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121,937 results • Page
131 of 2439
Sort: Rank
Rank
Views
Votes
Replies
2
votes
6
replies
2.9k
views
Hybrid assembly Pacbio- Nanopore
long-reads
hybric
assembly
genome
short-reads
18 months ago by
Lissa Cruz Saavedra
• 0
0
votes
0
replies
361
views
In scRNA, How should I set QC standards?
scRNA
QC
18 months ago by
mnx0723
• 0
0
votes
2
replies
936
views
Error occurs when migrate-n software performs "make mpis"
migrate-n
18 months ago by
lingxue
• 0
0
votes
0
replies
419
views
How to check if a few pathways have relationship?
MSigdb
REACTOME
KEGG
18 months ago by
Chris
▴ 360
2
votes
10
replies
2.3k
views
Only one read per run - Trying to use CellRangerv7
Fastq
CellRanger
updated 18 months ago by
Ram
45k • written 19 months ago by
Sky
▴ 10
3
votes
2
replies
808
views
FDR and Bonferroni
FDR
Bonferroni
updated 18 months ago by
noodle
▴ 650 • written 18 months ago by
song
• 0
0
votes
1
reply
810
views
Which fasta files are assembled transcripts IDBA_tran assembler ?
RNA-Seq
Assembly
updated 18 months ago by
weidonglu
• 0 • written 5.3 years ago by
sunnykevin97
▴ 1000
0
votes
0
replies
333
views
doing some ontology enrichment analysis
GO
18 months ago by
aleksk779
• 0
2
votes
1
reply
796
views
Choosing an FC Threshold
statistics
rna-seq
updated 18 months ago by
Gordon Smyth
★ 8.3k • written 18 months ago by
Netanel
• 0
0
votes
1
reply
4.1k
views
Converting AutoDock-Vina PDBQTs to PDB files
Docking
AutoDock
Vina
PDBQT
PDB
updated 18 months ago by
Mensur Dlakic
★ 30k • written 18 months ago by
Ricard
• 0
0
votes
2
replies
508
views
novel and know mir156 and mir172
a
updated 18 months ago by
gayachit
▴ 200 • written 18 months ago by
Fadmo
• 0
0
votes
2
replies
935
views
Update R in Posit Workbench
R
Posit
18 months ago by
Nitin
• 0
12
votes
6
replies
2.1k
views
Pangenome of plant
pangenome
plant
17 months ago by
analyst
▴ 70
1
vote
2
replies
827
views
vg call is time consuming
vg
18 months ago by
Maxine
▴ 50
4
votes
14
replies
8.9k
views
8 follow
Installation: Tax4Fun2 package are not found and github repository is not maintained anymore
Tax4Fun2
updated 18 months ago by
Ram
45k • written 3.3 years ago by
Elsa
▴ 20
0
votes
8
replies
2.1k
views
STAR aligner options
STAR
18 months ago by
theophile
• 0
2
votes
3
replies
1.1k
views
Website or tool to obtain a list of genes that participate in a specific process?
genomics
updated 18 months ago by
NancyTLi
▴ 20 • written 21 months ago by
Hamtaro
▴ 60
0
votes
2
replies
1.1k
views
How to obtain Node/ Edge information from a Reactome Pathway
R
API
pathways
reactome
databases
updated 18 months ago by
GenoMax
154k • written 19 months ago by
K.patel5
▴ 150
1
vote
3
replies
1.2k
views
Why counting by diffbind and featurecounts differ?
featurecounts
diffbind
updated 12 months ago by
Ian
6.1k • written 18 months ago by
Ankit
▴ 520
0
votes
1
reply
528
views
Wanting to make a Venn diagram of ATACseq peak files, unsure of where to start
ATAC-seq
updated 18 months ago by
Yogi
▴ 70 • written 18 months ago by
Ronin
▴ 10
0
votes
0
replies
312
views
Association Module to traits
module-trait-relationships
WGCNA
GENIE3
DOMINO
updated 18 months ago by
Ram
45k • written 18 months ago by
r.shiasi3897
▴ 10
0
votes
0
replies
407
views
Number of pathway result from GSVA
GSVA
18 months ago by
Chris
▴ 360
0
votes
1
reply
640
views
How can I remove duplicate SNP?
