 years ago by
aidan-budd
1.9k • written 11.2 years ago by
Naren
▴ 1000
0
votes
5
replies
3.2k
views
Whole Genome Snp And Core Genome Snp
snp
genome
11.2 years ago by
Naren
▴ 1000
9
votes
6
replies
3.7k
views
Phylogenetic Analysis By Maximum Likelihood (Paml)
phylogeny
11.3 years ago by
Naren
▴ 1000
20
votes
13
replies
11k
views
6 follow
Software For Analysis Of Bacterial Genomics.
genome
analysis
updated 11.3 years ago by
Jeroen Van Goey
2.3k • written 11.3 years ago by
Naren
▴ 1000
5
votes
5
replies
3.4k
views
What Is The Best Way To Find Core Genome Of Many Bacteria.
genome
updated 11.4 years ago by
Neilfws
49k • written 11.4 years ago by
Naren
▴ 1000
3
votes
5
replies
2.5k
views
What Is The Reason For Getting The "Max Hsp Reached" Error When Using The Ncbi Blast
updated 11.4 years ago by
vijay
★ 1.6k • written 11.4 years ago by
Naren
▴ 1000
8
votes
3
replies
2.6k
views
Problems Running The Ncbi-Blast Tools
updated 11.5 years ago by
Lee Katz
★ 3.1k • written 11.5 years ago by
Naren
▴ 1000
37 results • Page
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