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523 results • Page
2 of 11
Sort: Votes
Rank
Views
Votes
Replies
2
votes
2
replies
259
views
How to row normalize a matrixplot?
scRNA-seq
RNA-seq
single-cell
scanpy
10 days ago by
bioinfo
▴ 150
2
votes
6
replies
632
views
Overlapping and merging ChIP-seq peaks
MACS2
HOMER
ChIP-seq
peak-calling
updated 23 days ago by
Ram
43k • written 4 months ago by
zea
• 0
2
votes
5
replies
1.6k
views
Adding functional annotation and meta-data of MAKER/BRAKER GFF
metadata
functional-annotation
BRAKER
MAKER
updated 24 days ago by
andorjkiss
▴ 40 • written 15 months ago by
javanokendo
▴ 60
2
votes
0
replies
203
views
What are good Python models/packages to predict small molecula (SMILES) binding to proteins ?
SMILES
10 days ago by
Alexander
▴ 220
2
votes
7
replies
812
views
Removing duplicates
duplicates
ONT
minimap2
updated 7 days ago by
joe
▴ 510 • written 8 days ago by
quentinperriere
• 0
2
votes
3
replies
1.1k
views
Polishing PACBIO corrected assembly using ONT and ILLUMINA data (.fastq)
fasta
Nanopore
long-read
fastq
updated 20 days ago by
Ram
43k • written 2.8 years ago by
K
▴ 10
2
votes
2
replies
259
views
Removing adapters in all the RNAseq samples regardless if they have or not, is it correct?
fastqc
trimming
adapters
cutadapt
RNAseq
updated 22 days ago by
dsull
★ 5.8k • written 22 days ago by
ev97
▴ 20
2
votes
2
replies
264
views
singlecell annotation
scRNA-seq
annotation
29 days ago by
kayah
• 0
2
votes
18
replies
1.6k
views
error when running phg create-maf-vcf to build a built practical haplotype graph (v2)
pangenome
phg_v2
plants
PHG
23 days ago by
b.contreras.moreira
▴ 170
2
votes
4
replies
292
views
Addmetadata to seurat obj
seurat
15 days ago by
synat.keam
▴ 100
2
votes
5
replies
669
views
samtools mpileup taking too long
Bam
samtools
sam
alignment
updated 20 days ago by
Ram
43k • written 6 weeks ago by
K
• 0
2
votes
4
replies
1.4k
views
How to fix Error in dat[, batch == batch_level] : (subscript) logical subscript too long when removing batch effects
microarray
combat
batch-effect
median-normalization
updated 7 days ago by
Ram
43k • written 18 months ago by
Dominique
• 0
2
votes
2
replies
273
views
DepMap: siRNA and CRSIPR discrepancy
DepMap
updated 14 days ago by
ATpoint
82k • written 14 days ago by
Shicheng Guo
★ 9.4k
2
votes
9
replies
815
views
TCGA2STAT Error: Firehose connection
FIREHOSE
TCGA
updated 2 days ago by
LauferVA
4.2k • written 6 months ago by
Gnana
• 0
2
votes
3
replies
254
views
P-value Threshold Consideration in Multi-Sample RNA-Seq Experiment
statistics
RNA-Seq
p-value
updated 23 days ago by
Ram
43k • written 23 days ago by
Netanel
• 0
2
votes
4
replies
255
views
interpretartion of a vcf file
calling
genotype
ONT
variant
diploid
1 day ago by
samuelkalandarov2002
▴ 10
2
votes
5
replies
683
views
what's the genomic location and name of gene responsible for orange and black patches in calico cats
genomes
updated 5 days ago by
Jesse
▴ 740 • written 6 days ago by
Ann
★ 2.4k
2
votes
0
replies
1.8k
views
ComBat-seq adjustment of batch effects
RNA-Seq
ComBat-seq
SVA
edgeR
batch-effect
updated 8 days ago by
Ram
43k • written 3.4 years ago by
chatterjee.arumoy
▴ 50
1
vote
2
replies
1.7k
views
Batch effects and MDSPlot in limma
limma
Batch-effect
MDS
Galaxy
updated 9 days ago by
Ram
43k • written 4.8 years ago by
sonayuv
• 0
1
vote
2
replies
230
views
permutation test in edgeR
rna-seq
edgeR
updated 3 days ago by
Gordon Smyth
★ 7.0k • written 17 days ago by
Netanel
• 0
1
vote
0
replies
538
views
The majority of the sequences in Trinity ID do not start from start codons. Can the sequences still be used for primer design and validation?
