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935 results • Page
2 of 19
Sort: Rank
Rank
Views
Votes
Replies
0
votes
2
replies
204
views
Error in plotting PCA plot in seurat
PCA
single-cell
seurat
scRNA
RNA
updated 1 day ago by
Ram
43k • written 2 days ago by
Sumeet
• 0
0
votes
0
replies
113
views
News:
Online course: Introduction to Deep Learning
Python
Deep-Learning
Convolutional-Neural-Network
Machine-Learning
updated 1 day ago by
Ram
43k • written 1 day ago by
carlopecoraro2
★ 2.5k
4
votes
5
replies
3.4k
views
How to compare compare two Sam files to check mapping
alignment
updated 1 day ago by
DavidStreid
▴ 90 • written 6.4 years ago by
madhu.9124
▴ 60
0
votes
2
replies
146
views
How/where can I get fungal mitogenome data for analysis?
fungal
mitogenome
updated 1 day ago by
GenoMax
142k • written 1 day ago by
madders73
• 0
4
votes
2
replies
246
views
How can I analyze normalized expression data?
DEseq2
RNA-seq
1 day ago by
mnx0723
• 0
3
votes
4
replies
4.0k
views
FarmCPU - how to explain the reported 'effect'?
gwas
updated 1 day ago by
chloek88
• 0 • written 5.5 years ago by
Philipp Bayer
8.4k
2
votes
4
replies
281
views
RNA seq analysis
DESeq
RNA-seq
updated 17 hours ago by
s.ghazala
• 0 • written 1 day ago by
prifa
▴ 10
10
votes
3
replies
293
views
TFs and Gene databases
Transcription-factor
Target
Regulatory-Networks
updated 2 days ago by
b.contreras.moreira
▴ 180 • written 2 days ago by
ijarne
• 0
0
votes
0
replies
136
views
Chance for trained without experience
bio
updated 2 days ago by
ATpoint
82k • written 2 days ago by
shehab
• 0
1
vote
2
replies
175
views
How do I change the title font size in ViolinPlot (Seurat)
Seurat
Violin-Plot
ggplot2
patchwork
2 days ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
112
views
Xenium multi sample data
batch
annotation
cell
Xenium
effect
2 days ago by
Omics data mining
▴ 260
0
votes
2
replies
161
views
Phasing a mixture of two individuals' DNA with long reads
long-reads
phasing
2 days ago by
njornet
▴ 20
0
votes
2
replies
187
views
Exploring Diet Effects in Single-Cell RNA Sequencing
batch_effect
scRNA
seurat
integration
updated 1 day ago by
Adam
▴ 30 • written 2 days ago by
Darya
• 0
0
votes
5
replies
223
views
Percentage coverage of reference genome by de novo genome
SAMtools
BWA
alignment
ddRAD
updated 1 day ago by
Joe
21k • written 2 days ago by
Lemonhope
• 0
0
votes
0
replies
155
views
Why does my Hi-C contact map show large regions making little to no contact?
BWA-MEM2
Hi-C
PretextMap
1 day ago by
Winter
• 0
0
votes
5
replies
271
views
A question about reference genome for creating the consensus sequence
fasta
fa
cram
genome
1 day ago by
me
• 0
2
votes
1
reply
125
views
java out of memory error through beagle for imutation
beagle
java.out.of.memory
imputation
2 days ago by
analyst
▴ 50
0
votes
0
replies
84
views
Generating .bed file and .map file for polyploid vcf file through plink
bed
polyploid
map
plink
2 days ago by
analyst
▴ 50
0
votes
0
replies
81
views
Blog:
Introduction to The Complete Sequence of a Human Genome
biotech
2 days ago by
usa.cd.genomics
• 0
0
votes
0
replies
87
views
Blog:
Overview of Nanopore Sequencing
biotech
2 days ago by
usa.cd.genomics
• 0
0
votes
0
replies
98
views
meffil.snp.concordance
meffil
methylation
snp_concordance
2 days ago by
kyj222637
• 0
0
votes
1
reply
139
views
PseudobulkExpression.Seurat error
Seurat
pseudo-bulk
updated 1 day ago by
Bastien Hervé
5.3k • written 2 days ago by
sooni
▴ 20
1
vote
5
replies
403
views
HCL database download
HCL
updated 2 days ago by
Ram
43k • written 6 days ago by
sooni
▴ 20
0
votes
1
reply
243
views
barcode of TCR-sequencing
barcode
updated 2 days ago by
mizraelson
▴ 60 • written 9 days ago by
yueli7
▴ 250
0
votes
3
replies
217
views
STAR aligner error
RNA-seq
STAR
slurm
updated 1 day ago by
Ram
43k • written 2 days ago by
M.
