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121,934 results • Page
113 of 2439
Sort: Rank
Rank
Views
Votes
Replies
0
votes
5
replies
1.2k
views
How to convert normalized BigWig file to count matrix?
count-matrix
BigWig
16 months ago by
feather-W
• 0
0
votes
3
replies
987
views
bcftools - reducing to "sites-only"?
sites-only
bcftools
updated 16 months ago by
Pierre Lindenbaum
166k • written 16 months ago by
Matthew
▴ 10
3
votes
4
replies
3.7k
views
Have you ever obtained user guide of ExomeCNV?
CNV
updated 5.8 years ago by
lffu_0032
▴ 90 • written 6.6 years ago by
oghzzang
▴ 50
0
votes
1
reply
519
views
input file for alternative splicing in rmats in linux
rmats
updated 16 months ago by
Ram
45k • written 16 months ago by
Lambodarswain316
▴ 10
4
votes
2
replies
974
views
Server or aws cloud- which one is better for gatk pipeline
aws
server
calling
gatk
cloud
updated 16 months ago by
Michael
56k • written 16 months ago by
ashaneev07
▴ 50
1
vote
2
replies
1.3k
views
ComBat_Seq stuck adjusting the data
Batch-Effect
RNAseq
ComBat-Seq
updated 13 months ago by
theresia.celine
▴ 10 • written 21 months ago by
NorbertK
▴ 10
4
votes
3
replies
5.4k
views
How to solve the error 'ERROR::MATE_NOT_FOUND:Found xxx unpaired mates' when run SamToFastq
samtofasq
picard
validatesamfile
updated 16 months ago by
Pierre Lindenbaum
166k • written 16 months ago by
Lila M
★ 1.3k
2
votes
3
replies
1.7k
views
Nextflow: how to get the process work dir, within the process
nextflow
updated 16 months ago by
Pierre Lindenbaum
166k • written 16 months ago by
ScottDansk
▴ 10
1
vote
0
replies
609
views
What is Deepvariant default filtering values ?
vcf
calling
filter
variant
deepvariant
16 months ago by
Shae
▴ 10
1
vote
1
reply
734
views
Enhanced Volcano-Cut off
foldchange
enhancedvolcano
updated 16 months ago by
marco.barr
▴ 180 • written 16 months ago by
odi
▴ 10
0
votes
6
replies
3.2k
views
Copy number Variation analysis using conumee
R
software error
sequencing
genome
updated 16 months ago by
GenoMax
154k • written 4.6 years ago by
gs000095
▴ 10
1
vote
2
replies
1.8k
views
Conda severely broken after attempting mamba install
biopython
conda
mamba
pycosat
updated 11 months ago by
Quentin
• 0 • written 16 months ago by
kacollier
▴ 30
2
votes
3
replies
3.5k
views
Seurat CellCycleScoring – confused about the proper order of operations when using SCTransform
CellCycleScoring
SCTransform
Seurat
updated 13 months ago by
Kimaya
• 0 • written 3.6 years ago by
GPM
▴ 20
0
votes
0
replies
377
views
Summary Statistics SNPs not found in Target data
SNP
plink
PRS
updated 16 months ago by
Ram
45k • written 16 months ago by
curious_butterfly
• 0
1
vote
4
replies
1.7k
views
Contig assembly task, errors
dna
genetics
contig
assembly
updated 16 months ago by
Ram
45k • written 16 months ago by
samRayne
▴ 20
0
votes
0
replies
599
views
Annotate VCF via VEP for gnomAD annotation considering FILTER column
vep
vcf
gnomad
16 months ago by
asalimih
▴ 60
0
votes
9
replies
2.2k
views
kinannote software installation problems
kinannote
updated 16 months ago by
Emanoelle
• 0 • written 7.1 years ago by
Elizabeth
▴ 40
0
votes
2
replies
1.3k
views
Obtaining Infinium Methylation450K manifest for hg38
TCGA
hg38
methylation
Illumina
updated 16 months ago by
Zhenyu Zhang
★ 1.3k • written 16 months ago by
elisheva
▴ 120
0
votes
0
replies
432
views
Pathway analysis of Bacteria from denovo genome assembly
KEGG-KASS
WGS
Pathway
denovo
updated 16 months ago by
Ram
45k • written 16 months ago by
mathavanbioinfo
▴ 80
1
vote
1
reply
2.6k
views
Seurat V5 integration
Seurat
integration
updated 16 months ago by
Ram
45k • written 17 months ago by
starswillfade
▴ 10
0
votes
2
replies
858
views
Error in plotting PCA plot in seurat
PCA
single-cell
seurat
scRNA
RNA
updated 16 months ago by
Ram
45k • written 16 months ago by
Sumeet
• 0
0
votes
0
replies
473
views
News:
Online course: Introduction to Deep Learning
Python
Deep-Learning
Convolutional-Neural-Network
Machine-Learning
updated 16 months ago by
Ram
45k • written 16 months ago by
Physalia-courses
★ 2.6k
4
votes
5
replies
4.6k
views
How to compare compare two Sam files to check mapping
alignment
updated 16 months ago by
DavidStreid
▴ 110 • written 7.8 years ago by
madhu.9124
▴ 60
0
votes
2
replies
752
views
How/where can I get fungal mitogenome data for analysis?
