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801 results • Page
4 of 17
Sort: Views
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Views
Votes
Replies
0
votes
0
replies
1.1k
views
Should batch correction be performed before or after feature selection in scRNA-seq
batch-effect
scRNA-seq
feature-selection
updated 29 days ago by
Ram
43k • written 5.0 years ago by
Lucy
▴ 140
2
votes
2
replies
1.1k
views
Can we directly use batch corrected gene expression (Bulk RNA-seq) for further downstream analyses?
RNA-Seq
batch-effect
updated 28 days ago by
Ram
43k • written 5.1 years ago by
tigeradab
▴ 60
3
votes
0
replies
1.1k
views
Tool:
Sars-Cov-2 Genome & ACE 2 Exploration
sequence
alignment
SNP
genome
12 days ago by
Ibrahim Tanyalcin
★ 1.2k
0
votes
3
replies
1.1k
views
Discrepancy between E() Values in Blastp Search - HELP
BLAST
E-value
Blastp
Protein
updated 29 days ago by
Ram
43k • written 5.4 years ago by
minasmayth
• 0
1
vote
4
replies
1.1k
views
Filtering qscore on dorado
dorado
filtering
QC
nanopore
Guppy
14 days ago by
eebloom
▴ 80
1
vote
10
replies
1.1k
views
Troubleshooting RNA-seq data with DNA contamination
RNA-seq
DESeq2
DNA-contamination
22 days ago by
DKA
▴ 40
3
votes
7
replies
1.0k
views
Can I use batch effect correction "by parts"?
ComBat
RNA-Seq
batch-effect
updated 29 days ago by
Ram
43k • written 4.4 years ago by
n,n
▴ 360
2
votes
2
replies
1.0k
views
Batch correct batch 2 while leaving batch 1 unchanged.
limma
machine-learning
batch-effect
updated 28 days ago by
Ram
43k • written 3.8 years ago by
i.sudbery
19k
2
votes
11
replies
999
views
Questions about a bug when transferring cram file to bam file
sequence
samtools
bcftools
updated 18 days ago by
jkbonfield
★ 1.2k • written 29 days ago by
me
• 0
2
votes
3
replies
995
views
Method to detect genome doubling
CNV
genome doubling
updated 24 days ago by
LauferVA
4.2k • written 4.5 years ago by
CY
▴ 750
2
votes
5
replies
954
views
Retrieval of Active site information programmatically
Catalytic
Python
Active
PDB
site
Site
updated 17 days ago by
Wayne
★ 2.0k • written 2.1 years ago by
arinjoy
• 0
1
vote
8
replies
945
views
Adding CB tag to bam file
samtools
bam
updated 22 days ago by
Pierre Lindenbaum
161k • written 28 days ago by
Maria
• 0
2
votes
7
replies
942
views
Removing duplicates
duplicates
ONT
minimap2
updated 28 days ago by
noodle
▴ 580 • written 29 days ago by
quentinperriere
• 0
3
votes
9
replies
941
views
How can I retrieve wheat lysine non-acetylated sequences from the UniProt database?
UniProt
updated 28 days ago by
Elisabeth Gasteiger
★ 2.4k • written 29 days ago by
Jacky
• 0
7
votes
16
replies
939
views
How many reads for WGS Sequencing?
WGS
Bacterial-Genomics
18 days ago by
Ruqaiya
• 0
2
votes
9
replies
938
views
TCGA2STAT Error: Firehose connection
FIREHOSE
TCGA
updated 23 days ago by
LauferVA
4.2k • written 7 months ago by
Gnana
• 0
13
votes
14
replies
907
views
High Malat-1 expression in single cell data
single-cell
updated 9 days ago by
t.montserrat.ayuso
▴ 40 • written 17 days ago by
carolofharvest
▴ 40
1
vote
10
replies
888
views
error to run rnammer
phylogenomics
rRNA_extraction
rnammer
updated 11 days ago by
antonio.spl
• 0 • written 4 months ago by
microorganism_001
▴ 30
4
votes
11
replies
881
views
Redirection of Duplicate PMIDs
pubmed
pmid
updated 23 days ago by
LauferVA
4.2k • written 24 days ago by
dominickd
• 0
0
votes
2
replies
862
views
AGeNT LocatIt
AGeNT
LocatIt
WES
UMI
duplicates
updated 22 days ago by
barslmn
★ 2.1k • written 2.8 years ago by
jhy
▴ 10
2
votes
3
replies
844
views
Issues with Mixture file when using CIBERSORTx
Deconvolution
CIBERSORTx
updated 12 days ago by
vjanve
• 0 • written 7 months ago by
mateomejias
• 0
0
votes
1
reply
842
views
How to compare differentially expressed genes among different affymatrix dataset
microarray
batch-effect
R
updated 29 days ago by
Ram
43k • written 4.8 years ago by
Calangoa
▴ 30
0
votes
1
reply
835
views
Bulk RNAseq MACS Sort Quality Contamination
EdgeR
Batch-effect
RNA-Seq
updated 28 days ago by
Ram
43k • written 3.7 years ago by
jordan15
• 0
1
vote
5
replies
805
views
RNA seq differential expression analysis
RNA-seq
normalization
updated 27 days ago by
BioinfGuru
★ 1.7k • written 29 days ago by
rrehimi
• 0
4
votes
6
replies
802
views
7 follow
Heatmap and rna-seq
RNA-Seq
Heatmap
updated 20 days ago by
dsull
★ 6.0k • written 24 days ago by
qudrat.nii
▴ 10
0
votes
1
reply
801
views
cnetplot category names are too long
clusterprofiler
RNA-Seq
enrichplot
cnetplot
updated 14 days ago by
Ram
43k • written 2.7 years ago by
carov
• 0
1
vote
3
replies
793
views
About runing Pilon on individual chromosomes when polish draft genome assembly
Pilon
chromosome
polish
genome
draft
updated 15 hours ago by
sansan_96
▴ 90 • written 2.7 years ago by
boymin2020
▴ 80
2
votes
5
replies
785
views
what's the genomic location and name of gene responsible for orange and black patches in calico cats
genomes
updated 26 days ago by
Jesse
▴ 770 • written 27 days ago by
Ann
★ 2.4k
1
vote
5
replies
784
views
Converting IGV to Figure using Illustrator (or other tools)
Illustrator
IGV
written 6 months ago by
Daniel
▴ 30
0
votes
1
reply
782
views
Can I run cellassign on samples independently if there is batch effect present?