▴ 30
0
votes
0
replies
93
views
monocle 3-- Could not get node in small cluster
monocle3
2 days ago by
synat.keam
▴ 100
0
votes
2
replies
189
views
Correlating Bulk Differential Expression with quantitative
Differential-Expression
DESeq2
1 day ago by
Nicholas
• 0
1
vote
4
replies
358
views
Understanding STAR output (Aligned.out.sam file)
STAR
paired-end
read
2 days ago by
heelpPlease
• 0
0
votes
7
replies
453
views
Applying the metacell2 algorithm using python
python
single-cell
scanpy
metacell2
updated 1 day ago by
Wayne
★ 2.0k • written 3 days ago by
JACKY
▴ 140
0
votes
0
replies
109
views
News:
Online course. -Time series analysis and Forecasting in R
Time-Series
Forecasting
R
Stastics
2 days ago by
carlopecoraro2
★ 2.5k
0
votes
2
replies
458
views
HLA-HD tool for genomic imputation
genomics
imputation
bash
updated 2 days ago by
Javier
• 0 • written 3 months ago by
fra.r.silvestro
▴ 10
0
votes
1
reply
208
views
ERROR: Duplicate entry "..." in sam header; samtools view: failed to add PG line to the header
sort.
SAMtools.
BAM.
SAM.
updated 2 days ago by
GenoMax
142k • written 2 days ago by
Sony
▴ 10
5
votes
5
replies
265
views
Error in dimnames(x) <- dn : length of 'dimnames' [2] not equal to array extent
EGSEA
2 days ago by
Chris
▴ 280
0
votes
2
replies
201
views
Differentail gene expression results
differential
expression
gene
rna-seq
Deseq2
updated 1 day ago by
swbarnes2
14k • written 2 days ago by
ahmad.sajad4541
• 0
1
vote
8
replies
247
views
UMI-Tools knee-method has great influence on the results of white list
single-cell
whitelist
UMI
RNA
UMI-Tools
55 minutes ago by
Assa Yeroslaviz
★ 1.8k
1
vote
1
reply
156
views
student
epitranscriptomics
updated 2 days ago by
ATpoint
82k • written 3 days ago by
useriwa
• 0
0
votes
0
replies
106
views
Imputation of missing genotypes
panel
beagle
imputation
3 days ago by
analyst
▴ 50
0
votes
3
replies
165
views
trying to count a pattern in my fastq file using bbduk
java
bbduk
bbmap
fastq
updated 2 days ago by
GenoMax
142k • written 3 days ago by
Assa Yeroslaviz
★ 1.8k
7
votes
1
reply
154
views
Tutorial:
removeBatchEffect explained using base R linear models
limma
effects
batch
removebatcheffects
updated 3 days ago by
dariober
14k • written 3 days ago by
nhaus
▴ 360
2
votes
2
replies
165
views
Is therer any suggestions on mapping rate of WGBS data?
mapping
read
alignment
WGBS
2 days ago by
Zeng Jingyu
▴ 60
1
vote
2
replies
252
views
News:
We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
cell-clustering
Spatial-transcriptomics
updated 3 days ago by
Weiwen
• 0 • written 4 days ago by
MICOS
▴ 10
0
votes
3
replies
180
views
Correlation Analysis
statistics
methylation
NGS
expression
updated 1 hour ago by
manaswwm
▴ 510 • written 3 days ago by
Researcher
▴ 30
1
vote
2
replies
167
views
Repeated testing/data mining in RNA Seq
repeated
RNA-Seq
mining
testing
data
2 days ago by
robert.flynn.21
• 0
1
vote
1
reply
208
views
Tool:
Converting Nebula Genomics Data to 23andMe Format
23andMe
Nebula
updated 2 days ago by
Michael
54k • written 3 days ago by
Guillermo
• 0
1
vote
5
replies
319
views
Comparative Analysis of Algorithms for Implementing the FM-Index: Correctness, Complexity, and Use Cases
fmindex
bwt
updated 2 days ago by
Michael
54k • written 3 days ago by
qwertyuiop26
• 0
0
votes
1
reply
164
views
What is the proper way to identify the cell types of scRNAseq cluster?