Primers
TRINITY
5 days ago by
mathavanbioinfo
▴ 90
1
vote
2
replies
208
views
Flow Cytometry Data Analysis by Seurat
Seurat
updated 28 days ago by
Ram
43k • written 28 days ago by
gdfsnkfns
• 0
1
vote
4
replies
388
views
what is the normal range of htseq-count output for homo sapiens RNA-Seq
Transcriptomics
htseq-count
RNA-Seq
NGS
hisat2
updated 12 days ago by
BioinfGuru
★ 1.7k • written 13 days ago by
Morteza
• 0
1
vote
5
replies
257
views
Downsampling fastq file
downsample
fastq
updated 3 days ago by
Ram
43k • written 3 days ago by
marco.barr
▴ 80
1
vote
1
reply
2.7k
views
Plotting a PCA Plot from SVASeq results
pca
ruvseq
sva
svaseq
batch-effect
updated 8 days ago by
Ram
43k • written 6.2 years ago by
jjrin
▴ 40
1
vote
1
reply
462
views
PLINK multivariable GLM output: p-value without BETA and SE
linear-model
glm
plink
updated 17 days ago by
chrchang523
10k • written 17 days ago by
dsbusiness135
▴ 10
1
vote
3
replies
6.1k
views
Error for converting from gene symbol to Entrez IDs
Entrez-ID
org.Dr.eg.db
updated 9 days ago by
Ram
43k • written 5.5 years ago by
modarzi
▴ 170
1
vote
1
reply
413
views
Difference when using difference number of pathways score to compare between 3 groups
GSVA
Limma
updated 5 days ago by
Gordon Smyth
★ 7.0k • written 7 days ago by
Chris
▴ 260
1
vote
2
replies
287
views
Tumour purity and ploidy estimation
Copy-number
Whole-exome-sequencing
9 days ago by
bp22
▴ 80
1
vote
1
reply
175
views
Failed to download data from EBI with ascp
EBI
aspera
updated 14 days ago by
GenoMax
141k • written 14 days ago by
biock
▴ 60
1
vote
1
reply
223
views
Retrieve a % coverage for each transcript
RNA-seq
updated 8 days ago by
Ram
43k • written 8 days ago by
jammydodger123456
▴ 40
1
vote
3
replies
254
views
CCA with random effects model
CCA
updated 23 days ago by
dariober
14k • written 24 days ago by
leranwangcs
▴ 120
1
vote
2
replies
314
views
Extracting information from gff3 file produced by augustus
augustus
gff3
updated 10 days ago by
Istvan Albert
100k • written 11 days ago by
Jiang
• 0
1
vote
4
replies
812
views
I want to calculate if the sample has whole genome duplication event or not?
sequencing
wgs
16 days ago by
Hyper_Odin
▴ 310
1
vote
3
replies
203
views
Filter BAM to keep only alignments at an interval, ignoring reads spliced over
samtools
bam
splicing
2 days ago by
WouterDeCoster
47k
1
vote
3
replies
350
views
how to do the repeatability filtering of vcf files?
snp
vcf.
updated 24 days ago by
Pierre Lindenbaum
161k • written 25 days ago by
Max
• 0
1
vote
0
replies
368
views
Differential expression analysis on multiple integrated datasets
microarray
Z-score
limma
differential-gene-expression
meta-analysis
updated 16 days ago by
Ram
43k • written 2.4 years ago by
michael.s
▴ 10
1
vote
2
replies
808
views
What type of normalization does removeBatchEffect function require as the input?
batch
limma
removeBatchEffect
rna-seq
batch-effect
updated 9 days ago by
Ram
43k • written 21 months ago by
ev97
▴ 20
1
vote
4
replies
280
views
Removing batch effect using combat-seq
batch
effect
RNA-Seq
combat-seq
updated 24 days ago by
BioinfGuru
★ 1.7k • written 24 days ago by
Netanel
• 0
1
vote
2
replies
922
views
vg surject for long reads
long-reads
vg
variation-graph
surject
updated 20 days ago by
Ram
43k • written 23 months ago by
ved_vyas
▴ 10
1
vote
2
replies
1.0k
views
An issue with application of SPAdes genome assembly in Galaxy
Galaxy
SPAdes
updated 23 days ago by
Ram
43k • written 2.4 years ago by
adnan.lahuf
• 0
1
vote
0
replies
155
views
DESeq2 comparing timepoints within treatment and account for background control change
RNAseq
DEG
DESeq2
updated 14 days ago by
Ram
43k • written 14 days ago by
ian.will
▴ 30
1
vote
1
reply
398
views
Load a full GFF3 into annotation track using arrow (Apollo)
arrow
python-apollo
Apollo
6 days ago by
renan.igor
• 0
1
vote
2
replies
821
views
Replacing default numbers with geneNames in enhancedVolcano
EnhancedVolcano
updated 23 days ago by
Ram
43k • written 2.6 years ago by
Mohan
• 0
1
vote
1
reply
177
views
Help/Direction Needed for Data Analysis of RNA
Sequencing
RNA-seq
DNA-Seq
updated 9 days ago by
dsull
★ 5.8k • written 9 days ago by
niruf
• 0
1
vote
2
replies
626
views
Nanopore multisample variant calling
SNPs
nanopore
SNP-calling
variants
multisample
27 days ago by
colindaven
6.4k
1
vote
1
reply
162
views
Failed kmer content
kmer
illumina
ngs
updated 2 days ago by
Ram
43k • written 2 days ago by
Kasturi
• 0
1
vote
3
replies
346
views
Ensembl gene id conversion
biomart
ensembl
updated 9 days ago by
ATpoint
82k • written 11 days ago by
naveedhasan2000
• 0
1
vote
2
replies
258
views
Is it possible to see so little adipocyte in white adipose tissue?
scRNA-seq
29 days ago by
kayah
• 0
1
vote
0
replies
1.1k
views
interpretation of trajectory and batch effect
monocle3
batch-effect
trajectory
updated 17 days ago by
Ram
43k • written 3.5 years ago by
tushard1987
▴ 10
523 results • Page
2 of 11
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