Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Post does not exist.
Limit : all time
all time
today
this week
this month
this year
117,022 results • Page
1 of 2341
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
1
view
ENCORI or starBase : ceRNA data retrieval using Web API and curl
ceRNA
ENCORI
curl
microRNA
starBase
just now by
Bhavya
• 0
0
votes
0
replies
6
views
How to deal with possibly important predictors omitted during the building of an OLS multivariant linear regression model?
multivariant-linear-regression
confounding
7 minutes ago by
JorgeVallejo
▴ 20
0
votes
0
replies
18
views
transcriptome annotation
annotation
transcriptome
cone
trinity
snails
conus
genome
46 minutes ago by
Asim Bin Arshad
• 0
0
votes
3
replies
43
views
Why most genes have high padj values
deg
padj
bulkRNA
updated 51 minutes ago by
ATpoint
82k • written 1 hour ago by
mnx0723
• 0
7
votes
14
replies
2.8k
views
6 follow
How to find tandem duplications pattern in a DNA sequence
Repeat
updated 2 hours ago by
micah
▴ 30 • written 3.1 years ago by
kumajis
• 0
0
votes
1
reply
44
views
How to find identical sequences in genome fasta file (by Python or any possible program) ?
fasta
identical
sequences.
updated 2 hours ago by
Pierre Lindenbaum
161k • written 2 hours ago by
Sony
▴ 10
799
votes
167
replies
144k
views
109 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
handbook
updated 3 months ago by
Biostar
2.8k • written 7.5 years ago by
Istvan Albert
100k
0
votes
1
reply
49
views
Functional enrichment analysis for unique gene IDs
RNA-SEQ
updated 2 hours ago by
ATpoint
82k • written 4 hours ago by
Pegasus
▴ 100
0
votes
1
reply
47
views
PCA Visualization error in R - arguments imply differing number of rows
SNPs
PCA
GBS
LINUX
r
updated just now by
zx8754
11k • written 4 hours ago by
Ali
• 0
0
votes
0
replies
45
views
Error in using BioSampleParser tool: subscript out of bounds
R
7 hours ago by
Mohamed Samir
▴ 20
0
votes
1
reply
66
views
GO analysis: p-value range
GO
R
updated 1 hour ago by
marco.barr
▴ 130 • written 8 hours ago by
sooni
▴ 20
1
vote
0
replies
58
views
News:
ICGEB - SLIBTEC NGS Workshop: Won Best Oral Presentation Award
BestTalk
PlatformPresentation
9 hours ago by
Dr.
• 0
0
votes
2
replies
160
views
seqtk subseq in.fastq list.txt > out.fastq not extracting full sequence from input file
subseq
seqtk
extractionproblem
9 hours ago by
KHURRAM SHAHZAD
• 0
0
votes
0
replies
56
views
Challenges of Affymetrix probe IDs for grouping similar genes to calculate their mean
R
Mean
Affymetrix
Probes
Grouping
10 hours ago by
Maryam
• 0
1
vote
6
replies
258
views
Add stats to the plot
R
stats
plotting
just now by
Ghada
• 0
0
votes
4
replies
272
views
scRNA-seq data trained model can be used for predictions on bulk RNA-seq data?
rna-seq
10 hours ago by
Bibi
• 0
1
vote
2
replies
305
views
is there a tool to recover corrupted fastq files
fastq
short-read
updated 11 hours ago by
Tommaso
• 0 • written 12 weeks ago by
pt.taklifi
▴ 60
0
votes
0
replies
71
views
handling bio replicates for chromHMM
replicates
chromHMM
15 hours ago by
Hasan_Daaboul
• 0
0
votes
0
replies
62
views
Tool for within-sample ligand-receptor analysis (bulk RNA-seq) ?
cell-cell
communication
ligand-receptor
self-regulation
15 hours ago by
DGTool
▴ 20
0
votes
1
reply
122
views
geom_bar issue in ggplot2 with xlim()
geom_bar
ggplot2
statistics
R
updated 15 hours ago by
ATpoint
82k • written 17 hours ago by
rj.rezwan
• 0
0
votes
2
replies
269
views
Design for complex RNA-Seq experiment using Deseq2
Model.Matrix
RNA-Seq
Limma
DESeq2
edgeR
18 hours ago by
Ezequiel
• 0
2
votes
0
replies
132
views
Tool:
Sequence alignment on split read event such as inversion, duplication and complex nested events.
minimap
alignment
NGMLR
23 hours ago by
micah
▴ 30
0
votes
0
replies
83
views
problems in installing rDock
rDock
make
Installation
Error
1 day ago by
Rodolfo Adrián
• 0
1
vote
6
replies
1.5k
views
CellRanger output more cells than specified using --force-cells? Why?
