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121,937 results • Page 132 of 2439
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372
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Best codeml model for estimating omega, M0 ?
codeml ete3 evol
18 months ago by Adrian Pelin ★ 2.7k
1
vote
1
reply
575
views
Pool-Seq same as normal variant calling?
Pool-Seq Variant-Calling
updated 18 months ago by ★ 3.1k • written 18 months ago by • 0
0
votes
1
reply
460
views
Karytotype color annotations
karyotype annotations chromosome color
updated 18 months ago by 166k • written 18 months ago by • 0
0
votes
1
reply
820
views
What alternative method would recommend for conducting gene ontology analysis?
WEGO gene-ontology
updated 18 months ago by ★ 3.1k • written 18 months ago by ▴ 80
2
votes
12
replies
2.8k
views
Nanopore data filtering using fastp
fastp nanopore
18 months ago by emilydolivo97 ▴ 10
1
vote
2
replies
716
views
Is it possible to see so little adipocyte in white adipose tissue?
scRNA-seq
18 months ago by kayah ▴ 20
2
votes
2
replies
734
views
singlecell annotation
scRNA-seq annotation
18 months ago by kayah ▴ 20
3
votes
12
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2.5k
views
Facing problem with extracting phenotypic data from GEO
WGCNA GEO
18 months ago by bioinfo_enthusiast • 0
0
votes
1
reply
879
views
Autodock tools error - The requested operation requires lifting
Autodock MGLTools
updated 18 months ago by 12k • written 18 months ago by • 0
0
votes
0
replies
332
views
t2t Reference gtf file
t2t
18 months ago by Emre • 0
1
vote
2
replies
760
views
BWA MEM Alignment mapped small part of the reads!!
bwa mem
updated 18 months ago by ▴ 40 • written 18 months ago by • 0
1
vote
0
replies
525
views
Job: Job Opening - Fred Hutch - Director of Training & Community
fred-hutchinson
updated 18 months ago by 45k • written 18 months ago by ▴ 30
1
vote
0
replies
491
views
Correlation analysis in single-cell sequencing data
scRNA-seq correlation scATAC-seq
18 months ago by Yingying ▴ 60
0
votes
0
replies
468
views
MIENTURNET - miRNA enrichment analysis
miRNA-enrichment mRNA RNA
updated 18 months ago by 45k • written 18 months ago by ▴ 10
0
votes
5
replies
1.4k
views
Parsing fasta file by coordinates
linux fasta
updated 18 months ago by 154k • written 18 months ago by ▴ 120
0
votes
2
replies
1.1k
views
comparing VCF files
long-reads VCF variants ONT nanopore
18 months ago by eebloom ▴ 110
0
votes
2
replies
818
views
Using velocyto on 3'UTR 10x single-cell RNA-Seq data
single-cell single-end 10x velocyto
18 months ago by Sergio • 0
0
votes
0
replies
625
views
Job: Post-doctoral positions in computational biomedicine
data-science biomedicine machine-learning
updated 18 months ago by 45k • written 18 months ago by ▴ 200
6
votes
13
replies
2.5k
views
Allocating right resources to HPC using LSF scheduler
BWA GATK hpc lsf bsub
18 months ago by Maverick ▴ 10
10
votes
6
replies
6.5k
views
Tutorial: CorLevelPlot - Visualise correlation results, e.g., clinical parameter correlations
correlation corlevelplot
updated 18 months ago by 45k • written 7.6 years ago by 89k
0
votes
5
replies
1.3k
views
How to download RNAseq data of only male KIRC patients?
