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121,978 results • Page
244 of 2440
Sort: Rank
Rank
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Votes
Replies
0
votes
2
replies
1.7k
views
Identify if variants are somatic or germline from VCF file
VCF
somatic-variants
updated 2.3 years ago by
Ram
45k • written 2.3 years ago by
Rozita
▴ 40
0
votes
0
replies
747
views
Finding ORF via UCSC genome browser
genome
RNA-Seq
sequencing
2.3 years ago by
Apex92
▴ 320
0
votes
4
replies
1.5k
views
gene enrichmnet analysis
R
gene-enrichment-analysis
updated 2.3 years ago by
Ram
45k • written 2.3 years ago by
Eliza
▴ 30
3
votes
5
replies
2.4k
views
seqboot ERROR: sequences out of alignment (SOLVED)
alignment
sequence
protein
bootstrap
phylogenetics
updated 2.3 years ago by
ATpoint
89k • written 2.3 years ago by
mcsimenc
▴ 30
1
vote
4
replies
2.8k
views
Difference in fastqc output after trimming with fastp vs afterqc
fastqc
fastp
ngs
ddrad
afterqc
2.3 years ago by
ymberzal
• 0
0
votes
0
replies
683
views
COSMIC Actionability data files format (mutation ID)
variants
COSMIC
cancer
2.3 years ago by
bt_cepo
▴ 40
0
votes
0
replies
676
views
PATRIC vs. RefSeq annotation for SARS-CoV-2
SARS-CoV-2
RefSeq
PATRIC
2.3 years ago by
vembha
• 0
1
vote
2
replies
1.4k
views
Iterative normalization for large files using BBnorm
BBTools
BBNorm
NovaSeq
metagenomics
normalization
2.3 years ago by
Bryan
▴ 20
0
votes
5
replies
5.0k
views
How to create a Seurat object from the `xxx_metadata.txt.gz ` and `xxx_counts.txt.gz` files?
Seurat
updated 2.3 years ago by
swbarnes2
15k • written 2.3 years ago by
Sun
• 0
0
votes
0
replies
446
views
Identifying novel loci
GWAS
2.3 years ago by
en_keser
• 0
0
votes
1
reply
770
views
Issue Running SomaticCombiner
somaticcombiner
vcf
muse
mutect2
updated 2.2 years ago by
a.angeles
• 0 • written 2.3 years ago by
Emily
• 0
0
votes
0
replies
624
views
Reduce set of chromosomes in Pangenome graph
pangenome
updated 2.3 years ago by
Ram
45k • written 2.3 years ago by
anivlete
• 0
0
votes
2
replies
1.4k
views
TCGA methylation data analysis
CHAMP
TCGA
methylation
updated 2.3 years ago by
Zhenyu Zhang
★ 1.3k • written 2.3 years ago by
dilrajkaur766
• 0
1
vote
2
replies
1.5k
views
Creating a differential expression network
Differential-Expression-Network
RNA-seq
DEG
2.3 years ago by
mavy
▴ 10
0
votes
1
reply
1.2k
views
bioconductor caches fails to load/corrupted for annotation databases
TxDb.Hsapiens.UCSC.hg19.knownGene
BiocFileCache
AnnotationDbi
R
updated 2.3 years ago by
Ram
45k • written 2.3 years ago by
Alewa
▴ 190
4
votes
14
replies
4.0k
views
RSEM implementation
RSEM
updated 2.3 years ago by
Ram
45k • written 2.3 years ago by
anasjamshed
▴ 140
2
votes
3
replies
1.4k
views
Ignoring file size limit when downloading all SRA XML files
xml
SRA
updated 2.3 years ago by
GenoMax
154k • written 2.3 years ago by
firefox91
• 0
1
vote
2
replies
2.1k
views
1000G Phase 3 GRCh38 liftover - EUR-nonFIN subset
1000Genomes
updated 2.3 years ago by
Ram
45k • written 4.4 years ago by
gokberk
▴ 90
2
votes
2
replies
2.3k
views
6 follow
Why runing scDblFinder before and after removing low QC cells gives different results
singleCellExperiment
scDblFinder
SMART-Seq
updated 22 months ago by
e.r.zakiev
▴ 260 • written 2.3 years ago by
Assa Yeroslaviz
★ 1.9k
1
vote
1
reply
925
views
Need help regarding miRNA data analysis
miRDeep2
updated 2.3 years ago by
biofalconch
★ 1.3k • written 2.3 years ago by