scRNA-seq
cellranger
updated 1 day ago by
scideas
▴ 30 • written 8 months ago by
rohitsatyam102
▴ 870
1
vote
2
replies
687
views
Checking chromosome builds for genotyping data
GWAS
Liftover
PLINK
updated 1 day ago by
Muhammad
• 0 • written 2.6 years ago by
mari.johnson
• 0
1
vote
1
reply
302
views
Error in CIBERSORTx ($ operator is invalid for atomic vectors)
CIBERSORTx
cibersort
error
RNA-Seq
deconvolution
updated 1 day ago by
nguyenn6
• 0 • written 3 months ago by
star
▴ 10
0
votes
0
replies
105
views
Buzzled by retrieving metadata on bioprojects for an organism using "rentrez" package
R
updated 1 day ago by
Pierre Lindenbaum
161k • written 1 day ago by
Mohamed Samir
▴ 20
0
votes
0
replies
109
views
Tera-scale metagenomic coassembly tool
co-assembly
Metagenomics
1 day ago by
Moinuddin
• 0
0
votes
1
reply
151
views
Broad and Narrow peaks
ATAC
ChIP
seq
updated 1 day ago by
ATpoint
82k • written 1 day ago by
Jacek
▴ 20
2
votes
1
reply
215
views
RNAseq coverage vs depth for transcript isoform expression?
RNAseq
updated 1 day ago by
Gordon Smyth
★ 7.2k • written 2 days ago by
marineandriot
• 0
0
votes
0
replies
118
views
How can i use ESM-1v ?
VEP
ESM-1v
2 days ago by
Meto
• 0
0
votes
0
replies
125
views
Cell type annotation mixed with other type cells
cell
annotation.
updated 2 days ago by
GenoMax
142k • written 2 days ago by
Long
• 0
0
votes
2
replies
229
views
Trimming tool
Trimmer
tool
updated 2 days ago by
ntsopoul
▴ 60 • written 2 days ago by
GeneC
• 0
0
votes
0
replies
123
views
sci-RNA-seq
cell
single
seurat
sci-rna-seq
counts
2 days ago by
kilcdincer
▴ 10
0
votes
2
replies
234
views
GG Sankey plot
GO
sankey_plot
gglpot
updated 2 days ago by
LauferVA
4.2k • written 2 days ago by
ijarne
• 0
0
votes
0
replies
146
views
genomic region of transcription factor
search
HOMER
motif
2 days ago by
qudrat.nii
▴ 10
1
vote
5
replies
356
views
Reconstruction of locus, order contigs
contigs
cluster
alignment
locus
updated 2 days ago by
dthorbur
★ 2.0k • written 3 days ago by
BATMAN
• 0
0
votes
6
replies
345
views
ComplexHeatmap - How to change fontsize of rowAnnotation
ComplexHeatmap
2 days ago by
hannes.bongartz
• 0
0
votes
0
replies
130
views
Understanding behaviour of SCTransform in Seurat
Seurat
scRNASeq
normalization
updated 2 days ago by
GenoMax
142k • written 2 days ago by
yura.grabovska
▴ 90
4
votes
7
replies
523
views
In one PCA plot, can I calculate the percentage of different factors that contribute to the PCA?
PCA
R
VARIANCE
updated 2 days ago by
marco.barr
▴ 130 • written 4 days ago by
diqixiaoyaoer
▴ 20
1
vote
1
reply
188
views
constructing pangenome through psvcp
psvcp
pangenome
1 day ago by
analyst
▴ 50
0
votes
3
replies
247
views
What marks a De-Novo Genome assembly as FAILED?
nanopore
denovo
illumina
assembly
genome
updated 2 hours ago by
nd48
▴ 20 • written 2 days ago by
Umer
▴ 50
0
votes
4
replies
337
views
How to handle duplicated genes in TCGA data?
TCGA
GDC
mRNA
updated 1 day ago by
txema.heredia
▴ 130 • written 3 days ago by
Ngrin
• 0
4
votes
9
replies
482
views
Faster Needleman-Wunsch rapid global alignment of two sequences?
Needleman-Wunsch
alignment
2 days ago by
Gabriel R.