TCGAbiolinks
18 months ago by bioinfo_enthusiast • 0
0
votes
0
replies
450
views
Multifactor Analysis in DiffBind
DiffBind ChIPseq ChIP-seq
18 months ago by erbrocato • 0
0
votes
0
replies
394
views
How to calculate weighted transcript length for each gene?
salmon tximport rna-seq
updated 18 months ago by 45k • written 18 months ago by ▴ 130
1
vote
2
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714
views
Deseq generating warning "the model matrix is not full rank"
deseq
updated 18 months ago by ▴ 40 • written 18 months ago by ▴ 50
4
votes
2
replies
9.1k
views
Genome annotation: convert gtf to gff3 file
gff3 gtf
updated 18 months ago by • 0 • written 2.9 years ago by ▴ 60
0
votes
3
replies
947
views
What tools to assess coverage, completeness and contamination?
completeness contamination covarage
updated 18 months ago by ★ 30k • written 18 months ago by • 0
0
votes
0
replies
291
views
Metacoder plot_cladogram long calculation times
Metacoder
updated 18 months ago by 45k • written 18 months ago by • 0
8
votes
9
replies
4.9k
views
Snakemake >= version 8 cluster configuration and SLURM job submission
parallelization slurm snakemake cluster
updated 18 months ago by ▴ 20 • written 18 months ago by ▴ 70
0
votes
1
reply
633
views
RNA-seq with normalized cpm count
RNA-seq Deseq2 EdgeR
updated 18 months ago by 45k • written 18 months ago by ▴ 50
0
votes
4
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887
views
Confirm if a genome position falls into a coding exon
exon UCSC coding
updated 18 months ago by 166k • written 18 months ago by ★ 1.3k
1
vote
0
replies
350
views
Downloading immne signature and pathway signature genes form publication and KEGG
genes TRANSCRIPTOME_signature
18 months ago by mrazib0210 ▴ 10
0
votes
1
reply
672
views
How to perform GO enrichment analysis for assembled sequence ?
GO-enrichment Gene-Ontology
updated 18 months ago by 45k • written 18 months ago by ▴ 20
3
votes
0
replies
826
views
Herald: The Biostar Herald for Monday, March 25, 2024
herald
18 months ago by Biostar 3.6k
2
votes
4
replies
2.3k
views
bowtie2 maximum value of MAPQ
bowtie2 bowtie
updated 18 months ago by • 0 • written 5.1 years ago by ▴ 40
1
vote
8
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1.4k
views
0-based coordinates from samtools depth
samtools coverage depth
updated 18 months ago by 166k • written 18 months ago by ▴ 180
1
vote
0
replies
383
views
checkm lineage.ms output file
checkm lineage
18 months ago by A_heath ▴ 170
31
votes
14
replies
14k
views
11 follow
Finding Rrna Genes In Metagenomic Data
rna rRNA metagenomics
updated 18 months ago by 45k • written 15.0 years ago by ▴ 650
6
votes
12
replies
2.0k
views
Variant calling of GBS data
GBS variants BQSR
18 months ago by analyst ▴ 70
2
votes
11
replies
2.2k
views
RNA seq aligner?
Alignment
18 months ago by tesfaye • 0
1
vote
6
replies
1.4k
views
Coverage depth map of genome from multiple sample coverage bedgraphs?
bedops bedmap coverage
18 months ago by Agastya ▴ 10
7
votes
2
replies
1.1k
views
Forum: Can questions and answers on biostars be asked only in English? Can't I use Russian for example?
language
updated 18 months ago by 56k • written 18 months ago by • 0
0
votes
0
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405
views
OSCC Dataset downlod using TCGA biolink
R OSSC TCGAbiolink GDC
updated 18 months ago by 45k • written 18 months ago by • 0
3
votes
1
reply
1.1k
views
Tool: TGSFilter, An ultra-fast and efficient tool for long reads filtering and trimming
genome-assembly filtering reads trimming
updated 18 months ago by • 0 • written 18 months ago by ▴ 200
0
votes
3
replies
864
views
two channel detection in SNP-chip
DNA SNPchip 2-channel
updated 18 months ago by 5.1k • written 18 months ago by • 0
2
votes
3
replies
838
views
Reference mouse phased vcf
mm10 vcf phasing Beagle
18 months ago by machoo • 0
0
votes
0
replies
443
views
Public datasets for genome-wide level mRNA-protein correlation calculation?