kuttibiotech2009
▴ 30
0
votes
1
reply
1.1k
views
Truvari error: Failed to parse TBX_VCF - "ead mapping qualities">"
vcf
truvari
benchmarking
updated 2.3 years ago by
WouterDeCoster
48k • written 2.3 years ago by
guntul
▴ 40
0
votes
2
replies
1.6k
views
Question about 16S rRNA reads we got from a sequencing company
16S
adapters
metabarcoding
primers
amplicon
2.3 years ago by
KQUB
• 0
4
votes
5
replies
2.0k
views
Losing a lot of significant genes after removing outliers. Having cell type composition as covariates
DESeq2
RNA-seq
2.3 years ago by
Sara
▴ 40
4
votes
6
replies
1.8k
views
Transcript quantification
rna-seq
transcriptome
SRA
updated 2.3 years ago by
ATpoint
89k • written 2.3 years ago by
firefox91
• 0
4
votes
3
replies
3.9k
views
DESeq2 Normalization and Pre-Filtering
DESeq2
RNA-Seq
Differential-Gene-Expression
updated 2.3 years ago by
LauferVA
4.8k • written 2.3 years ago by
turcoa1
• 0
2
votes
0
replies
1.5k
views
Herald:
The Biostar Herald for Thursday, June 15, 2023
herald
2.3 years ago by
Biostar
3.6k
0
votes
0
replies
864
views
Missing SNPs on an array using PLINK
array
SNP
PLINK
updated 2.3 years ago by
Ram
45k • written 2.3 years ago by
Vanna Hay
• 0
1
vote
0
replies
578
views
Custom proteomes
proteome
FASTA
updated 2.3 years ago by
Ram
45k • written 2.3 years ago by
paolo
▴ 70
4
votes
6
replies
3.3k
views
The same qvalues are reported to different pvalues
next-gen
r
updated 2.3 years ago by
bhumm
▴ 200 • written 7.0 years ago by
carloscardoso.bio
▴ 10
2
votes
1
reply
2.0k
views
Visualize mitochondrial genome
mitochondria
mitogenome
updated 2.3 years ago by
shelkmike
★ 1.8k • written 2.3 years ago by
gubrins
▴ 350
4
votes
2
replies
1.1k
views
Veen diagram in RNA-Seq
vulgare
hordeum
veen-diagram
rna-seq
updated 2.3 years ago by
Ram
45k • written 2.3 years ago by
martta95
▴ 10
3
votes
0
replies
1.3k
views
Job:
Challenging, fully funded post-doctoral position in probabilistic modelling. Denmark
alternative-splicing
omics
isoforms
updated 2.3 years ago by
Ram
45k • written 2.3 years ago by
Kristoffer Vitting-Seerup
★ 4.2k
2
votes
0
replies
1.2k
views
Job:
Fully funded PhD opening in transcriptomics and isoform analysis
transcriptomics
isoforms
RNA-seq
alternative-splicing
updated 2.3 years ago by
Ram
45k • written 2.3 years ago by
Kristoffer Vitting-Seerup
★ 4.2k
1
vote
0
replies
982
views
Job:
Principal Investigator - Bioinformatics - Poland
ngs
transcriptomics
proteomics
genomics
r
2.3 years ago by
michal.golabek
▴ 10
1
vote
0
replies
999
views
Job:
Postdoc in Applied bioinformatics (m/f/x) Germany
Postdoc
updated 2.3 years ago by
Ram
45k • written 2.3 years ago by
jobs
▴ 10
1
vote
1
reply
822
views
Best practice for normalizing sequencing depth for differential miRNA expression?
DESeq2
miRge3
normalization
miRNA
updated 2.3 years ago by
biofalconch
★ 1.3k • written 2.3 years ago by
Trivas
★ 1.9k
0
votes
1
reply
1.4k
views
Uploading 10x Data into R for Monocle 3
scRNA-seq
10x
single-cell
monocle
updated 2.3 years ago by
fracarb8
★ 1.7k • written 2.3 years ago by
Cherilyn
• 0
0
votes
0
replies
641
views
Uploading WGS data converted to 23andme format .txt to mthfrsupport.com Sterling's app
23andme
WGSextract
updated 2.3 years ago by
Ram
45k • written 2.3 years ago by
pippo
• 0
1
vote
3
replies
1.2k
views
Unique Variants for a sample
vcf
snp
bcftools
2.3 years ago by
kat.bi
• 0
18
votes
15
replies
5.5k
views
6 follow
Models For Biology User Types (Personas)?
