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1,000 results • Page
4 of 20
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
188
views
scRNA Cluster frequency
CV
PCA
scRNA
Cluster-Frequency
6 days ago by
Nitin
• 0
1
vote
5
replies
557
views
Duplicate marking, read names, and the SRA
SRA
MarkDuplicates
updated 6 days ago by
GenoMax
141k • written 6 days ago by
Luka
• 0
0
votes
0
replies
188
views
absolute path for symbolic links in Snakefile
Snakemake
updated 6 days ago by
Ram
43k • written 6 days ago by
yifangt86
▴ 60
0
votes
0
replies
181
views
Chemical structure validation
structure
cap
validation
metabolite
6 days ago by
Rodolfo Adrián
• 0
3
votes
8
replies
1.2k
views
Cellranger count error: Input FASTQ file ended prematurely
scRNA-seq
Cellranger
STARsolo
10X
updated 5 days ago by
swbarnes2
14k • written 9 months ago by
bp22
▴ 80
0
votes
1
reply
260
views
Downloading the raw microarray data from GEO
.gpr
microarray
.CEL
updated 6 days ago by
GenoMax
141k • written 6 days ago by
bioyas
▴ 10
0
votes
0
replies
204
views
Copy number variation plot
Copy-number-variation
genomics
updated 6 days ago by
Ram
43k • written 6 days ago by
Emmi
• 0
1
vote
5
replies
695
views
RNA seq differential expression analysis
RNA-seq
normalization
updated 6 days ago by
BioinfGuru
★ 1.7k • written 7 days ago by
rrehimi
• 0
0
votes
0
replies
178
views
SNP calling with ANGSD and ngsLD. How many SNPs?
lcwgs
ngsTools
ANGSD
genomics
6 days ago by
DanielEB_fisk
▴ 20
0
votes
1
reply
281
views
Could you please assist in identifying this cluster?
single-cell
updated 6 days ago by
Ram
43k • written 6 days ago by
Kazo
• 0
4
votes
9
replies
2.6k
views
Tool:
CANEapp, a user-friendly application for automated next generation transcriptomic data analysis
RNA-Seq
written 8.2 years ago by
dvelmeshev
• 0
2
votes
7
replies
5.2k
views
6 follow
Memory usage of picard Samsort
Picard
SortSam
updated 6 days ago by
ATpoint
82k • written 7.2 years ago by
boymin2020
▴ 80
5
votes
13
replies
1.1k
views
Tutorial:
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
R
Ubuntu
Linux
Bioconductor
Rstudio
updated 5 days ago by
ATpoint
82k • written 6 days ago by
BioinfGuru
★ 1.7k
1
vote
1
reply
410
views
Plink merge errors.
cygwin64
bed
PLINK
6 days ago by
Dinmukhamed
• 0
0
votes
0
replies
195
views
Conversion to tree format
PLINK
bed
Figtree
SplitsTree
updated 6 days ago by
Ram
43k • written 6 days ago by
Dinmukhamed
• 0
0
votes
0
replies
194
views
miRDeep2: How to get the read counts
mirdeep2
6 days ago by
Atul K.
• 0
3
votes
4
replies
652
views
Mapping cDNA sequence of a single gene to a genome not hosted at UCSC server (without Blat)
mapping
3 days ago by
rahu
• 0
0
votes
0
replies
201
views
Lncipedia GTF file error
Proteomics
updated 6 days ago by
Ram
43k • written 6 days ago by
atharvakarkare14
▴ 10
7
votes
3
replies
2.8k
views
Tutorial:
Prediction of Ribosomal RNA Genes Using RNAmmer Software
Annotation
rRNA
RNAmmer
Genome
updated 6 days ago by
colindaven
6.4k • written 15 months ago by
Dr.Animo
▴ 130
3
votes
3
replies
468
views
Free/open source 23andme-like analysis
SNPs
genomics
NGS
VCF
updated 5 days ago by
swbarnes2
14k • written 7 days ago by
joe
▴ 510
0
votes
2
replies
534
views
How to get the reference panel for UKBB
UKBB
GWAS
clump
7 days ago by
航太郎
• 0
11
votes
12
replies
939
views
Downloaded pdb's on rcsb.org
rcsb
pdb
updated 7 days ago by
Ram
43k • written 7 days ago by
iamsmor
• 0
0
votes
0
replies
213
views
create genewise sync file in popoolation
popoolation
updated 7 days ago by
GenoMax
141k • written 7 days ago by
N.Y.Wiyana-Hewage
• 0
0
votes
2
replies
372
views
error in coding potential calculator CPC2
cpc
CPC2
coding-potential
7 days ago by
Ashok
• 0
0
votes
2
replies
410
views
miRNAs quantification using mirdeep2 tool
differential-expression
mirdeep2
miRNA
6 days ago by
Ashok
• 0
0
votes
0
replies
212
views
Variant Generation Using Longshot
long-reads
variant-calling
ONT
minion
longshot
updated 7 days ago by
Ram
43k • written 7 days ago by
samuelkalandarov2002
▴ 10
1
vote
1
reply
368
views
Problem with Mirdeep2 and Randfold output
mirdeep2
Randfold
7 days ago by
otieno43
▴ 30
0
votes
2
replies
420
views
QC exclusion of A/T or G/C alleles to avoid strand issues
quality-control
SNV
QC
SNP
6 days ago by
_quantum_girl_
▴ 10
0
votes
0
replies
202
views
traying to make a maf from an already annotated vcf
vcf
vcf2maf
maf
maftools
VEP
3 days ago by
Javier
• 0
1
vote
4
replies
681
views
What happened to Tombo Re-squiggle
Tombo
resquiggle
ONT
updated 7 days ago by
Ram
43k • written 3 months ago by
turcoa1
• 0
0
votes
0
replies
176
views
Pruning with plink finds a majority of SNPs in very high LD
LD
SNP
plink
pruning
7 days ago by
enferdeflame
• 0
1
vote
1
reply
413
views
Difference when using difference number of pathways score to compare between 3 groups
GSVA
Limma
updated 5 days ago by
Gordon Smyth
★ 7.0k • written 7 days ago by
Chris
▴ 260
0
votes
0
replies
188
views
News:
Online course: Meta-analysis in R
Meta-Analysis
Statistics
R
updated 7 days ago by
Ram
43k • written 7 days ago by
carlopecoraro2
★ 2.5k
3
votes
9
replies
791
views
How can I retrieve wheat lysine non-acetylated sequences from the UniProt database?