scRNAseq
updated 3 days ago by
ATpoint
82k • written 3 days ago by
MAPK2
▴ 40
0
votes
2
replies
231
views
Job:
Bioinformatics Analyst - Laboratory Medicine and Pathology
job
updated 3 days ago by
Xiaofen
• 0 • written 3 days ago by
toddknutson
▴ 60
0
votes
1
reply
130
views
Seeking Guidance on Identifying Mutations in DARs from ATAC Data in Cancer Genomes
Genomics
Bioinformatics
ATACseq
CancerResearch
updated 3 days ago by
LChart
3.9k • written 3 days ago by
David
• 0
1
vote
2
replies
163
views
Where to get the following bed file?
WES
bed
reference
file
updated 3 days ago by
GenoMax
142k • written 3 days ago by
wyuan37
• 0
0
votes
0
replies
108
views
Get Paired TCRa/b from MIXCR
python
r
mixcr
tcr_seq
3 days ago by
Scott McKay
▴ 30
935 results • Page
2 of 19
Recent Votes
Truncated metadata file report from ENA Portal API
Comment: Truncated metadata file report from ENA Portal API
A: Download data from TCGA
A: Do I need to normalize level 3 TCGA data?
A: Seqlogo and Homer
A: hmmsearch vs hmmscan - e-value, speed, & output differences?
hmmsearch vs hmmscan - e-value, speed, & output differences?
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Popular Question
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maria.soler
• 0
Popular Question
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melissachua90
▴ 70
Popular Question
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Lila M
★ 1.2k
Popular Question
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Amr
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rpolicastro
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singcell
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Gordon Smyth
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Recent Replies
Comment: Truncated metadata file report from ENA Portal API
by
GenoMax
142k
While there is no timeout by default on the `get` operation, you may want to set a higher value and see if that helps, since there is a lar…
Comment: Truncated metadata file report from ENA Portal API
by
Giulia
• 0
The " missing is because of a copy-paste error in the post.. I know wget but my tool is entirely in python. I really don't understand why i…
Comment: UMI-Tools knee-method has great influence on the results of white list
by
Assa Yeroslaviz
★ 1.8k
and if I use the command as such: ``` umi_tools extract --extract-method=regex --error-correct-cell \ --bc-pattern2='(?P…
Comment: UMI-Tools knee-method has great influence on the results of white list
by
i.sudbery
19k
No, UMI-tools won't work this out automatically, you'll need to either switch read1 and read2 or use the new `--read2-only` which is curren…
Comment: Correlation Analysis
by
manaswwm
▴ 510
If your *gene_corr* data frame contains one gene instead of all genes, then the correlation would be per gene. If your *gene_corr* data fra…
Comment: UMI-Tools knee-method has great influence on the results of white list
by
Assa Yeroslaviz
★ 1.8k
I think I might know my problem. The barcodes are in this case on read2 and not on read1. Does umi-tools recognise it automatically, or do …
Comment: Microbial Signal Transduction Database
by
zx8754
11k
Did you try https://mib-jouline-db.asc.ohio-state.edu/#introduction ? >The database can also be accessed via the API. The same API points …
Comment: CNVKIT - unable to produce scatter and diagram pdfs
by
Anitha
• 0
Thank you for the information.
Comment: LncRNA Nomenclature
by
jain72744
▴ 10
My data is based on gene counts and the respective gene IDs are given so I should work with ENSGs? lncRNA_transcripts <- getBM(attributes …
Answer: DESeq2 error
by
ATpoint
82k
At least one group needs replication. That is the short answer. For a longer answer add details on experimental design.
Comment: When should I use R-MarkDown over R-Script ?
by
ATpoint
82k
Why particular question? Rmarkdown is a composite of markdown and code. You can nicely separate free text, explanation, comments etc. from…
Comment: LncRNA Nomenclature
by
ATpoint
82k
RNA-seq is typically analyzed on gene rather than transcript level. Are your counts gene or transcript?
Comment: EdgeR - relationship between logFC and coefficients
by
gBioStar5
▴ 10
Thanks a lot, this was very helpful. I'll keep that in mind.
Answer: EdgeR - relationship between logFC and coefficients
by
Gordon Smyth
★ 7.1k
Results presented by topTags() are on the log2 scale. Coefficients stored internally in the DGELRT object are on the loge scale. If you con…
Answer: Importing a fastq file
by
size_t
▴ 120
run command `explorer.exe .` in wsl terminal, and then drag file to folder
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