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189 results • Page
3 of 4
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0
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331
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Job:
Postdoctoral Researcher in Alzheimer's disease Genetics, Multi-Omics, and Imaging Biomarkers, St Louis, MO, USA
Multi-Omics
Imaging
Alzheimer
Genetics
3 days ago by
belloy
• 0
0
votes
2
replies
222
views
using RSEM with non Trinity assembly
SPAdes
Trinity
RSEM
3 days ago by
jen
• 0
0
votes
2
replies
315
views
Help doing differential expression analysis -experimental design and gProfiler TF interpretation-
gProfiler
mRNA
Differential-expression
TCGA
updated 2 days ago by
rajabolacuan
• 0 • written 9 days ago by
Camilo Andres
▴ 40
0
votes
1
reply
254
views
Diferences between TCGAbiolinks and cBioportal
R
TCGAbiolinks
cBioportal
updated 3 days ago by
Zhenyu Zhang
★ 1.1k • written 8 days ago by
jomagrax
▴ 40
1
vote
0
replies
99
views
Visualize and explore eventalign data against reference
igv
minimap
nanopolish
nanopore
ngs
3 days ago by
joe
▴ 390
0
votes
6
replies
366
views
Best practices for differential expression analysis with low-yield Nanopore/ONT direct cDNA data?
RNA-Seq
Nanopore
ONT
differential
expression
1 day ago by
tw_140
• 0
3
votes
2
replies
192
views
Running STAR on fastq file generated from a RNA-seq experiment
STAR
RNAseq
fastq
files
updated 3 days ago by
Darked89
4.5k • written 3 days ago by
achanda
• 0
2
votes
3
replies
298
views
DEseq2 input
DEseq2
updated 3 days ago by
ATpoint
78k • written 4 days ago by
r.shiasi3897
▴ 10
0
votes
1
reply
161
views
Combine Geoids
Geoids
NCBI
updated 3 days ago by
ATpoint
78k • written 4 days ago by
anasjamshed
▴ 120
1
vote
2
replies
242
views
Best practices for unstranded sequences in featureCounts
featurecounts
overlapping
unstranded
3 days ago by
Enrique
• 0
1
vote
1
reply
181
views
Choose between pvalue & pvalue.adj
volcanoplot
updated 3 days ago by
Istvan Albert
99k • written 3 days ago by
Guitout
• 0
0
votes
5
replies
308
views
HTseq reports missing attribute name
htseq
updated 1 day ago by
Istvan Albert
99k • written 3 days ago by
Bjorn
• 0
3
votes
0
replies
156
views
Herald:
The Biostar Herald for Monday, November 27, 2023
herald
3 days ago by
Biostar
2.3k
9
votes
15
replies
775
views
Construction of single sequence assembly out of contigs
Contigs
Bacteria
Genome
WGS
2 days ago by
analyst
▴ 10
4
votes
2
replies
1.9k
views
Masurca. Failed to pre-correct Nanopore data, please check your data!
Nanopore
Masurca
updated 4 days ago by
colindaven
5.7k • written 2.4 years ago by
kamanovae
▴ 100
0
votes
0
replies
97
views
Differentiate sequenced and imputed variants in BGEN files
imputation
bgen
ukb
4 days ago by
user230613
▴ 350
0
votes
4
replies
268
views
Species coverage in the NCBI protein NR database ?