biology
updated 2.3 years ago by
bryan.smith4756
• 0 • written 14.2 years ago by
Egon Willighagen
5.4k
0
votes
2
replies
1.1k
views
Confirming intron length
genome
RNA-Seq
sequencing
2.3 years ago by
Apex92
▴ 320
0
votes
2
replies
1.2k
views
RNAseq levels of expression
Heatmap
updated 2.3 years ago by
seidel
11k • written 2.3 years ago by
smanzano250800
• 0
0
votes
2
replies
1.1k
views
How to draw a picture like this?
meta
2.3 years ago by
xiaokalami
• 0
0
votes
5
replies
4.2k
views
Please solve this problem " requires numeric/complex matrix/vector arguments"
R
matrix
updated 15 months ago by
Ram
45k • written 2.3 years ago by
soojinima
▴ 10
21
votes
13
replies
4.7k
views
11 follow
Biology Database Project
programming
dataset
updated 2.3 years ago by
bryan.smith4756
• 0 • written 13.7 years ago by
Mattyd
▴ 10
0
votes
0
replies
540
views
Exonerate fails to find match
exonerate
msa
2.3 years ago by
Marina
• 0
4
votes
11
replies
4.3k
views
How do I correctly format my limma/eBayes code?
R
limma
eBayes
updated 2.3 years ago by
Ram
45k • written 2.3 years ago by
John
• 0
0
votes
1
reply
822
views
NCBI Genome Download Sequence Report Indexing Sequences FNA file Tool Exist?
FNA
JSON
NCBI
updated 2.3 years ago by
Ram
45k • written 2.3 years ago by
davidawarshawsky
• 0
0
votes
2
replies
1.4k
views
More Efficient: Whole Genome VCF splitting with and without tbi file
bcftools
vcf
tbi
updated 2.3 years ago by
Ram
45k • written 2.3 years ago by
S
• 0
1
vote
1
reply
913
views
How to extract one Seurat object from an RDS file.
seurat
object
updated 2.3 years ago by
jared.andrews07
★ 19k • written 2.3 years ago by
Andy
▴ 120
121,978 results • Page
244 of 2440
Recent Votes
Comment: GUI commercial software for 10x single cell gene expression analysis
Answer: Quantification using salmon in alignment-based mode after minimap2 run
Answer: Quantification using salmon in alignment-based mode after minimap2 run
Answer: vcf to bam
Tumor grade from miRNA data set from TCGA database
Answer: Nextflow: How to format input tuple for STAR_ALIGN process with STAR index direc
Answer: Nextflow: How to format input tuple for STAR_ALIGN process with STAR index direc
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Comment: GUI commercial software for 10x single cell gene expression analysis
by
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Interesting pricing model : https://www.nygen.io/pricing Depending on user needs could be used (or certainly tested) for free. And this is …
Answer: Dorado in PowerShell on Windows
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If you're using WSL, PowerShell has nothing to do with this. It also sounds like a better question for your sequencing facility/provider ra…
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154k
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How much short read coverage do other studies have which you want to replicate? Are those studies using whole genomes creating using long r…
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Can you provide more information on the use case? If they want to generate data for a publication I would argue that the majority of the GU…
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by
LGG
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I believe using `ignoreTxVersion = TRUE` is supposed to take care of that
Comment: Which aligner is more suitable for ONT R10.4.1 Dorado-corrected reads: minimap2
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tungsega
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Just a very brief summary of the results using the latest versions of minimap2 and winnowmap (by `samtools stats`). It seems that winnowma…
Comment: Quantification using salmon in alignment-based mode after minimap2 run
by
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★ 1.9k
great response. thank for mentioning this one. Ill definitely try oarfish. would you recommend running it with the raw sequencing files or…
Comment: Quantification using salmon in alignment-based mode after minimap2 run
by
Assa Yeroslaviz
★ 1.9k
Thanks for the comment. I am aware of the workflow. I saw they use StringTie for quantification. I've had good experience with the pseudo-a…
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I needed to be aware of queue channels which you can read about here: https://training.nextflow.io/2.0/basic_training/channels/#queue-c…
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I am looking back now, and it appears that the files processed after kmer correction (rcorrector) seem to match up, except the first sample…
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