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186 results • Page
4 of 4
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0
votes
0
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115
views
handling bio replicates for chromHMM
replicates
chromHMM
4 days ago by
Hasan_Daaboul
• 0
0
votes
0
replies
103
views
Challenges of Affymetrix probe IDs for grouping similar genes to calculate their mean
R
Mean
Affymetrix
Probes
Grouping
3 days ago by
Maryam
• 0
0
votes
0
replies
83
views
ENCORI or starBase : ceRNA data retrieval using Web API and curl
ceRNA
ENCORI
curl
microRNA
starBase
3 days ago by
V_Vibes
• 0
2
votes
0
replies
137
views
Herald:
The Biostar Herald for Monday, May 20, 2024
herald
3 days ago by
Biostar
2.8k
0
votes
0
replies
104
views
transcriptome annotation
annotation
trinity
transcriptome
updated 3 days ago by
Ram
44k • written 3 days ago by
Asim Bin Arshad
• 0
0
votes
0
replies
100
views
Is it possible to keep gene_id and gene_name columns using Seurat::Read10X?
Seurat
single-cell
scRNA-seq
updated 3 days ago by
Ram
44k • written 3 days ago by
ev97
▴ 20
0
votes
0
replies
97
views
News:
Online course: Network analysis in Systems Biology with R/Bioconductor
Bioconductor
Systems-Biology
Network-Analysis
R
updated 3 days ago by
Ram
44k • written 3 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
177
views
How to deal with possibly important predictors omitted during the building of an OLS multivariant linear regression model?
multivariant-linear-regression
updated 3 days ago by
Ram
44k • written 3 days ago by
JorgeVallejo
▴ 20
0
votes
0
replies
121
views
problems in installing rDock
rDock
updated 3 days ago by
Ram
44k • written 4 days ago by
Rodolfo Adrián
• 0
0
votes
0
replies
88
views
How to recover the entire sequence from all_contig_annotations.csv?
VDJ
single-cell
TCR-seq
cellranger
10x
2 days ago by
dawnyipingzou
• 0
0
votes
0
replies
88
views
Calculated LAI is too large
annotation
LAI
assembly
TE
genome
2 days ago by
Yao
▴ 30
0
votes
0
replies
90
views
Last step of metagenome analysis before visualization
metagenome
python
analyis
2 days ago by
Ayda Ecem
• 0
0
votes
0
replies
104
views
Linking AMR Genes to Taxonomy in Soil Metagenomics
metagenomics
bacteria
wgs
AMR
resistome
updated 2 days ago by
GenoMax
142k • written 2 days ago by
LuciaNhu
• 0
0
votes
0
replies
127
views
Job:
PhD position for metagenomics analysis at the University of Udine
metagenomics
updated 2 days ago by
Ram
44k • written 2 days ago by
Fabio Marroni
★ 3.0k
3
votes
0
replies
117
views
Comparing ATAC-seq narrowPeak Files from Chicken and Mouse
liftOver
ATAC-seq
csaw
updated 2 days ago by
Ram
44k • written 2 days ago by
Rafael Soler
★ 1.2k
0
votes
0
replies
93
views
News:
Online course- Advanced Python for Life Sciences
Python-Programming
Data-Visualisation
Machine-Learning
updated 2 days ago by
Ram
44k • written 2 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
98
views
Kegg Pathways to Circos
Genomics
KEGG
Circos
1 day ago by
dlera.lozano
▴ 10
0
votes
0
replies
87
views
Rescaling normalized enrichment score (NES)
heatmap
1 day ago by
CTLong
▴ 110
0
votes
0
replies
111
views
DIFFBIND boxplot results, p value not significant
DiffBind
ChIP-seq
1 day ago by
RD
▴ 10
0
votes
0
replies
83
views
How to find nucleotide changes and the predicted effect when comparing two genomes
BLAST
alignment
updated 1 day ago by
Ram
44k • written 1 day ago by
Melissa
• 0
0
votes
0
replies
92
views
KEGG pathway enrichment analysis in Zea mays with R
KEGG
Zea-mays
R
updated 1 day ago by
Ram
44k • written 1 day ago by
letizia.ottaviani
• 0
0
votes
0
replies
94
views
News:
Bioinformatic Analysis of Transposable Elements course
Genome-Annotation
TE
Manual-Curation
Transposable-Elements
updated 1 day ago by
Ram
44k • written 1 day ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
104
views
MAFFT alignment report
RNA
Alignment
MAFFT
Linux
updated 1 day ago by
Ram
44k • written 1 day ago by
Ghada
• 0
0
votes
0
replies
77
views
Cancer vs Normal Cell Classification Based on SNVs
cancer
23 hours ago by
dglad
• 0
0
votes
0
replies
72
views
Phyloseq returning black bars for plot_bar
phyloseq
bioconductor
R
20 hours ago by
Jacob
• 0
0
votes
0
replies
66
views
miloR - object 'as.SimpleList' of mode 'function' was not found when running calcNhoodDistance
scRNA-seq
seurat
miloR
16 hours ago by
shuaizh117
▴ 10
0
votes
0
replies
74
views
Extracting haplotype-specific annotations from splicing graph
vg
16 hours ago by
Juhyun
• 0
0
votes
0
replies
91
views
Subset of ATAC-seq peaks has high variance
atac-seq
edgeR
R
normalization
14 hours ago by
Tim
• 0
0
votes
0
replies
41
views
Assigning Micro-C read pairs to nucleosomes called from MNase-seq data?
