updated 2 days ago by
Xiaofen
•
0
•
written 2 days ago by
toddknutson
▴
60
0
votes
2
replies
212
views
2
votes
2
replies
218
views
updated 5 days ago by
GenoMax
142k
•
written 5 days ago by
ahmad.sajad4541
•
0
1
vote
2
replies
245
views
0
votes
2
replies
231
views
2 days ago by
Ahiad Chen Zion
•
0
1
vote
2
replies
166
views
4
votes
2
replies
260
views
4 days ago by
lorena9132
▴
10
0
votes
2
replies
456
views
updated 1 day ago by
Javier
•
0
•
written 3 months ago by
fra.r.silvestro
▴
10
1
vote
2
replies
1.1k
views
4 days ago by
Zhenyu Zhang
★
1.2k
2
votes
2
replies
2.6k
views
2
votes
2
replies
160
views
1 day ago by
Zeng Jingyu
▴
60
0
votes
2
replies
264
views
0
votes
2
replies
732
views
updated 6 days ago by
clairechung112
•
0
•
written 23 months ago by
amahdi779
•
0
1
vote
2
replies
154
views
1
vote
2
replies
240
views
0
votes
2
replies
143
views
1 day ago by
njornet
▴
20
0
votes
2
replies
203
views
1
vote
1
reply
82
views
0
votes
1
reply
246
views
updated 2 days ago by
andres.firrincieli
3.6k
•
written 3 days ago by
Antonio
•
0
1
vote
1
reply
154
views
1
vote
1
reply
204
views
1
vote
1
reply
105
views
2
votes
1
reply
115
views
1
vote
1
reply
198
views
updated 2 days ago by
geneontologyhelp
▴
400
•
written 3 days ago by
beshka194
•
0
0
votes
1
reply
106
views
updated 12 hours ago by
GenoMax
142k
•
written 13 hours ago by
rackbersingh
•
0
0
votes
1
reply
185
views
4
votes
1
reply
235
views
0
votes
1
reply
547
views
updated 6 days ago by
clairechung112
•
0
•
written 2.2 years ago by
Bogdan
★
1.4k
1
vote
1
reply
189
views
updated 4 days ago by
Ram
43k
•
written 6 days ago by
adi.gershon1
•
0
0
votes
1
reply
132
views
updated 22 hours ago by
Bastien Hervé
5.3k
•
written 1 day ago by
sooni
▴
20
0
votes
1
reply
217
views
updated 17 hours ago by
Ram
43k
•
written 4 days ago by
starswillfade
▴
10
0
votes
1
reply
158
views
updated 6 days ago by
Mensur Dlakic
★
27k
•
written 6 days ago by
Arun Sai Kumar
•
0
1
vote
1
reply
145
views
updated 6 days ago by
Ram
43k
•
written 7 days ago by
marco.barr
▴
100
2
votes
1
reply
303
views
updated 5 days ago by
chrchang523
10k
•
written 9 days ago by
8armed
▴
10
0
votes
1
reply
202
views
0
votes
1
reply
242
views
updated 1 day ago by
mizraelson
▴
60
•
written 9 days ago by
yueli7
▴
250
0
votes
1
reply
522
views
0
votes
1
reply
198
views
0
votes
1
reply
235
views
updated 5 days ago by
Thanujay S
•
0
•
written 5 days ago by
yahn
•
0
0
votes
1
reply
216
views
updated 3 days ago by
marco.barr
▴
100
•
written 5 days ago by
Natali
•
0
0
votes
1
reply
189
views
0
votes
1
reply
300
views
updated 3 days ago by
aaron.stevens
•
0
•
written 3 months ago by
sativus
▴
20
0
votes
1
reply
786
views
0
votes
1
reply
259
views
3 days ago by
Expert
▴
10
0
votes
1
reply
127
views
0
votes
1
reply
518
views
1
vote
1
reply
168
views
1
vote
1
reply
351
views
0
votes
1
reply
160
views
0
votes
1
reply
209
views
0
votes
1
reply
114
views
updated 6 hours ago by
marco.barr
▴
100
•
written 15 hours ago by
odi
▴
10
Recent Votes
Recent Locations •
All
United Kingdom, 1 minute ago
Bologna, 2 minutes ago
United States, 2 minutes ago
United Kingdom, 3 minutes ago
Perth, Australia, 3 minutes ago
India, 3 minutes ago
Russia, 5 minutes ago
Recent Awards •
All
Popular Question to
ManuelDB
▴
80
Popular Question to
nkls063408
•
0
Popular Question to
rj.rezwan
•
0
Scholar to
Pierre Lindenbaum
161k
Popular Question to
Albert
•
0
Popular Question to
Gordon Smyth
★
7.1k
Recent Replies
Comment: How to analyze Infinium Mouse Methylation BeadChip array data?