★ 2.9k
0
votes
2
replies
243
views
How to generate table_annovar from VCF input?
vcf
annovar
updated 3 days ago by
Pierre Lindenbaum
161k • written 3 days ago by
melissachua90
▴ 70
0
votes
0
replies
129
views
How do I quantify the non-coding transcripts that I have generated after using CPAT,PLEK, and BLAST altogether?
transcript
Quantify
non-coding
3 days ago by
Varsha
• 0
0
votes
1
reply
399
views
solution-Transcriptome.cpp:18:Transcriptome: exiting because of *INPUT FILE* error: could not open input file /geneInfo.tab #2142
STAR
updated 2 days ago by
GenoMax
142k • written 3 days ago by
huxiangyulove
• 0
0
votes
0
replies
148
views
Help interpreting KEGG module definitions for converting to NetworkX graph
definition
kegg
module
database
genomics
3 days ago by
O.rka
▴ 720
4
votes
5
replies
4.4k
views
Tool:
GRIDSS: the Genomic Rearrangement IDentification Software Suite
Assembly
Structural-Variation
Variant-Calling
updated 3 days ago by
dario.garvan
▴ 520 • written 7.2 years ago by
d-cameron
★ 2.9k
0
votes
4
replies
338
views
Merge clusters in Seurat UMAP
seurat
umap
3 days ago by
kilcdincer
▴ 10
117,022 results • Page
1 of 2341
Recent Votes
Answer: How to find tandem duplications pattern in a DNA sequence
A: How To Split One Big Sequence File Into Multiple Files With Less Than 1000 Seque
C: Snakemake vs. Nextflow: strengths and weaknesses
Answer: workflow management system : WDL, CWL, Ruffus, SnakeMake, etc
Sequence alignment on split read event such as inversion, duplication and complex nested events.
ICGEB - SLIBTEC NGS Workshop: Won Best Oral Presentation Award
Comment: Add stats to the plot
Recent Locations •
All
Pakistan,
just now
United Kingdom,
just now
UK,
4 minutes ago
India,
5 minutes ago
United Kingdom,
7 minutes ago
Italy,
9 minutes ago
Italy,
11 minutes ago
Recent Awards •
All
Popular Question
to
Raghad
• 0
Scholar
to
Pierre Lindenbaum
161k
Voter
to
Sara
▴ 30
Popular Question
to
carlopecoraro2
★ 2.5k
Popular Question
to
scideas
▴ 30
Popular Question
to
Muhammad
• 0
Popular Question
to
synat.keam
▴ 100
Recent Replies
Comment: Add stats to the plot
by
Ghada
• 0
Thanks, thats really helpful ![enter image description here][1] ![enter image description here][2] [1]: /media/images/0470f3dc-5945-…
Comment: PCA Visualization error in R
by
marco.barr
▴ 130
SNPRelate is an R package that is able to read from VCF files directly and perform PCA and IBD/IBS. See the documentation for details in Bi…
Comment: Why most genes have high padj values
by
ATpoint
82k
788 differential genes is a lot. What is the problem?
Comment: Why most genes have high padj values
by
mnx0723
• 0
Sorry, I made edits.
Comment: Why most genes have high padj values
by
Pierre Lindenbaum
161k
Please do not paste screenshots of plain text content, it is counterproductive. You can copy paste the content directly here (using the cod…
Comment: GO analysis: p-value range
by
marco.barr
▴ 130
Try adding: `scale_y_continuous(breaks=seq(0, max_count, by=0.05))`
Comment: Functional enrichment analysis for unique gene IDs
by
ATpoint
82k
If these genes do not have a symbol then it is utterly unlikely that anyone has looked at their function. I would get their Ensembl IDs and…
Comment: Add stats to the plot
by
marco.barr
▴ 130
The error is likely due to the fact that the structure of your data in data4.ts and data2.ts may not contain the Condition values. The grou…
Comment: How to find identical sequences in genome fasta file (by Python or any possible
by
Pierre Lindenbaum
161k
+ https://www.biostars.org/p/3003/ + https://www.biostars.org/p/9550118/ + https://www.biostars.org/p/158148/
Answer: How to find tandem duplications pattern in a DNA sequence
by
micah
▴ 30
I built a web application can directly find repeat unit and repeat times, try it at http://64.64.240.35:8050/. ![Dot plot][1] ![5 tandem …
Comment: What marks a De-Novo Genome assembly as FAILED?
by
nd48
▴ 20
I would urge you to consider different approaches for benchmarking before deciding on one. In particular, I found that assembling long read…
Comment: BiomartException: Query ERROR for existing dataset in BioMart
by
Luqman
• 0
I am using *pybiomart* which has Server inplace of BiomartServer, I used that as per above but still getting the same error. Also, when I a…
Comment: Blastn, need help to increase speed
by
m13113153781
• 0
mmseq2 is indeed a good acceleration solution, but its index files require ~ 6 T space....
Answer: seqtk subseq in.fastq list.txt > out.fastq not extracting full sequence from
by
KHURRAM SHAHZAD
• 0
Thank you it works
Answer: Add stats to the plot
by
Ghada
• 0
I think this is what caused the error. we do not have group 1 and 2 in the statistical test results???? ![enter image description here][…
Traffic: 1938 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6