UniProt
updated 7 days ago by
Elisabeth Gasteiger
★ 2.4k • written 7 days ago by
Jacky
• 0
0
votes
1
reply
266
views
10x VDJ (TCR/BCR) BAM to fastq
TCR
VDJ
BCR
10x
updated 7 days ago by
GenoMax
141k • written 7 days ago by
predeus
★ 1.9k
0
votes
1
reply
265
views
DEseq2
RNA-seq
DESeq2
updated 7 days ago by
Ram
43k • written 7 days ago by
rrehimi
• 0
0
votes
0
replies
173
views
News:
Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo
Individual-Based-Models
Agent-Based-Models
updated 7 days ago by
Ram
43k • written 7 days ago by
carlopecoraro2
★ 2.5k
4
votes
2
replies
316
views
Assume "yes" as the answer to any prompts with bioconda
docker
container
bioconda
updated 7 days ago by
Juke34
8.5k • written 7 days ago by
njornet
▴ 20
1
vote
0
replies
175
views
Tutorial:
DNA Methylation: Sequencing Techniques
WGBS
RRBS
7 days ago by
Novogene
▴ 420
0
votes
1
reply
400
views
How to add rowLinks, rowTree in SummarizedExperiment manually.
phylogenetic-tree
microbiome
updated 7 days ago by
Ram
43k • written 19 months ago by
Muhammad
• 0
3
votes
3
replies
501
views
Korean human genome reference file
GWAS
reference
imputation
7 days ago by
SeoGyun
• 0
0
votes
0
replies
157
views
How can I obtain the tissue or sample name alongside the Tau score in tspex?
tau-score
tspex
updated 7 days ago by
Ram
43k • written 7 days ago by
bioinfo223
▴ 10
0
votes
0
replies
175
views
How to root an unrooted tree with a known root tree?
phylogenetics
rooting
R
7 days ago by
P.
• 0
0
votes
0
replies
166
views
Issues with SnpEff Assuming Circular Chromosomes in Eukaryotic Genome Analysis
snpEff
7 days ago by
ekirsch
• 0
1
vote
1
reply
398
views
Load a full GFF3 into annotation track using arrow (Apollo)
arrow
python-apollo
Apollo
6 days ago by
renan.igor
• 0
2
votes
1
reply
260
views
Pediococcus acidilactici sequence analysis
BLAST
Gene-Ontology
updated 7 days ago by
Ram
43k • written 8 days ago by
anasjamshed
▴ 120
3
votes
1
reply
596
views
What is the normalization status of metabric data?
metabric
normalization
microarray
cbioportal
updated 8 days ago by
etiennedanis
▴ 20 • written 19 months ago by
DareDevil
★ 4.3k
0
votes
0
replies
174
views
filter the most significant ligand and receptors in netVisual_bubble in cell chat
cellchat
8 days ago by
synat.keam
▴ 100
0
votes
1
reply
267
views
assembly using CCS, CLR, CCS_CLR sequences together?
assembly
updated 8 days ago by
GenoMax
141k • written 8 days ago by
ycts
• 0
5
votes
4
replies
621
views
DEG analysis of RNA-seq data across multiple tissues and two conditions
RNA-seq
EdgeR
DEGs
DESeq2
7 days ago by
BioinfGuru
★ 1.7k
1,000 results • Page
4 of 20
Recent Votes
Answer: Seurat merge and batch correction
Comment: How to convert plink files to Hapmap Format
Comment: How to convert plink files to Hapmap Format
Comment: How to convert plink files to Hapmap Format
Comment: How to convert plink files to Hapmap Format
Comment: How to convert plink files to Hapmap Format
Answer: Missing protein (VEGF-A) in String db
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Comment: Missing protein (VEGF-A) in String db
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Thank you for replying here; this helped me figure out why MAPK10 was missing from my results. It was also marked as a pseudogene in the En…
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These are the first lines of the output: (Please is it normal to have NA in the P value column ?) CHR …
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So I used the barcodes that I created (combos of positions 1-10 and 11-20) and I obtained similar alignment stats as the paper I pulled the…
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The company probably had you share your run with someone who needed the extra bases. So you get the extra bases free. Just use them unle…
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Thank you, the `csvtk spread` is super useful. I usually import into R using `lapply` then `Reduce` using `merge` but this might be easier.
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Open a new question, with details.
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