Hi-C
MNase-Seq
12 hours ago by
Linus
• 0
0
votes
0
replies
48
views
GWAS or QTL mapping in RIL population
GWAS
RIL
10 hours ago by
韩雨
• 0
0
votes
0
replies
48
views
Tools for chromosomal aneuploidy detection
genetics
aneuploidy
NGS
human
8 hours ago by
adarsh_pp
▴ 40
0
votes
0
replies
57
views
VEP annotation tool: "." isn't numeric in addition (+)
VEP
VCF
updated 5 hours ago by
Ram
44k • written 10 hours ago by
emmanouil.a
▴ 120
2
votes
0
replies
72
views
Job:
Permanent Position as Researcher/Computational Biologist at the National Genomics Infrastructure (Sweden)
Genomics
Sequencing
Sweden
Stockholm
SciLifeLab
5 hours ago by
Matthias Zepper
4.6k
0
votes
0
replies
62
views
Job:
2 PhD Students in single-cell bioinformatics
NGS
4 hours ago by
mtabaka
• 0
0
votes
0
replies
5
views
abundance_estimates_to_matrix.pl in Trinity is not generating any matrices / output
trinity
updated 5 minutes ago by
GenoMax
142k • written 10 minutes ago by
jway
• 0
1
vote
0
replies
177
views
News:
Course on Manual Genome Curation
Genome-Assembly
Pretext-View
Manual-Genome-Curation
updated 6 days ago by
Ram
44k • written 7 days ago by
carlopecoraro2
★ 2.5k
186 results • Page
4 of 4
Recent Votes
A: VCF files: Change Chromosome Notation
Comment: Z score
Comment: Mouse or Rat Gene Expression Data Similar to GTEx
Answer: Mouse or Rat Gene Expression Data Similar to GTEx
Answer: Mouse or Rat Gene Expression Data Similar to GTEx
Answer: Mouse or Rat Gene Expression Data Similar to GTEx
A: VCF files: Change Chromosome Notation
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Popular Question
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Erika
• 0
Teacher
to
GenoMax
142k
Popular Question
to
bioinfo
▴ 150
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a.bibek52
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dsull
★ 6.1k
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adarsh_pp
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Recent Replies
Answer: PCA plot no distinct cluster. Only p < 0.05 indicates significant DEGs, while ad
by
swbarnes2
14k
Never use uncorrected p-values with RNASeq. Your PCA is suggesting that your sample groups are not very different, and the DEG tests con…
Comment: What is a good way to do gene differentials in single cell data where one group
by
ATpoint
82k
I would keep it transparent. Do DE by subsetting large to small group. Do that randomly many times, then either average stats or use some s…
Answer: Trying to understand warning from MACS2 about too few paired peaks and differing
by
jared.andrews07
★ 17k
Without looking at the actual sequence for each genome, my guess is that the Echinobase reference just matches much more closely to the org…
Comment: What do the transcript variant # mean in RefSeq?
by
Ram
44k
> It does not seem to be the longest transcript. Is it the canonical transcript? Longest == canonical. If you're looking for the transcrip…
Comment: Mouse or Rat Gene Expression Data Similar to GTEx
by
Shicheng Guo
★ 9.4k
Hi ATpoint, Thank you for your responses. My apologies if my inquiries have seemed one-sided. I greatly value the collaborative spirit of t…
Comment: Mouse or Rat Gene Expression Data Similar to GTEx
by
ATpoint
82k
Team? A team helps each other out. You only take help by posting your regular lazy do-my-work questions and never give anything back. Save …
Comment: What do the transcript variant # mean in RefSeq?
by
GenoMax
142k
> What do these correspond to? It does not seem to be the longest transcript. Is it the canonical transcript? Those are just different tra…
Answer: Mouse or Rat Gene Expression Data Similar to GTEx
by
jared.andrews07
★ 17k
MGI has a [Gene Expression Database](https://www.informatics.jax.org/expression.shtml) that'll largely get you what you want.
Comment: Difference in Bismark output methylation call files and coverage files
by
Papyrus
★ 2.9k
Your files end in `CpG_report` so they are the "genome-wide cytosine report output". If you look at the [Bismark documentation][1] you will…
Comment: Error when looping over multiple columns in a data frame in R
by
Mohamed Samir
▴ 30
Dear Jeremy, Thanks. What I could not understand why you wrote it like : cutpoint_results[[col_name]] ? Is it because it is a list result…
Comment: BEAST2.5 Chloroplast Divergence Time using Fossil Records
by
Ram
44k
Do not use all caps - it's bad etiquette. I've fixed things for you this time.
Comment: minfi::getQC - badsamplecutoff 10.5
by
Papyrus
★ 2.9k
I've recently also analyzed EPICv2 and have noticed that the log2 median intensities (and particularly the "uMed" channel), for an otherwis…
Comment: log2 fold change in RNA-seq analysis
by
May Ling
• 0
Thank you so much for the confirmation Sir! Appreciate that. I think the paragraph was trying to say that: a fold change greater than **…
Comment: Difference in Bismark output methylation call files and coverage files
by
skdv2522
• 0
Chr1 192 + 0 0 CG CGA Chr1 193 - 0 0 CG CGA Chr1 197 + 0 0 CG CGT Chr1 198 - 0 0 CG CGG Chr1 218 + 0 0 CG CGA Chr1 …
Comment: Error with BiocParallel. No barcodes files found
by
Pierre Lindenbaum
162k
cross-posted: https://stackoverflow.com/questions/78522566/ > Do not post on multiple forums - that is just bad etiquette. What's worse, y…
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