fungal
mitogenome
updated 16 months ago by
GenoMax
154k • written 16 months ago by
madders73
▴ 10
4
votes
2
replies
815
views
How can I analyze normalized expression data?
DEseq2
RNA-seq
16 months ago by
mnx0723
• 0
3
votes
4
replies
5.6k
views
FarmCPU - how to explain the reported 'effect'?
gwas
updated 16 months ago by
chloek88
• 0 • written 6.9 years ago by
Philipp Bayer
8.9k
5
votes
7
replies
1.7k
views
RNA seq analysis
DESeq
RNA-seq
16 months ago by
Jacek
▴ 20
15
votes
3
replies
1.2k
views
TFs and Gene databases
Transcription-factor
Target
Regulatory-Networks
updated 16 months ago by
b.contreras.moreira
▴ 490 • written 16 months ago by
ijarne
▴ 20
0
votes
0
replies
286
views
Chance for trained without experience
bio
updated 16 months ago by
ATpoint
89k • written 16 months ago by
shehab
• 0
3
votes
3
replies
2.7k
views
How do I change the title font size in ViolinPlot (Seurat)
Seurat
Violin-Plot
ggplot2
patchwork
updated 3 months ago by
e.r.zakiev
▴ 260 • written 16 months ago by
Assa Yeroslaviz
★ 1.9k
0
votes
2
replies
680
views
Phasing a mixture of two individuals' DNA with long reads
long-reads
phasing
16 months ago by
njornet
▴ 20
0
votes
2
replies
703
views
Exploring Diet Effects in Single-Cell RNA Sequencing
batch_effect
scRNA
seurat
integration
updated 16 months ago by
Adam
▴ 30 • written 16 months ago by
Darya
• 0
0
votes
5
replies
1.5k
views
Percentage coverage of reference genome by de novo genome
SAMtools
BWA
alignment
ddRAD
updated 16 months ago by
Joe
22k • written 16 months ago by
Lemonhope
▴ 10
0
votes
5
replies
1.0k
views
A question about reference genome for creating the consensus sequence
fasta
fa
cram
genome
16 months ago by
me
• 0
0
votes
0
replies
371
views
Blog:
Introduction to The Complete Sequence of a Human Genome
biotech
16 months ago by
usa.cd.genomics
• 0
0
votes
0
replies
851
views
Blog:
Overview of Nanopore Sequencing
biotech
16 months ago by
usa.cd.genomics
• 0
0
votes
0
replies
332
views
meffil.snp.concordance
meffil
methylation
snp_concordance
16 months ago by
kyj222637
▴ 10
0
votes
1
reply
713
views
PseudobulkExpression.Seurat error
Seurat
pseudo-bulk
updated 16 months ago by
Bastien Hervé
6.5k • written 16 months ago by
sooni
▴ 20
1
vote
5
replies
1.2k
views
HCL database download
HCL
updated 16 months ago by
Ram
45k • written 17 months ago by
sooni
▴ 20
0
votes
1
reply
710
views
barcode of TCR-sequencing
barcode
updated 16 months ago by
mizraelson
▴ 60 • written 17 months ago by
yueli7
▴ 250
1
vote
3
replies
901
views
STAR aligner error
RNA-seq
STAR
slurm
updated 16 months ago by
Ram
45k • written 16 months ago by
M.