by
Tawny
▴
180
Did you get this figured out? I am having the same error in R.
Answer: JASPAR2024_getMatrixSet error
by
Raghad
•
0
Try this:
#Read the motifs
library(JASPAR2024)
library(TFBSTools)
jaspar <- JASPAR2024()
sq24 <- RSQLite::dbCo…
Answer: How to convert normalized BigWig file to count matrix?
by
ATpoint
82k
It's not possible. Gene counts are a region aggregate, bigwigs are a per-base readout and you cannot use normalized counts for mentioned to…
Comment: bcftools - reducing to "sites-only"?
by
Pierre Lindenbaum
161k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Comment: bcftools - reducing to "sites-only"?
by
Matthew
•
0
Thank you Pierre!
Not sure why I didn't notice that (I should have)
Comment: How to convert normalized BigWig file to count matrix?
by
Pierre Lindenbaum
161k
bigwig is chrom/start/end/value . what kind of matrix do you want ?
Comment: How to convert normalized BigWig file to count matrix?
by
feather-W
•
0
I want to use the matrix derived from bigwig files to perform different analysis by DESeq2 or edgeR.
Answer: Have you ever obtained user guide of ExomeCNV?
by
michael.s
▴
10
I have uploaded the ExomeCNV (v1.4) user manual [here][1].
[1]: https://fastupload.io/hZbU
Answer: Server or aws cloud- which one is better for gatk pipeline
by
GenoMax
142k
I assume you mean "server" as in local hardware that you own/control since "cloud" is a just bunch of servers on internet that you rent (pa…
Answer: Server or aws cloud- which one is better for gatk pipeline
by
Michael
54k
I think that is more a matter of convenience and legality. It mostly depends on who pays for it and what you prefer. Both solutions should …
Comment: How to solve the error 'ERROR::MATE_NOT_FOUND:Found xxx unpaired mates' when ru
by
Pierre Lindenbaum
161k
> could you please explain what the collate does?
http://www.htslib.org/doc/samtools-collate.html
Comment: ComBat_Seq stuck adjusting the data
by
Jaïr
•
0
Same keeps happening to me; but it is weird, I corrected the batch effect with the same exact function a few months ago and worked fine. I …
Comment: How to solve the error 'ERROR::MATE_NOT_FOUND:Found xxx unpaired mates' when ru
by
Lila M
★
1.2k
Thank you for the feedback! I already used just the `samtools fastq -1 R1.fq.gz -2 R2.fq.gz -s Rx.fq.gz -0 R0.fq.gz`. Could you please exp…
Comment: Nextflow: how to get the process work dir, within the process
by
Pierre Lindenbaum
161k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Answer: How to solve the error 'ERROR::MATE_NOT_FOUND:Found xxx unpaired mates' when ru
by
Pierre Lindenbaum
161k
faster use samtools collate+ fastq
samtools collate -uOn128 in.bam TMPDIR | samtools fastq -1 R1.fq.gz -2 R2.fq.gz -s Rx.fq.gz -0 R…
Traffic: 2548 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6