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Recent Replies
Comment: why do I get this error while reading single cell RNA seq data in R
by
GenoMax
146k
It is often useful to do a quick search with the `error`. Here is one of the first search results that explains the issue: https://github.c…
Comment: batch correction limma package (bead based assay data)
by
MC_J
•
0
Many thanks!
I’m planning to use Limma for batch correction, but I’ve been advised that the corrected data should generally be used only f…
Comment: I need help with this scripts. Thanks.
by
Dunois
★
2.6k
You are welcome. I wish you a nice day too.
Comment: I need help with this scripts. Thanks.
by
nuorain
▴
20
yes, the problem is solve luckily. Have a nice day.
Comment: Using DNA Methylation Data as Input for ChromHMM
by
Ming Tommy Tang
★
4.3k
this tool? https://github.com/malonzm1/LuxHMM or segway https://segway.hoffmanlab.org/doc/3.0.4/index.html
Comment: I need help with this scripts. Thanks.
by
GenoMax
146k
For smaller code chunks you can simply copy and paste the text. Then format it with mono-space font as `code` using the `101010` button in …
Comment: I need help with this scripts. Thanks.
by
nuorain
▴
20
Hi GenoMax, Thank you for your comments. But I don't know how to use Github gist. Could you please advise how to use Github gist? Thank you…
Answer: I need help with this scripts. Thanks.
by
nuorain
▴
20
Hi, Dunois,
Thank you for your comments. The output of names(data[[1]]) is [1] "ek.txt" which is not the file I shared in my second picture…
Comment: RNA-seq for samples with RIN<3
by
svl
•
0
Did you sequence these in the end? Interested to hear wha sort of results you got if so. I have a similar issue with low RIN from some hard…
Comment: What is the best way to rank genes for GSEA?
by
hermidalc
▴
60
FDR is a specific type of adjusted p-value, its the Benjamini-Hochberg false discovery rate. There are other methods too for adjusting p-va…
Comment: I need help with this scripts. Thanks.
by
GenoMax
146k
Do not post screenshots of code. If you wish to show a large amount of code use a `GitHub gist`.
Comment: I need help with this scripts. Thanks.
by
Dunois
★
2.6k
Please share the output of `names(data[[1]])`.
Comment: Different annotations for different isoforms from the same gene
by
Dunois
★
2.6k
Thank you for these additional details.
I believe what is possibly happening here is that some of these "isoforms" (a misnomer at this jun…
Comment: Can anyone share with me the R code for GSEA analysis?
by
nuorain
▴
20
Thanks for your comments.
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