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121,934 results • Page
114 of 2439
Sort: Rank
Rank
Views
Votes
Replies
1
vote
1
reply
416
views
student
epitranscriptomics
updated 16 months ago by
ATpoint
89k • written 16 months ago by
useriwa
• 0
0
votes
3
replies
774
views
trying to count a pattern in my fastq file using bbduk
java
bbduk
bbmap
fastq
updated 16 months ago by
GenoMax
154k • written 16 months ago by
Assa Yeroslaviz
★ 1.9k
2
votes
2
replies
1.1k
views
Is therer any suggestions on mapping rate of WGBS data?
mapping
read
alignment
WGBS
16 months ago by
Zeng Jingyu
▴ 80
1
vote
2
replies
969
views
News:
We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
cell-clustering
Spatial-transcriptomics
updated 16 months ago by
Weiwen
• 0 • written 16 months ago by
MICOS
▴ 10
0
votes
4
replies
1.1k
views
Correlation Analysis
statistics
methylation
NGS
expression
16 months ago by
Researcher
▴ 30
1
vote
2
replies
594
views
Repeated testing/data mining in RNA Seq
repeated
RNA-Seq
mining
testing
data
16 months ago by
robert.flynn.21
▴ 10
1
vote
1
reply
1.6k
views
Tool:
Converting Nebula Genomics Data to 23andMe Format
23andMe
Nebula
updated 16 months ago by
Michael
56k • written 16 months ago by
Guillermo
• 0
1
vote
5
replies
1.6k
views
Comparative Analysis of Algorithms for Implementing the FM-Index: Correctness, Complexity, and Use Cases
fmindex
bwt
updated 16 months ago by
Michael
56k • written 16 months ago by
qwertyuiop26
• 0
2
votes
1
reply
722
views
What is the proper way to identify the cell types of scRNAseq cluster?
scRNAseq
updated 16 months ago by
ATpoint
89k • written 16 months ago by
MAPK2
▴ 50
0
votes
2
replies
1.3k
views
Job:
Bioinformatics Analyst - Laboratory Medicine and Pathology
job
updated 16 months ago by
Xiaofen
• 0 • written 16 months ago by
toddknutson
▴ 60
0
votes
1
reply
635
views
Seeking Guidance on Identifying Mutations in DARs from ATAC Data in Cancer Genomes
Genomics
Cancer-Research
ATAC-seq
updated 16 months ago by
Ram
45k • written 16 months ago by
David
• 0
2
votes
4
replies
1.2k
views
Where to get the following bed file?
WES
bed
reference
file
updated 16 months ago by
GenoMax
154k • written 16 months ago by
wyuan37
• 0
0
votes
0
replies
360
views
Get Paired TCRa/b from MIXCR
python
r
mixcr
tcr_seq
16 months ago by
Scott McKay
▴ 30
0
votes
0
replies
389
views
Cellphonedb results
cpdb
visulization
cellphonedb
16 months ago by
piotto
▴ 20
1
vote
0
replies
606
views
Job:
Post-doctoral Position in Alzheimer’s Disease Genetics, ‘Omics, and Biomarkers
Genomics
Alzheimer
multiomics
neuroimaging
16 months ago by
belloy
▴ 10
1
vote
3
replies
1.4k
views
How to compute TPM normalized values for TCGA miRNA data?
TCGA
normalization
TPM
miRNA
updated 16 months ago by
swbarnes2
15k • written 16 months ago by
Ngrin
• 0
1
vote
6
replies
1.8k
views
anRichment is missing
WGCNA
anRichment
updated 16 months ago by
GenoMax
154k • written 22 months ago by
michael.flower.14
▴ 210
1
vote
1
reply
603
views
Gene ontology and homologs
gene-ontology
updated 16 months ago by
geneontologyhelp
▴ 470 • written 17 months ago by
beshka194
• 0
1
vote
2
replies
763
views
error in R code: Error in fit_avlr(...), : wn incorrectly formatted
R
updated 16 months ago by
zx8754
12k • written 16 months ago by
snajafy
• 0
0
votes
0
replies
396
views
Cox Model with interaction item interpretation
Cox
16 months ago by
Nona
▴ 90
0
votes
0
replies
426
views
how to downlad slices of CRAM fro ICGC ARGO
icgc
samtools
cram
16 months ago by
Javier
• 0
1
vote
7
replies
1.5k
views
Question regarding WGCNA
WGCNA
Network-construction
16 months ago by
deepak
• 0
2
votes
0
replies
10k
views
Herald:
The Biostar Herald for Monday, May 06, 2024
herald
16 months ago by
Biostar
3.6k
0
votes
1
reply
1.1k
views
16S rRNA microbiome differential abundance analysis with DESeq2 finds same microbial Genus in both groups.
