updated 35 minutes ago by
Gordon Smyth
★
7.1k
•
written 4 hours ago by
SHN
▴
40
0
votes
1
reply
46
views
1
vote
1
reply
935
views
updated 1 hour ago by
lcordeiro
▴
40
•
written 14 months ago by
Zhenyu Zhang
★
1.2k
0
votes
1
reply
149
views
updated 2 hours ago by
chrchang523
10k
•
written 3 days ago by
8armed
•
0
0
votes
5
replies
184
views
updated 2 hours ago by
chrchang523
10k
•
written 11 hours ago by
curious
▴
750
0
votes
0
replies
35
views
4 hours ago by
deepak180001
•
0
795
votes
167
replies
142k
views
109 follow
updated 3 months ago by
Biostar
2.7k
•
written 7.4 years ago by
Istvan Albert
100k
0
votes
1
reply
78
views
0
votes
0
replies
45
views
6 hours ago by
Ximena
•
0
0
votes
0
replies
41
views
6 hours ago by
Valentina
•
0
0
votes
6
replies
258
views
0
votes
1
reply
75
views
updated 7 hours ago by
swbarnes2
14k
•
written 7 hours ago by
kalavattam
▴
190
0
votes
1
reply
76
views
0
votes
0
replies
59
views
0
votes
0
replies
55
views
10 hours ago by
Javier
•
0
0
votes
0
replies
48
views
0
votes
0
replies
55
views
0
votes
0
replies
56
views
0
votes
2
replies
112
views
updated 10 hours ago by
GenoMax
142k
•
written 12 hours ago by
ahmad.sajad4541
•
0
0
votes
0
replies
52
views
12 hours ago by
marco.barr
▴
90
0
votes
0
replies
57
views
2
votes
2
replies
131
views
updated 13 hours ago by
t.montserrat.ayuso
▴
10
•
written 16 hours ago by
carolofharvest
▴
30
9
votes
9
replies
453
views
updated 10 hours ago by
dsull
★
6.0k
•
written 4 days ago by
carolofharvest
▴
30
0
votes
1
reply
97
views
0
votes
0
replies
67
views
1
vote
1
reply
90
views
updated 16 hours ago by
ATpoint
82k
•
written 17 hours ago by
adi.gershon1
•
0
3
votes
5
replies
184
views
0
votes
5
replies
247
views
6 follow
updated 18 hours ago by
b.contreras.moreira
▴
180
•
written 1 day ago by
JH
•
0
1
vote
3
replies
200
views
0
votes
0
replies
68
views
19 hours ago by
Amos Bairoch
▴
120
1
vote
3
replies
178
views
0
votes
0
replies
84
views
0
votes
2
replies
673
views
updated 23 hours ago by
clairechung112
•
0
•
written 23 months ago by
amahdi779
•
0
1
vote
3
replies
186
views
updated 1 day ago by
Alex Reynolds
35k
•
written 1 day ago by
SJP
•
0
0
votes
0
replies
80
views
0
votes
1
reply
128
views
1
vote
3
replies
176
views
updated 1 day ago by
jared.andrews07
★
16k
•
written 1 day ago by
yvonneh
▴
10
3
votes
5
replies
233
views
3
votes
8
replies
6.5k
views
7 follow
updated 1 day ago by
Sd
•
0
•
written 5.1 years ago by
Nicolas Rosewick
11k
0
votes
2
replies
139
views
0
votes
1
reply
166
views
updated 23 hours ago by
Chris Dean
▴
390
•
written 1 day ago by
sovrappensiero
▴
90
1
vote
2
replies
189
views
2
votes
6
replies
294
views
0
votes
1
reply
484
views
0
votes
1
reply
125
views
updated 1 day ago by
Mensur Dlakic
★
27k
•
written 1 day ago by
Arun Sai Kumar
•
0
1
vote
1
reply
140
views
1
vote
1
reply
146
views
updated 1 day ago by
jared.andrews07
★
16k
•
written 1 day ago by
Oburah
•
0
0
votes
6
replies
257
views
5
votes
5
replies
233
views
updated 1 day ago by
atharvakarkare14
▴
30
•
written 1 day ago by
Begonia_pavonina
▴
150
1
vote
7
replies
420
views
3
votes
3
replies
287
views
Recent Votes
Recent Locations •
All
Syracuse, NY, United States, just now
United States, 7 minutes ago
United States, 10 minutes ago
Russia, 12 minutes ago
United States, 19 minutes ago
Australia, 22 minutes ago
Canada, 27 minutes ago
Recent Awards •
All
Popular Question to
SHN
▴
40
Popular Question to
Rob
▴
170
Popular Question to
curious
▴
750
Popular Question to
M.
▴
30
Student to
carolofharvest
▴
30
Commentator to
e.r.zakiev
▴
210
Recent Replies
Answer: Design matrix Differential expression analysis
by
Gordon Smyth
★
7.1k
The expression levels do not change but the way that you have parametrized the expression levels does change.
The two design matrices give…
Comment: The GDC Legacy Archive is retiring soon.
by
lcordeiro
▴
40
Hi Zhenyu, do you happen to know how I can download metadata for some of the legacy files? I downloaded several IDATs from the legacy data …
Answer: Force PLINK2 to neglect chrX as the sex chromosome
by
chrchang523
10k
(cross-posted from https://groups.google.com/g/plink2-users/c/Qphx_6BpPII )
You need to use --chr-set, not --allow-extra-chr, to specify…
Answer: Easy way to find out which allele is minor allele from bed file?
by
chrchang523
10k
This question does not make sense. If you care about allele-order "information [being] lost in downstream applications", REF/ALT is the ob…
Answer: visualize GSEA
by
bk11
★
2.4k
I have made some edits in your code basically changing the position of text and commented out the line `data$text_pos <- ifelse(data$NES > …
Comment: Differential Expression Analysis using DESeq2 in R
by
swbarnes2
14k
Pictures of code are useless. You were told to paste the code and use the 0101 button. Can you explain why you decided not to do that?
If…
Comment: Differential Expression Analysis using DESeq2 in R
by
Erina
•
0
![Here is the code I am using for the analysis][1]
[1]: /media/images/8a511904-6ae8-47f5-b647-ee15b02b
Answer: Clarification regarding SAM flags "mate reverse strand" (flag 16/0x10) and "read
by
swbarnes2
14k
In paired end sequencing, every read has a mate, and the flags all together tell you not only what is up with the read you are looking at, …
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
by
Mbofire
•
0
I need assistance don't know what to do next after signing up
Comment: Easy way to find out which allele is minor allele from bed file?
by
curious
▴
750
According to the link:
"When *generating* such filesets, PLINK 1.x defaults to swapping the alleles whenever A1's frequency is above (not …
Comment: TaxID mapping file
by
GenoMax
142k
nodesDB file should have been installed if you had used "Install" script for `blobtools` according to : https://blobtools.readme.io/docs/ta…
Comment: Parametric or non-parametric tests for qPCR significance testing between treatme
by
e.r.zakiev
▴
210
obviously if the values are really sampled from a (quasi) normally-distributed values, then n doesn't matter, he could use t-test even with…
Comment: Converting CRAM to FastQ
by
GenoMax
142k
You can use any reference that you like at this point. Since you are planning to use GATK, you can get their version from the resource bund…
Comment: Converting CRAM to FastQ
by
Maverick
▴
10
![enter image description here][1]I was able to get my fastq files. I can see that my reference files are cached in a hts-ref directory but…
Traffic: 1354 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6