▴ 40
0
votes
2
replies
676
views
Correlating Bulk Differential Expression with quantitative
Differential-Expression
DESeq2
16 months ago by
Nicholas
• 0
1
vote
4
replies
2.5k
views
Understanding STAR output (Aligned.out.sam file)
STAR
paired-end
read
16 months ago by
heelpPlease
• 0
0
votes
9
replies
2.5k
views
Applying the metacell2 algorithm using python
python
single-cell
scanpy
metacell2
updated 16 months ago by
Wayne
★ 2.1k • written 16 months ago by
AlexStar
▴ 200
0
votes
0
replies
405
views
News:
Online course. -Time series analysis and Forecasting in R
Time-Series
Forecasting
R
Stastics
16 months ago by
Physalia-courses
★ 2.6k
0
votes
2
replies
1.5k
views
HLA-HD tool for genomic imputation
genomics
imputation
bash
updated 16 months ago by
Javier
• 0 • written 20 months ago by
fra.r.silvestro
▴ 10
0
votes
1
reply
1.1k
views
ERROR: Duplicate entry "..." in sam header; samtools view: failed to add PG line to the header
sort.
SAMtools.
BAM.
SAM.
updated 16 months ago by
GenoMax
154k • written 16 months ago by
Sony
▴ 20
5
votes
5
replies
1.4k
views
Error in dimnames(x) <- dn : length of 'dimnames' [2] not equal to array extent
EGSEA
16 months ago by
Chris
▴ 360
0
votes
2
replies
884
views
Differentail gene expression results
differential
expression
gene
rna-seq
Deseq2
updated 16 months ago by
swbarnes2
15k • written 16 months ago by
ahmad.sajad4541
• 0
5
votes
12
replies
2.9k
views
UMI-Tools knee-method has great influence on the results of white list
single-cell
whitelist
UMI
RNA
UMI-Tools
updated 16 months ago by
i.sudbery
22k • written 16 months ago by
Assa Yeroslaviz
★ 1.9k
121,934 results • Page
113 of 2439
Recent Votes
What happened to biomart.org
Answer: allele frequency in VCF
Understanding terms, specifically relating to GT:PL in a VCF file
Comment: Looking to learn practical bioinformatics
Answer: WGCNA package in R: dendogram plot error
Answer: Does this adapter content from fastqc to warrant trimming prior to alignment?
Answer: Does this adapter content from fastqc to warrant trimming prior to alignment?
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nuorain
▴ 40
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7.1k
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Recent Replies
Comment: What happened to biomart.org
by
Jeremy Leipzig
23k
same with geuvadis.org
Comment: real time PCR data analysis
by
Gordon Smyth
★ 8.3k
Are you doing qPCR for one gene or for several genes?
Comment: protein interaction prediction
by
Fatemeh
▴ 50
Thanks very much for your help. I need to try it.
Comment: real time PCR data analysis
by
Fatemeh
▴ 50
Thanks a lot for the link. The problem is that with this repeated measures, if you put the data from different donors in different rows, fo…
Answer: What happened to biomart.org
by
GenoMax
154k
Looks like EBI let the domain registration expire. The domain was picked up by someone else and turned into the site OP mentions. There use…
Comment: Hifiasm is getting killed while trying to assemble a genome
by
GenoMax
154k
> I want to reconstruct the assembly using the pacbio reads only. Is there a paper associated with this data? If the original publication/…
Comment: real time PCR data analysis
by
ATpoint
89k
I think the keyword to go after here is repeated measures https://www.graphpad.com/guides/prism/latest/statistics/repeated_measures.htm
Answer: What happened to biomart.org
by
ATpoint
89k
Maybe I am missing sth because I've never used the website but only the API and R interface, but I think the website has always been https:…
Comment: protein interaction prediction
by
Fatemeh
▴ 50
It is most probably binding to a protein. Its function is somehow known though, which is good . Thanks very much for the link. I will have …
Comment: Looking to learn practical bioinformatics
by
Upesh
▴ 20
ATpoint, you are absolutely bang on. In fact, my intention is not to switch careers but to connect with this field and build tools/systems …
Comment: Hifiasm is getting killed while trying to assemble a genome
by
pranavdatar01
• 0
I am trying to reproduce the assembly from the raw pacbio reads. I want to reconstruct the assembly using the pacbio reads only.
Comment: Does this adapter content from fastqc to warrant trimming prior to alignment?
by
ATpoint
89k
I would trim it. Two percent is not much but with WGS, say you have 400mio reads per sample or so, it's still millions of reads that theore…
Comment: Looking to learn practical bioinformatics
by
ATpoint
89k
> How do I connect the dots to a grand vision of drug discovery, DNA analysis, disease etc. Despite that computational-driven data analys…
Comment: Looking to learn practical bioinformatics
by
Upesh
▴ 20
Thank you, genomax, for the recommendations! Very helpful!
Comment: Learning Biology/Bioinformatic Basics
by
Upesh
▴ 20
For anyone landing on this page, the updated link is: [https://www.langmead-lab.org/teaching.html][1] [1]: https://www.langmead-lab.org/…
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