0
votes
1
reply
341
views
0
votes
5
replies
339
views
0
votes
1
reply
159
views
updated 2 days ago by
rpolicastro
12k
•
written 2 days ago by
saipra003
▴
10
0
votes
0
replies
80
views
2 days ago by
jorge.cortes.miranda
•
0
0
votes
0
replies
99
views
2 days ago by
reaset41
•
0
0
votes
0
replies
105
views
0
votes
1
reply
344
views
updated 1 day ago by
sativus
▴
10
•
written 14 months ago by
Thind amarinder
▴
340
0
votes
4
replies
226
views
0
votes
0
replies
96
views
0
votes
6
replies
366
views
0
votes
0
replies
128
views
0
votes
0
replies
114
views
1 day ago by
biology_inform
▴
50
0
votes
0
replies
96
views
0
votes
4
replies
298
views
0
votes
0
replies
109
views
0
votes
3
replies
264
views
0
votes
1
reply
217
views
0
votes
1
reply
147
views
0
votes
3
replies
195
views
0
votes
0
replies
79
views
1 day ago by
maxlaubstein
•
0
0
votes
0
replies
85
views
0
votes
3
replies
172
views
0
votes
1
reply
149
views
updated 1 day ago by
Nitin Narwade
★
1.5k
•
written 1 day ago by
tss243
•
0
0
votes
4
replies
213
views
updated 1 day ago by
Nitin Narwade
★
1.5k
•
written 1 day ago by
abourrieau
•
0
0
votes
2
replies
218
views
updated 1 day ago by
fracarb8
★
1.3k
•
written 1 day ago by
synat.keam
▴
80
0
votes
1
reply
121
views
0
votes
9
replies
445
views
0
votes
0
replies
129
views
0
votes
5
replies
308
views
updated 1 day ago by
Istvan Albert
99k
•
written 3 days ago by
Bjorn
•
0
0
votes
1
reply
171
views
updated 23 hours ago by
Scooter
▴
180
•
written 3 days ago by
hellokwmin
•
0
0
votes
1
reply
251
views
0
votes
1
reply
215
views
0
votes
1
reply
131
views
0
votes
1
reply
88
views
updated 23 hours ago by
sil_bioinfo
▴
30
•
written 23 hours ago by
carlopecoraro2
★
2.4k
0
votes
3
replies
190
views
updated 21 hours ago by
Istvan Albert
99k
•
written 1 day ago by
Jingfang
•
0
0
votes
2
replies
250
views
0
votes
1
reply
133
views
updated 20 hours ago by
Istvan Albert
99k
•
written 23 hours ago by
curious
▴
730
0
votes
0
replies
76
views
Recent Votes
Recent Locations •
All
Whitefish, MT, 1 minute ago
India, 2 minutes ago
Russia, 2 minutes ago
Cambridge, MA, 3 minutes ago
India, 3 minutes ago
France, 4 minutes ago
Germany, 6 minutes ago
Recent Awards •
All
Popular Question to
DR
▴
10
Commentator to
Devon Ryan
104k
Popular Question to
gernophil
▴
40
Teacher to
chrchang523
10k
Commentator to
ATpoint
78k
Popular Question to
Peerzada
•
0
Recent Replies
Comment: Yes .. BBMap can do that! - Part III clumpify (mark (and dedupe) duplicates with
by
jucosie
•
0
Hello,
I am reviewing some old scripts in which I used clumpify.sh (BBMap 38.90) with the following parameters:
./clumpify.sh in1=$dir_c…
Comment: Problematic fastq files...How can we trust them?
by
Istvan Albert
99k
perhaps ask her about the origin of the data, how was the data postprocessed
FASTQ data is a bit more resilient than other types of data a…
Answer: GO categorization
by
Istvan Albert
99k
If you have an organism that lacks the GO to gene mapping then you have to find a way to assign these terms to your genes.
Basically your …
Comment: doubt about usage of megahit
by
Istvan Albert
99k
you have not mentioned what kind of resources you have, how much data you have to process and what the expected genome/transcriptome sizes …
Comment: Problematic fastq files...How can we trust them?
by
ATpoint
78k
Then tell her to bring proper data. In the lab you also don't use buffers with mold growing in it, and in bioinformatics we don't start wit…
Comment: Problematic fastq files...How can we trust them?
by
blackadder
▴
30
Its not my data. An external researcher is visiting and she wanted from us to do some bioinformatics... The samples were not sequenced by u…
Comment: Tools or R / Python packages to perfom ML models
by
sil_bioinfo
▴
30
Oh, I understand. Thank you so much for your help!
The truth is that there is so much information, so many packages, libraries, tutorials,…
Comment: Tools or R / Python packages to perfom ML models
by
Matthias Zepper
4.2k
Just to clarify:
Many ML models are trained and executed using dedicated software libraries for machine learning and artificial intellige…
Answer: Problematic fastq files...How can we trust them?
by
ATpoint
78k
> I assume that maybe all these are fixable with a script but my question is, can we trust these files? Is it worth spending time and effor…
Comment: Tools or R / Python packages to perfom ML models
by
sil_bioinfo
▴
30
My main idea is to be able to classify patients with active TB, LTBI and healthy patients as well as possible. The problem is that within t…
Comment: scRNA-seq: Consistent low number of cells and low fraction reads across the samp
by
rpolicastro
12k
They could have saved themselves a ton of money by sequencing this on a miseq.
Comment: Annotate Unplaced Scaffold with Chromosome Information
by
cmdcolin
★
3.4k
I think there are tools like ragtag https://github.com/malonge/RagTag that could help. you can also align your reads back to your new assem…
Comment: An incomprehensible error with R package gggenes
by
ATpoint
78k
It's not stupid, just a bit lazy ;-)
Comment: Adding functional annotation and meta-data of MAKER/BRAKER GFF
by
ben@f
•
0
Hi, did you find an effective solution for this problem? beside Agat and
Comment: An incomprehensible error with R package gggenes
by
alice005201314
•
0
Thank you. I asked a stupid question.
Traffic: 2257 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6