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121,976 results • Page
243 of 2440
Sort: Rank
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Votes
Replies
0
votes
6
replies
1.9k
views
IsoformSwitchAnalyserR lmportR data warning.
R
IsoformSwitchAnalyzeR
2.3 years ago by
Priyanka
▴ 10
0
votes
1
reply
1.2k
views
Help manually processing strand in paired-end reads when fishing for lariats in bulk RNA-seq
lariat
splicing
rna-seq
2.3 years ago by
txema.heredia
▴ 250
0
votes
3
replies
1.1k
views
GATK4.3.0
VQSR
updated 2.3 years ago by
dthorbur
★ 3.1k • written 2.3 years ago by
wonde2000
• 0
2
votes
2
replies
1.1k
views
Genome scope for Hybrid assembly
Genomescope
fastq
Hybrid-assembly
updated 2.3 years ago by
Ram
45k • written 2.3 years ago by
Sowmya Pulapet
▴ 70
1
vote
2
replies
908
views
Normalisation of RNA data from different protocols to allow comparison
differential-expression
RNA-seq
normalisation
updated 2.3 years ago by
Ram
45k • written 2.3 years ago by
nicola.calonaci
• 0
5
votes
6
replies
2.2k
views
How to reconstruct a genome from a contigs file?
fasta
genome
contig
genomics
updated 2.3 years ago by
dthorbur
★ 3.1k • written 2.3 years ago by
Elisa
• 0
2
votes
2
replies
1.4k
views
rust_htslib unrecognized filter ID
htslib
rust
SNP
filtering
2.3 years ago by
raphael.B
▴ 540
0
votes
1
reply
887
views
ChromoMap
R
chromoMap
updated 2.3 years ago by
lakshayanand15
▴ 90 • written 2.3 years ago by
pthom010
▴ 40
2
votes
5
replies
2.5k
views
[E::idx_find_and_load] Could not retrieve index file for Singularity /NextFlow
dsl2
nextflow
singularity
2.3 years ago by
Kiran
▴ 80
2
votes
2
replies
2.3k
views
OTU, ASV and Kraken2
OTU
metagenomics
ASV
kraken2
updated 2.3 years ago by
Asaf
10k • written 2.3 years ago by
Mgs3
▴ 30
0
votes
2
replies
2.4k
views
Forum:
[Detailed Question] How to Normalize of Metagenomics Gene Abundances (with HMMs models)
normalization
updated 2.3 years ago by
Asaf
10k • written 2.3 years ago by
Davide
• 0
0
votes
1
reply
960
views
Where can I find a TF-target gene network for skin tissue
Tissue-specific-network
TF-activity
updated 2.3 years ago by
e.r.zakiev
▴ 260 • written 4.0 years ago by
BioQueen
▴ 30
0
votes
2
replies
986
views
Retrieving alignment scores with vg surject
vg
2.3 years ago by
Gabriela
• 0
2
votes
8
replies
2.6k
views
The .bcf file generated by bcftools mpileup cannot be opened with BCFtools
bcftools
variant-calling
2.3 years ago by
liying
▴ 20
2
votes
1
reply
1.2k
views
SRA toolkit access denied
SRAtoolkit
updated 2.3 years ago by
Ram
45k • written 2.3 years ago by
Jarjayes
▴ 10
0
votes
0
replies
474
views
Seeking data(refractive index) of Healthy miRNA & Cancerous miRNA
miRNA
refractive-index
updated 2.3 years ago by
Ram
45k • written 2.3 years ago by
wei
• 0
1
vote
0
replies
952
views
Understanding presto::wilcoxauc group_by
scranseq
differential-expression
presto
updated 2.3 years ago by
Ram
45k • written 2.3 years ago by
aerlaut
▴ 10
0
votes
1
reply
943
views
Heatmap / Gene List Similarity
R
updated 2.3 years ago by
mohammadhassanj
▴ 260 • written 2.3 years ago by
cthangav
▴ 110
38
votes
8
replies
2.9k
views
6 follow
News:
What happens when a bioinformatician has his own genome sequenced for $300?
DNAseq
DNA
WGS
updated 2.3 years ago by
Alex Reynolds
36k • written 2.3 years ago by
David Langenberger
11k
2
votes
2
replies
910
views
Validating uniqueness of NCBI genomes
genomes
strains
updated 2.3 years ago by
Mensur Dlakic
★ 30k • written 2.3 years ago by
Afreen
• 0
1
vote
5
replies
1.8k
views
rank SNPs after elastic net modeling
SNPs
R
elastic-net
modeling
updated 2.3 years ago by
Shred
★ 1.6k • written 2.3 years ago by
rheab1230
▴ 150
0
votes
0
replies
585
views
how to plot heatmap in r for all the gene across tissues to see distribution of snps
snp
R
heatmap
updated 2.3 years ago by
Ram
45k • written 2.3 years ago by
rheab1230
▴ 150
0
votes
2
replies
942
views
Missing primers in multi amplicon sequencing
primers
sequencing
2.3 years ago by
madalton
▴ 10
0
votes
2
replies
1.4k
views
Extract samples from a VCF file that contain marker
bcftools
SNPs
updated 2.3 years ago by
WouterDeCoster
48k • written 2.3 years ago by
Cèlia
• 0
0
votes
0
replies
710
views
How to set (or change) values in minfi::‘RGChannelSet’ object
minfi
RGChannelSet
2.3 years ago by
Bosberg
▴ 50
0
votes
0
replies
563
views
Visualise three samples with KO abundance using Pathview
KEGG
pathview
R
KO
2.3 years ago by
AliceLee
• 0
1
vote
8
replies
2.3k
views
Is it possible to use salmon alevin tool for total rna seq samples?