plink
updated 18 months ago by
iraun
6.2k • written 18 months ago by
Zhennan
• 0
0
votes
1
reply
424
views
SNP VCF files from hybrid populations and parental populations generated by GBS in public databases
contaminations
verification
parental
check
updated 18 months ago by
Ram
45k • written 18 months ago by
Hajar
• 0
0
votes
0
replies
345
views
Creating a custom ontology for peptides
ontology
peptide
18 months ago by
Mathew
• 0
0
votes
3
replies
1.3k
views
convert cds to seurat object
R
monocle3
seurat
updated 18 months ago by
edoardofilippi1998
• 0 • written 18 months ago by
sooni
▴ 20
0
votes
0
replies
340
views
GSEA number dimension of expression dataset
GSEA
18 months ago by
edoardofilippi1998
• 0
1
vote
3
replies
1.1k
views
Limma compare between 3 conditions vs 2 conditions
Limma
updated 17 months ago by
Gordon Smyth
★ 8.3k • written 18 months ago by
Chris
▴ 360
0
votes
0
replies
368
views
single cell data integration approach
comparison
integration
pairwise
singlecell
18 months ago by
Jay
• 0
0
votes
3
replies
801
views
High number of detected genes per cell after doublet removal - scRNAseq data
scRNAseq
duoblet
18 months ago by
sarahmanderni
▴ 130
1
vote
3
replies
1.8k
views
DESeq2 and normalization
RNA-seq
normalization
DESeq2
updated 18 months ago by
dsull
★ 7.7k • written 18 months ago by
JH
▴ 10
1
vote
2
replies
754
views
Error with goodSamplesGenes()
R
WGCNA
18 months ago by
bioinfo_enthusiast
• 0
0
votes
0
replies
381
views
Variant Enrichment Analysis
Analysis
Enrichment
VEP
Variant
18 months ago by
Mojtaba
• 0
0
votes
7
replies
1.4k
views
Salmon Quantification in Alignment based-mode
Salmon
RNA-seq
TPM
updated 18 months ago by
GenoMax
154k • written 18 months ago by
Patadu94
• 0
0
votes
1
reply
474
views
dbsnp flanks information
dbsnp
updated 18 months ago by
Pierre Lindenbaum
166k • written 18 months ago by
sskimvd
• 0
0
votes
2
replies
705
views
Cell communacations analysis. I only have the proteome of one type of cell
How
to
updated 18 months ago by
QX
▴ 80 • written 18 months ago by
David Arturo
• 0
0
votes
0
replies
356
views
bulk RNA-seq: how to remove batch effect between multiple batches and labels?
combat
batch
18 months ago by
kiraqueen
• 0
2
votes
2
replies
689
views
A pipeline for prediction and annotation of obelisks
rna-seq
updated 18 months ago by
Pierre Lindenbaum
166k • written 18 months ago by
fred.s.kremer
▴ 110
0
votes
0
replies
361
views
Convert VCF file and add covariate information
VCF
PED
PLINK
18 months ago by
asmariyaz23
▴ 10
0
votes
0
replies
347
views
Merging Hi-C datasets originating from experiments using different enzymes
enzymes
Hi-C
updated 18 months ago by
Ram
45k • written 18 months ago by
hamarillo
▴ 80
0
votes
2
replies
1.5k
views
Using the Ontology Lookup Service (OLS) API
API
OLS
18 months ago by
longoka
▴ 40
7
votes
2
replies
747
views
Create a new reference genome with denovo assembly and standard reference with long read data?
PacBio
updated 18 months ago by
gconcepcion
▴ 410 • written 18 months ago by
eorr
▴ 30
2
votes
3
replies
735
views
Extracting information from my VCF file
VCF
updated 18 months ago by
bioruffo
▴ 40 • written 18 months ago by
realtreeecat
• 0
0
votes
4
replies
1.1k
views
Coverage observed in introns in the Knockdown genes but not in knockout genes
RNA-seq
STAR
IGV
18 months ago by
rohitsatyam102
▴ 940
2
votes
3
replies
2.1k
views
Should I use Dfam or a custom repetitve elements library (from PlantRep) as a repeat database; using RepeatMasker in a Linux machine?