microbiome
16S
DESeq2
updated 16 months ago by
andres.firrincieli
3.9k • written 16 months ago by
Antonio
• 0
0
votes
0
replies
614
views
Error while loading model of Spatial data deconvolution using cell2location
Python
cell2location
updated 16 months ago by
Ram
45k • written 16 months ago by
sidrah.maryam
▴ 70
0
votes
0
replies
384
views
Normalizing AMR gene count data
abundance
RGI
updated 16 months ago by
Ram
45k • written 16 months ago by
arshad1292
▴ 110
1
vote
1
reply
716
views
Help with VG Toolkit: VCF Output is Empty
vg
updated 16 months ago by
Jordan M Eizenga
▴ 760 • written 16 months ago by
sarumonsus
▴ 10
0
votes
0
replies
466
views
How to implement an IGV to streamlit app?
python
streamlit
igv
16 months ago by
avigail.shnaider
• 0
1
vote
5
replies
1.2k
views
install.packages("imudata") - package ‘imudata’ is not available for this version of R
r
updated 16 months ago by
Ram
45k • written 16 months ago by
snajafy
• 0
0
votes
3
replies
1.2k
views
Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so the model cannot be fit as specified.
DESeq2
16 months ago by
mropri
▴ 170
2
votes
2
replies
1.2k
views
STRING-DB API can't find my protein but I can find it when I go to the STRING-DB website directly
STRING-DB
protein
STRING-DB-API
16 months ago by
brandon
▴ 10
0
votes
0
replies
373
views
Mitogenomes gap closure and making circular genome
gapclosure
Mitogenomes
validation
circulargenome
17 months ago by
KHURRAM SHAHZAD
• 0
3
votes
6
replies
4.9k
views
install package: package ‘gmwm’ is not available for this version of R
r
updated 16 months ago by
Pine
▴ 20 • written 17 months ago by
snajafy
• 0
0
votes
0
replies
402
views
Looking for phytopathogenic, Nitrogen-Fixing, and Growth-Promoting databases for Metagenomic Analysis
Bacteria
Metagenomics
Database
17 months ago by
Christopher
▴ 10
4
votes
1
reply
893
views
LD-prune variants while maintaining a list of SNPs
snp
vcf
plink
filtering
independent
updated 16 months ago by
zx8754
12k • written 17 months ago by
Jautis
▴ 580
7
votes
2
replies
1.2k
views
Association study using SNP data
Association
Allele
Parentage
SNP
17 months ago by
drajangirija
▴ 10
0
votes
0
replies
416
views
News:
Online course: Bioinformatic analysis of transposable elements
GenomeAssembly
Transcriptomics
TransposableElements
ManualCuration
17 months ago by
Physalia-courses
★ 2.6k
2
votes
3
replies
1.6k
views
Problem with Seurat package in PercentageFeatureSet function
cell
single
updated 16 months ago by
bk11
★ 3.1k • written 17 months ago by
Yoosef
▴ 60
3
votes
4
replies
1.3k
views
Design matrix Differential expression analysis
RNA-seq
Differential-expression
updated 16 months ago by
Gordon Smyth
★ 8.3k • written 17 months ago by
SHN
▴ 40
4
votes
2
replies
874
views
GRCh38.gmap file
gnomix
gmap
17 months ago by
lorena9132
▴ 10
3
votes
3
replies
2.8k
views
Issues with Mixture file when using CIBERSORTx
Deconvolution
CIBERSORTx
updated 17 months ago by
vjanve
• 0 • written 24 months ago by
mateomejias
• 0
0
votes
1
reply
656
views
creating batch colum for batch correction
batch-correction
combat
16 months ago by
Expert
▴ 10
1
vote
4
replies
1.1k
views
Segmentation error while using a tool
smalt
updated 17 months ago by
Mensur Dlakic
★ 30k • written 17 months ago by
RT
• 0
0
votes
1
reply
772
views
Help with DGEList function
DGEList
R
updated 16 months ago by
marco.barr
▴ 180 • written 17 months ago by
Natali
• 0
0
votes
0
replies
415
views
Homer motif analysis
Homer
17 months ago by
daffodil
▴ 10
1
vote
2
replies
1.8k
views
News:
The GDC Legacy Archive is retiring soon.