correlation protein mRNA
17 months ago by Shicheng Guo ★ 9.6k
0
votes
0
replies
366
views
What is the usual basecalls length and reference mapping length relationship?
genome alignment rna-seq
updated 18 months ago by 9.0k • written 18 months ago by • 0
1
vote
1
reply
590
views
Difference in relative abundance between MicrobiomeDB and r phyloseq
phyloseq
updated 18 months ago by ▴ 420 • written 18 months ago by • 0
3
votes
5
replies
1.8k
views
How to filter Illumina Nirvana variant annotation?
nirvana filtration
updated 18 months ago by 166k • written 18 months ago by • 0
0
votes
0
replies
641
views
News: Online course: Introduction to GWAS
GWAS Imputation StatisticalPower
18 months ago by Physalia-courses ★ 2.6k
121,937 results • Page 132 of 2439
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Answer: Linear regression vs DESeq2 models for DEG analysis
A: What'S The Difference Between Cds And Orf?
A: What'S The Difference Between Cds And Orf?
A: What'S The Difference Between Cds And Orf?
A: What'S The Difference Between Cds And Orf?
Answer: Linear regression vs DESeq2 models for DEG analysis
Answer: Linear regression vs DESeq2 models for DEG analysis
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Recent Replies
Comment: Linear regression vs DESeq2 models for DEG analysis by swbarnes2 15k
It is not clear to me that you can meaningfully correct for 5 different batches with two samples a piece.
Comment: Does this adapter content from fastqc to warrant trimming prior to alignment? by GenoMax 154k
> I am not sure if there would be primer dimer sequences I should have said adapter dimers above. Correction made.
Comment: Help understanding this per base sequence content failure fastqc plot by lieven.sterck 15k
that 151st base added is a base to ignore (it's a kind of random addition) ... if I recall correctly it's a consequence of the technology. …
Comment: Linear regression vs DESeq2 models for DEG analysis by FioG • 0
@swbarnes2 Thank you for your response! I am new to RNA seq analysis and was originally recommended to use the LM method following cqn and …
Comment: Does this adapter content from fastqc to warrant trimming prior to alignment? by curious ▴ 890
Thank you, the adapter sequences are specified as CTGTCTCTTATACACATCT+ATGTGTATAAGAGACA is the SampleSheet.csv file from the sequencing run.…
Comment: how to explain the sample size discrepancy in UCSC Xena by nuorain ▴ 40
Thank you very much.
Answer: how to explain the sample size discrepancy in UCSC Xena by i.sudbery 22k
Because there wasn't RNA-seq analysis performed for every sample in TCGA?
Answer: Linear regression vs DESeq2 models for DEG analysis by i.sudbery 22k
There are two main problems with using linear models for read-count based analyses. Firstly, linear models assume a normal distribution…
Comment: real time PCR data analysis by ATpoint 89k
I cannot guide on GraphPad. It's commercial software so better contact their support.
Answer: Linear regression vs DESeq2 models for DEG analysis by swbarnes2 15k
DE genes in bulk RNASeq is what DESeq2 was made for, so why wouldn't you use it? RPKM is not an appropriate normalization method here. M…
Comment: What happened to biomart.org by Jeremy Leipzig 23k
same with geuvadis.org
Comment: real time PCR data analysis by Gordon Smyth ★ 8.3k
Are you doing qPCR for one gene or for several genes?
Comment: protein interaction prediction by Fatemeh ▴ 50
Thanks very much for your help. I need to try it.
Comment: real time PCR data analysis by Fatemeh ▴ 50
Thanks a lot for the link. The problem is that with this repeated measures, if you put the data from different donors in different rows, fo…
Answer: What happened to biomart.org by GenoMax 154k
Looks like EBI let the domain registration expire. The domain was picked up by someone else and turned into the site OP mentions. There use…
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