genome
sequence
repeatmasker
blast
updated 18 months ago by
b.contreras.moreira
▴ 490 • written 18 months ago by
Vijith
▴ 100
0
votes
0
replies
438
views
How to access an image (slice) of interest in spatial analysis
spatial-transcriptomics
Seurat
Visium
updated 18 months ago by
Ram
45k • written 18 months ago by
piotto
▴ 20
0
votes
2
replies
728
views
Fpkm and log2fold change and pcr validation
fpkm
18 months ago by
mounavisirekolam
• 0
2
votes
2
replies
964
views
Location of NCBI ftp site changed?
ftp
ncbi
18 months ago by
sampsa.hyvamaki
• 0
0
votes
1
reply
709
views
MACS3 or SEACR
MACS3
SEACR
updated 18 months ago by
jared.andrews07
★ 19k • written 18 months ago by
daffodil
▴ 10
0
votes
0
replies
356
views
Visium dataset distance between spots calculations
SpatialSeq
Visium
updated 18 months ago by
GenoMax
154k • written 18 months ago by
houssi301
• 0
121,937 results • Page
131 of 2439
Recent Votes
Answer: Linear regression vs DESeq2 models for DEG analysis
A: What'S The Difference Between Cds And Orf?
A: What'S The Difference Between Cds And Orf?
A: What'S The Difference Between Cds And Orf?
A: What'S The Difference Between Cds And Orf?
Answer: Linear regression vs DESeq2 models for DEG analysis
Answer: Linear regression vs DESeq2 models for DEG analysis
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Recent Replies
Comment: Linear regression vs DESeq2 models for DEG analysis
by
swbarnes2
15k
It is not clear to me that you can meaningfully correct for 5 different batches with two samples a piece.
Comment: Does this adapter content from fastqc to warrant trimming prior to alignment?
by
GenoMax
154k
> I am not sure if there would be primer dimer sequences I should have said adapter dimers above. Correction made.
Comment: Help understanding this per base sequence content failure fastqc plot
by
lieven.sterck
15k
that 151st base added is a base to ignore (it's a kind of random addition) ... if I recall correctly it's a consequence of the technology. …
Comment: Linear regression vs DESeq2 models for DEG analysis
by
FioG
• 0
@swbarnes2 Thank you for your response! I am new to RNA seq analysis and was originally recommended to use the LM method following cqn and …
Comment: Does this adapter content from fastqc to warrant trimming prior to alignment?
by
curious
▴ 890
Thank you, the adapter sequences are specified as CTGTCTCTTATACACATCT+ATGTGTATAAGAGACA is the SampleSheet.csv file from the sequencing run.…
Comment: how to explain the sample size discrepancy in UCSC Xena
by
nuorain
▴ 40
Thank you very much.
Answer: how to explain the sample size discrepancy in UCSC Xena
by
i.sudbery
22k
Because there wasn't RNA-seq analysis performed for every sample in TCGA?
Answer: Linear regression vs DESeq2 models for DEG analysis
by
i.sudbery
22k
There are two main problems with using linear models for read-count based analyses. Firstly, linear models assume a normal distribution…
Comment: real time PCR data analysis
by
ATpoint
89k
I cannot guide on GraphPad. It's commercial software so better contact their support.
Answer: Linear regression vs DESeq2 models for DEG analysis
by
swbarnes2
15k
DE genes in bulk RNASeq is what DESeq2 was made for, so why wouldn't you use it? RPKM is not an appropriate normalization method here. M…
Comment: What happened to biomart.org
by
Jeremy Leipzig
23k
same with geuvadis.org
Comment: real time PCR data analysis
by
Gordon Smyth
★ 8.3k
Are you doing qPCR for one gene or for several genes?
Comment: protein interaction prediction
by
Fatemeh
▴ 50
Thanks very much for your help. I need to try it.
Comment: real time PCR data analysis
by
Fatemeh
▴ 50
Thanks a lot for the link. The problem is that with this repeated measures, if you put the data from different donors in different rows, fo…
Answer: What happened to biomart.org
by
GenoMax
154k
Looks like EBI let the domain registration expire. The domain was picked up by someone else and turned into the site OP mentions. There use…
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