NR
updated 3 days ago by
Istvan Albert
99k • written 4 days ago by
HERMAN
▴ 10
0
votes
7
replies
423
views
Issues while running htseq-count
Candida-glabrata
RNA-seq
htseq-count
4 days ago by
Foad
▴ 10
0
votes
0
replies
105
views
addPatternDensity to qsea object
maxDensityPattern
medip
qsea
4 days ago by
Jaykishan
• 0
1
vote
1
reply
166
views
Harmony integration PC variance explained
scRNA
integration
harmony
updated 2 days ago by
CTLong
▴ 20 • written 4 days ago by
e.iich
• 0
0
votes
3
replies
234
views
merged rs number information
merged
dbsnp
3 days ago by
sskimvd
• 0
2
votes
1
reply
155
views
Bedtools intersection
bedtools
bed
intersect
vcf
updated 4 days ago by
Pierre Lindenbaum
158k • written 4 days ago by
rejoeraymond776
▴ 10
0
votes
2
replies
202
views
RnBeads mean difference vs M-values
Methylation
updated 4 days ago by
Basti
★ 1.9k • written 4 days ago by
a.basitkhan1990
▴ 30
1
vote
2
replies
182
views
RnBeads which p-value to use
Methylation
RnBeads
updated 4 days ago by
ATpoint
78k • written 4 days ago by
a.basitkhan1990
▴ 30
1
vote
1
reply
166
views
Beginner differential methylation analysis
Methylation
updated 4 days ago by
Basti
★ 1.9k • written 4 days ago by
a.basitkhan1990
▴ 30
4
votes
8
replies
576
views
Docker: Pass reads file form host to container
docker
4 days ago by
davidmaimoun
▴ 50
2
votes
1
reply
239
views
EnhancedVolcano underrepresenting DEGs
R
updated 3 days ago by
Kevin Blighe
86k • written 4 days ago by
jabbari.parnian
▴ 30
4
votes
5
replies
1.7k
views
PyMOL: Gaps in protein structure yet shown by the sequence
PyMOL
structure
protein
updated 4 days ago by
pippo1980
• 0 • written 9 months ago by
spence.lank
▴ 10
0
votes
0
replies
113
views
[maftools]Too many multi_hit and missense mutation
maftools
gatk
MAF
data
WES
VCF
4 days ago by
jiazheng_lin
• 0
0
votes
1
reply
184
views
multiple condition and time course in RNA-seq
edgeR
RNA-Seq
DESeq2
updated 4 days ago by
i.sudbery
18k • written 5 days ago by
tiancaigg
▴ 30
0
votes
0
replies
125
views
Negative F statistics for sex check in plink
plink
check
sex
5 days ago by
kl
▴ 10
2
votes
4
replies
323
views
Should SMART-seq2 data be deduplicated in STAR?
SMART-seq2
4 days ago by
anlinli.napert
• 0
0
votes
3
replies
374
views
Extracting list of identical items from several excel files
from
excel
items
Extract
file
updated 5 days ago by
DonPhager
• 0 • written 5 days ago by
otieno43
▴ 20
1
vote
2
replies
263
views
Indexing by bowtie2 but aligning with STAR
STAR
mm10
Bowtie2
Alignment
Index
5 days ago by
Anojan
• 0
0
votes
1
reply
195
views
Chipseq peak calling and peak frequency region
chipseeker
macs2
updated 3 days ago by
Arup Ghosh
3.2k • written 5 days ago by
Mehwish
▴ 10
0
votes
3
replies
322
views
subset a bam file
bam
pysam
NGS
samtools
updated 5 days ago by
GenoMax
136k • written 6 days ago by
Ming
• 0
1
vote
1
reply
266
views
Forum:
want to work in open source project/project in bioinformatics
bioinformatics
project
updated 5 days ago by
Matthias Zepper
4.2k • written 5 days ago by
Afeef
• 0
0
votes
0
replies
173
views
Tutorial:
Making Tile plots to show Synonymous Non-Synonymous mutation fraction
mutation
ggplotify
geom_tile
ggplot2
6 days ago by
rohitsatyam102
▴ 780
0
votes
1
reply
249
views
issue in RNA -seq analysis
NGS
RNA-Seq
updated 6 days ago by
GenoMax
136k • written 6 days ago by
subhiksha
• 0
2
votes
3
replies
1.0k
views
How to identify the 300 kb upstream and downstream genes of lncRNAs?