salmon
alignment
2.3 years ago by
PK
▴ 130
4
votes
0
replies
1.1k
views
News:
A Practical Introduction to Single-Cell RNA-Seq Data Analysis (November 8-10, 2023 in Berlin, Germany)
NGS
RNA-Seq
single-cell
workshop
2.3 years ago by
David Langenberger
11k
3
votes
2
replies
1.5k
views
Very low p-values
R
p-values
Manhattan
plots
2.2 years ago by
am29
▴ 60
0
votes
2
replies
1.7k
views
analysing bismark.cov.gz files
R
methylation
bismark
2.3 years ago by
adR
▴ 130
1
vote
3
replies
1.5k
views
Count SNP per read
VCF
SNP
RNA-Seq
MSA
updated 2.3 years ago by
colindaven
8.0k • written 2.3 years ago by
Saran
▴ 50
0
votes
7
replies
1.8k
views
All question mark quality scores on several studies
quality-score
shotgun
illumina
updated 2.3 years ago by
Ram
45k • written 2.3 years ago by
Jonathan
▴ 10
0
votes
0
replies
1.3k
views
Job:
Funded PhD / Doctoral Position in Biomedical Data Sciences & Bioinformatics for studying human health and disease
PhD
Modeling
Cancer
Data-Science
updated 2.3 years ago by
Ram
45k • written 2.3 years ago by
a_gruber
▴ 40
4
votes
4
replies
1.8k
views
Choice for statistical test (and R package)
RNA-seq
DGE
2.3 years ago by
psm
▴ 170
1
vote
1
reply
1.0k
views
Truvari error "Unable to fetch chrx" and TypeError: object of type 'NoneType' has no len()
vcf
truvari
cnv
benchmarking
updated 2.3 years ago by
Ram
45k • written 2.3 years ago by
guntul
▴ 40
5
votes
2
replies
2.0k
views
Tools for sentiment analysis that have been vetted on pubmed abstracts
sentiment-analysis
pubmed
Python
R
updated 2.3 years ago by
Ram
45k • written 2.3 years ago by
LauferVA
4.8k
0
votes
4
replies
1.5k
views
How to join multiple large .tsv (> 20 GB, bed file) files by two identifier?
bash
Python
R
bed
updated 2.3 years ago by
Ram
45k • written 2.3 years ago by
kabir.deb
▴ 90
0
votes
2
replies
2.6k
views
Adapter trimming using fastp
trimmomatic
fastp
adapter
trimming
2.3 years ago by
Shin Taguchi
▴ 40
0
votes
6
replies
2.2k
views
deML: ERROR: Discrepancy between fastq files, different names with first index
deML
updated 2.3 years ago by
Felipe
• 0 • written 6.5 years ago by
boonfei
• 0
1
vote
2
replies
1.5k
views
Removing contamination from WGS nanopore reads prior to assembly
assembly
contamination
nanopore
de-novo
2.3 years ago by
harte
• 0
0
votes
1
reply
809
views
Count unique sequences from bowtie file
barcode
library
updated 2.3 years ago by
GenoMax
154k • written 2.3 years ago by
Jinsoul
• 0
0
votes
2
replies
1.3k
views
txt to .maf format
maftools
updated 2.3 years ago by
Ram
45k • written 3.3 years ago by
Maryam
▴ 10
1
vote
1
reply
1.0k
views
Peak calling a general bed file (not reads)
peaks
genomic-density
peak-calling
bed
updated 2.3 years ago by
jared.andrews07
★ 19k • written 2.3 years ago by
jrose
▴ 30
0
votes
1
reply
925
views
Pre-filtering of annotated isoforms based on splice junctions
RSEM
isoforms
splicing
RNA-seq
Kallisto
updated 2.3 years ago by
dthorbur
★ 3.1k • written 2.3 years ago by
I0110
▴ 160
0
votes
3
replies
1.4k
views
Bowtie2 and BWA-MEM not working
Bowtie2
2.3 years ago by
Matt01
• 0
0
votes
2
replies
1.3k
views
gesso model in R
gesso
R
2.3 years ago by
Eliza
▴ 30
0
votes
0
replies
626
views
Very few snp and indels variation were identified using PAV variation input file base on vg call
vg
updated 2.3 years ago by
Ram
45k • written 2.3 years ago by
Wanglh
• 0
7
votes
10
replies
2.5k
views
How to get genes associated with open chromatin regions?
ATAC-seq
2.3 years ago by
Chris
▴ 360
0
votes
2
replies
1.7k
views
Identify if variants are somatic or germline from VCF file
VCF
somatic-variants
updated 2.3 years ago by
Ram
45k • written 2.3 years ago by
Rozita
▴ 40
0
votes
0
replies
747
views
Finding ORF via UCSC genome browser
genome
RNA-Seq
sequencing
2.3 years ago by
Apex92
▴ 320
121,976 results • Page
243 of 2440
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Answer: Nextflow: How to format input tuple for STAR_ALIGN process with STAR index direc
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Comment: GUI commercial software for 10x single cell gene expression analysis
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I am looking back now, and it appears that the files processed after kmer correction (rcorrector) seem to match up, except the first sample…
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People publish predictive papers all the time that have zero experimental support. There are different degrees of "lacking experimental val…
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You should give the reviewer something. An independent way of in silico validation, other supporting analysis. Just "no" might lead to reje…
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