RNA-Seq
R
cellassign
batch-effect
updated 18 days ago by
Francesco
▴ 10 • written 3.3 years ago by
gt
▴ 30
1
vote
4
replies
769
views
What happened to Tombo Re-squiggle
Tombo
resquiggle
ONT
updated 28 days ago by
Ram
43k • written 4 months ago by
turcoa1
• 0
0
votes
3
replies
766
views
Why cd-hit-est not work when sequence identity threshold<0.95?
genome
cluster
sequence
updated 17 days ago by
weidonglu
• 0 • written 21 months ago by
JZX
• 0
4
votes
8
replies
763
views
Create a new bed file with all pairwise combinations between two other bed files, based on bp distance
SNPs
BED
eqtl
bedtools
updated 20 days ago by
Alex Reynolds
35k • written 21 days ago by
J
▴ 10
10
votes
14
replies
762
views
6 follow
Bacterial plasmid analysis
bacteria
plasmid
wgs
hybridassembly
sequencing
updated 9 days ago by
GenoMax
142k • written 15 days ago by
nicole.kavanagh
• 0
5
votes
3
replies
758
views
Illumina reads preprocessing best practice for snp calling applications
Illumina
snp
updated 27 days ago by
Enrique
• 0 • written 10 months ago by
Denis
▴ 310
3
votes
6
replies
752
views
Ciriquant not configuring hisat2 indexed files
ciriquant
25 days ago by
Atul K.
• 0
3
votes
3
replies
751
views
KissDE and batch effect
kissDE
kissplice
24 days ago by
david.b.rombaut
▴ 10
8
votes
8
replies
750
views
PCA plot (Suggestions Needed)
DESeq2
PCAplot
updated 22 days ago by
swbarnes2
14k • written 23 days ago by
Aaliya
▴ 10
0
votes
2
replies
745
views
homer not configured properly
Homer
makeTagDirectory
updated 14 days ago by
clairechung112
• 0 • written 24 months ago by
amahdi779
• 0
3
votes
4
replies
744
views
Mapping cDNA sequence of a single gene to a genome not hosted at UCSC server (without Blat)
mapping
24 days ago by
rahu
• 0
0
votes
0
replies
741
views
Creating a stable batch-corrected scRNA-Seq data with multiple datasets and multiple integrations
RNA-Seq
scRNA-Seq
batch-effect
updated 28 days ago by
Ram
43k • written 3.5 years ago by
hkarakurt
▴ 180
1
vote
6
replies
725
views
anRichment is missing
WGCNA
anRichment
updated 10 days ago by
GenoMax
142k • written 6 months ago by
michael.flower.14
▴ 180
5
votes
4
replies
718
views
DEG analysis of RNA-seq data across multiple tissues and two conditions
RNA-seq
EdgeR
DEGs
DESeq2
28 days ago by
BioinfGuru
★ 1.7k
2
votes
4
replies
719
views
Count all variants from vcf file
variants
vcf
Count
updated 10 days ago by
Pierre Lindenbaum
161k • written 21 months ago by
t.ali
• 0
5
votes
4
replies
711
views
How to compare the quality of assemblies
nextdenovo
assembly
hifiasm
pacbio
23 days ago by
kirillkirilenko
▴ 40
0
votes
11
replies
710
views
How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq libraries?
STARSolo
scRNA-seq
STAR
snRNA-seq
MGI
21 days ago by
atowns21
• 0
0
votes
1
reply
703
views
after selecting specific GO terms to plot, cneplot is not showing any color for genes, GO terms and only showing lines without nodes.
cneplot
updated 16 days ago by
Ram
43k • written 16 days ago by
Dr Huma Naz
• 0
0
votes
3
replies
696
views
Pluritest for pluripotency broken
pluripotent
pluritest
cells
stem
updated 8 days ago by
DGTool
▴ 20 • written 21 months ago by
yassine
• 0
2
votes
9
replies
694
views
Filtering Multi-sample VCF file for all except one Genotype
variant
SNP
VCF
updated 2 days ago by
Pierre Lindenbaum
161k • written 9 days ago by
schmince
• 0
3
votes
8
replies
678
views
Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA2 - where to go from here?
nf-core
16S
amplicon
dada2
ampliseq
updated 10 days ago by
Chris Dean
▴ 410 • written 14 days ago by
sovrappensiero
▴ 100
801 results • Page
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