RNA-Seq
lncRNA
target genes
upstream
downstream
updated 6 days ago by
SeguraChain
• 0 • written 3.0 years ago by
mathavanbioinfo
▴ 70
4
votes
6
replies
546
views
BLAST hits on viruses relate to different host than used
Phage
BLAST
Metagenomics
5 days ago by
DonPhager
• 0
0
votes
3
replies
344
views
Alternatives to Music2 for rnaseq deconvolution without disease scRNA dataset
scRNA
deconvolution
Music
Music2
bulk
updated 6 days ago by
ATpoint
78k • written 6 days ago by
manuelmourato25
• 0
1
vote
4
replies
425
views
SNPs of a specific mouse strain
snp
updated 5 days ago by
Matthias Zepper
4.2k • written 7 days ago by
darklings
▴ 560
0
votes
0
replies
227
views
The number of variations in the pan-genome is reduced compared to the variations in the input VCF file
vg
6 days ago by
Wenke
• 0
0
votes
3
replies
302
views
Annovar - Annotated file cells show string
annovar
6 days ago by
Roshan
• 0
2
votes
6
replies
477
views
Genotypes in vcf files
genotypes
vcf
updated 6 days ago by
Jeremy Leipzig
22k • written 6 days ago by
amy__
▴ 160
1
vote
1
reply
212
views
Genetic data QC prior to imputation
imputation
updated 6 days ago by
Raony Guimarães
★ 1.3k • written 6 days ago by
kl
▴ 10
4
votes
2
replies
273
views
Excel Pasting Question
Excel
updated 6 days ago by
Pierre Lindenbaum
158k • written 7 days ago by
Bweil2
▴ 10
0
votes
1
reply
245
views
MinKNOW software installation doubt for MinION Nanopore sequencing
MinKNOW
MinION
Nanopore
updated 6 days ago by
GenoMax
136k • written 7 days ago by
Soumajit
▴ 40
0
votes
1
reply
218
views
htShinyExample-5.3 - not working
htShiny
Oncoprint
InteractiveComplexHeatmap
updated 1 day ago by
Ram
41k • written 7 days ago by
bioinfo
▴ 60
189 results • Page
3 of 4
Recent Votes
Comment: How can I adjust Y-axis scale when making relative abundance box plot ?
Comment: How can I adjust Y-axis scale when making relative abundance box plot ?
Comment: How can I adjust Y-axis scale when making relative abundance box plot ?
Answer: 1000 genomes project reference panel - GRCh38
Answer: 1000 genomes project reference panel - GRCh38
Comment: IMPUTE2- Map file for custom reference panel
IMPUTE2- Map file for custom reference panel
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Comment: Yes .. BBMap can do that! - Part III clumpify (mark (and dedupe) duplicates with
by
jucosie
• 0
Hello, I am reviewing some old scripts in which I used clumpify.sh (BBMap 38.90) with the following parameters: ./clumpify.sh in1=$dir_c…
Comment: Problematic fastq files...How can we trust them?
by
Istvan Albert
99k
perhaps ask her about the origin of the data, how was the data postprocessed FASTQ data is a bit more resilient than other types of data a…
Answer: GO categorization
by
Istvan Albert
99k
If you have an organism that lacks the GO to gene mapping then you have to find a way to assign these terms to your genes. Basically your …
Comment: doubt about usage of megahit
by
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99k
you have not mentioned what kind of resources you have, how much data you have to process and what the expected genome/transcriptome sizes …
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78k
Then tell her to bring proper data. In the lab you also don't use buffers with mold growing in it, and in bioinformatics we don't start wit…
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Its not my data. An external researcher is visiting and she wanted from us to do some bioinformatics... The samples were not sequenced by u…
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Oh, I understand. Thank you so much for your help! The truth is that there is so much information, so many packages, libraries, tutorials,…
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Just to clarify: Many ML models are trained and executed using dedicated software libraries for machine learning and artificial intellige…
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78k
> I assume that maybe all these are fixable with a script but my question is, can we trust these files? Is it worth spending time and effor…
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sil_bioinfo
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My main idea is to be able to classify patients with active TB, LTBI and healthy patients as well as possible. The problem is that within t…
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They could have saved themselves a ton of money by sequencing this on a miseq.
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I think there are tools like ragtag https://github.com/malonge/RagTag that could help. you can also align your reads back to your new assem…
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Hi, did you find an effective solution for this problem? beside Agat and
Comment: An incomprehensible error with R package gggenes
by
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Thank you. I asked a stupid question.
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