genomic-data-commons
tcga
gdc
17 months ago by
Zhenyu Zhang
★ 1.3k
3
votes
2
replies
2.5k
views
Force PLINK2 to neglect chrX as the sex chromosome
PLINK2
16 months ago by
8armed
▴ 20
0
votes
5
replies
2.0k
views
Easy way to find out which allele is minor allele from bed file?
plink
updated 17 months ago by
chrchang523
11k • written 17 months ago by
curious
▴ 890
3
votes
1
reply
1.1k
views
visualize GSEA
barplot
RNA-seq
GSEA
enrichment
updated 17 months ago by
Ram
45k • written 17 months ago by
Rob
▴ 180
0
votes
2
replies
964
views
fastq screen aligner no specified.
BWA
Bowtie2
FastqScreen
updated 16 months ago by
GenoMax
154k • written 17 months ago by
Ximena
• 0
121,934 results • Page
114 of 2439
Recent Votes
What happened to biomart.org
Answer: allele frequency in VCF
Understanding terms, specifically relating to GT:PL in a VCF file
Comment: Looking to learn practical bioinformatics
Answer: WGCNA package in R: dendogram plot error
Answer: Does this adapter content from fastqc to warrant trimming prior to alignment?
Answer: Does this adapter content from fastqc to warrant trimming prior to alignment?
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Jeremy Leipzig
23k
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nuorain
▴ 40
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7.1k
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m90
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Recent Replies
Answer: Linear regression vs DESeq2 models for DEG analysis
by
swbarnes2
15k
DE genes in bulk RNASeq is what DESeq2 was made for, so why wouldn't you use it? RPKM is not an appropriate normalization method here. M…
Comment: What happened to biomart.org
by
Jeremy Leipzig
23k
same with geuvadis.org
Comment: real time PCR data analysis
by
Gordon Smyth
★ 8.3k
Are you doing qPCR for one gene or for several genes?
Comment: protein interaction prediction
by
Fatemeh
▴ 50
Thanks very much for your help. I need to try it.
Comment: real time PCR data analysis
by
Fatemeh
▴ 50
Thanks a lot for the link. The problem is that with this repeated measures, if you put the data from different donors in different rows, fo…
Answer: What happened to biomart.org
by
GenoMax
154k
Looks like EBI let the domain registration expire. The domain was picked up by someone else and turned into the site OP mentions. There use…
Comment: Hifiasm is getting killed while trying to assemble a genome
by
GenoMax
154k
> I want to reconstruct the assembly using the pacbio reads only. Is there a paper associated with this data? If the original publication/…
Comment: real time PCR data analysis
by
ATpoint
89k
I think the keyword to go after here is repeated measures https://www.graphpad.com/guides/prism/latest/statistics/repeated_measures.htm
Answer: What happened to biomart.org
by
ATpoint
89k
Maybe I am missing sth because I've never used the website but only the API and R interface, but I think the website has always been https:…
Comment: protein interaction prediction
by
Fatemeh
▴ 50
It is most probably binding to a protein. Its function is somehow known though, which is good . Thanks very much for the link. I will have …
Comment: Looking to learn practical bioinformatics
by
Upesh
▴ 20
ATpoint, you are absolutely bang on. In fact, my intention is not to switch careers but to connect with this field and build tools/systems …
Comment: Hifiasm is getting killed while trying to assemble a genome
by
pranavdatar01
• 0
I am trying to reproduce the assembly from the raw pacbio reads. I want to reconstruct the assembly using the pacbio reads only.
Comment: Does this adapter content from fastqc to warrant trimming prior to alignment?
by
ATpoint
89k
I would trim it. Two percent is not much but with WGS, say you have 400mio reads per sample or so, it's still millions of reads that theore…
Comment: Looking to learn practical bioinformatics
by
ATpoint
89k
> How do I connect the dots to a grand vision of drug discovery, DNA analysis, disease etc. Despite that computational-driven data analys…
Comment: Looking to learn practical bioinformatics
by
Upesh
▴ 20
Thank you, genomax, for the recommendations! Very helpful!
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