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946 results • Page
2 of 19
Sort: Votes
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Views
Votes
Replies
3
votes
4
replies
462
views
Genome Reference Consortium Human Build - Transcriptome Size Query
GRC
updated 12 days ago by
Ram
38k • written 10 months ago by
Oligo96
• 0
3
votes
4
replies
1.5k
views
Which files from PacBio output files to use in downstream analysis in R
R
PacBio
updated 7 days ago by
Ram
38k • written 18 months ago by
eimanpharmacist
▴ 20
3
votes
4
replies
484
views
Changing Temporary File Location for Local BLASTP to nr Database
protein
blast
nr
updated 9 days ago by
Ram
38k • written 11 weeks ago by
katieostrouchov
▴ 20
3
votes
2
replies
354
views
A way to find which genome builds a package supports
Bioconductor
genome
R
build
updated 17 days ago by
ATpoint
70k • written 19 days ago by
dshcherbo
• 0
3
votes
1
reply
198
views
analysing nanopore amplicon data
amplicon
genotyping
nanopore
ampliSAS
updated 28 days ago by
dthorbur
▴ 420 • written 29 days ago by
khoojj
▴ 20
3
votes
5
replies
1.9k
views
Cellranger count command for single end fastq
RNA-Seq
sequencing
updated 29 days ago by
Ram
38k • written 2.3 years ago by
sidrah.maryam
▴ 40
3
votes
4
replies
269
views
Creating sample groups from a combination of genes for survival analysis
Survival
7 days ago by
krushnach80
★ 1.1k
3
votes
3
replies
397
views
SamSort gatk invalid argument / no space left on disk
picard
gatk
samsort
nextflow
16 days ago by
Eliveri
▴ 340
3
votes
2
replies
163
views
Power analysis for patient samples
RNA-seq
8 days ago by
aropri
▴ 130
3
votes
1
reply
2.1k
views
reference and effective allele
snp
updated 20 days ago by
Ram
38k • written 8.4 years ago by
alex.crimi
• 0
3
votes
2
replies
507
views
[bam-readcount v.0.8.0] Fail to open BAM file –q
bam-readcount
BAM
updated 7 days ago by
Ram
38k • written 23 months ago by
vanessagpds
▴ 10
3
votes
2
replies
246
views
KM Plot for gene of interest (e.g. TP53) using TCGA-PAAD dataset
PAAD
KM
Plot
TCGA
7 days ago by
Manav
• 0
3
votes
4
replies
3.5k
views
How Can I Extract All The Read Pairs In A Region From Bam File ?
bam
updated 2 days ago by
Ram
38k • written 9.9 years ago by
siyu
▴ 150
3
votes
4
replies
1.4k
views
How to get regions with mapped reads
bed
bam
RNA-Seq
bedtools
updated 7 days ago by
Ram
38k • written 4.5 years ago by
nanoide
▴ 100
2
votes
1
reply
408
views
Bioinformatics application on data
WES
updated 12 days ago by
Ram
38k • written 19 months ago by
Sania
• 0
2
votes
9
replies
1.9k
views
SAM file quality check without converting into BAM
Alignment
SAM
updated 7 days ago by
Ram
38k • written 3.8 years ago by
vaish01kv
• 0
2
votes
6
replies
337
views
Genes in 10x don't match genes in ENSBL
gene_mapping
bioconductor
singleCellRNAseq
updated 19 days ago by
jv
★ 1.0k • written 20 days ago by
Sandra
▴ 10
2
votes
2
replies
357
views
bcftools annotate -a
bcftools
VCF
updated 12 days ago by
Ram
38k • written 28 days ago by
anasjamshed
▴ 120
2
votes
3
replies
1.9k
views
Does A Protein Interaction Network Created Directly From Literature Correspond To A Top Down Or A Bottom Up Approach?
network
model
updated 27 days ago by
Ram
38k • written 9.1 years ago by
Ashmit
• 0
2
votes
2
replies
1.2k
views
How to obtain lineage information from taxid?
euitls
taxid2lineage
accession2taxid
updated 12 days ago by
Ram
38k • written 2.4 years ago by
6schulte
▴ 30
2
votes
2
replies
690
views
Adjusting data for covariates
R
updated 12 days ago by
Ram
38k • written 2.1 years ago by
chutt
▴ 20
2
votes
10
replies
1.2k
views
multiple FASTA sequnces in to one full sequnce according to their chromosome number
NGS
FASTA
bam
updated 12 days ago by
Ram
38k • written 4.1 years ago by
Anu
• 0
2
votes
3
replies
279
views
mRNA Seq
NGS
updated 13 days ago by
Ram
38k • written 14 days ago by
Yaseen
▴ 10
2
votes
1
reply
1.1k
views
pacbio db and las files
db
pacbio
las
next-gen
updated 7 days ago by
Ram
38k • written 5.8 years ago by
biomagician
▴ 350
2
votes
6
replies
317
views
bioinformatics problems solved by graphs data structure
Graph
algorithm
data-structure
updated 6 days ago by
Ram
38k • written 6 days ago by
abdelmalek.benmeziane
• 0
2
votes
8
replies
536
views
Depth of Coverage in Mitochondrial Genome with Samtools
samtools
depth-of-coverage
Mitochondrial-genome
10 days ago by
Lida
• 0
2
votes
1
reply
2.1k
views
Question about PLINK allelic scoring (PRS)
plink
PRS
updated 13 hours ago by
Ram
38k • written 4.6 years ago by
wonseok.cchoi
• 0
2
votes
5
replies
2.4k
views
How to get gseKEGG() to accept an input gene list?
clusterprofiler
dose
gene-enrichment-analysis
R
updated 28 days ago by
redafazazi
▴ 20 • written 20 months ago by
DN99
▴ 20
2
votes
1
reply
598
views
Bioinformatics exercise on extracting FASTA sequences corresponding to taxon from a microbiome sequencing experimet in another file (.TSV)
fasta
homework
updated 12 days ago by
Ram
38k • written 2.2 years ago by
flisosergio
• 0
2
votes
2
replies
457
views
Unable to read fasta file
fasta
updated 7 days ago by
Ram
38k • written 21 months ago by
Aritra
• 0
2
votes
8
replies
9.1k
views
Size of typical genomic data
genomic
updated 2 days ago by
Ram
38k • written 4.9 years ago by
Nicolas Rosewick
10k
2
votes
3
replies
421
views
Genomics regions that common to atleast 10 cell types
bedtools
bedops
genome
bed
sequence
updated 6 days ago by
Ram
38k • written 2.8 years ago by
rohitsatyam102
▴ 690
2
votes
2
replies
1.3k
views
Perl script problem: Remove duplicates from my fasta file with help of perl
perl
Fasta
updated 7 days ago by
Ram
38k • written 5.0 years ago by
ArusjakGevorgyan
▴ 20
2
votes
4
replies
360
views
FeatureCounts >edgeR > GO
RNA-SEQ
12 hours ago by
Pegasus
▴ 80
2
votes
4
replies
586
views
Noob question: I want to use TCGA data to compare survival with mutations, how should I do it?
cancer
mutations
tcga
updated 12 days ago by
Ram
38k • written 10 months ago by
cdeantoneo31
▴ 10
2
votes
4
replies
252
views
Error with a function in ATAC-seq analysis
ATAC-seq
6 days ago by
Chris
▴ 70
2
votes
3
replies
347
views
HaplotypeCaller GENOTYPE GIVEN ALLELES doesn't genotype given alleles
Gatk
HaplotypeCaller
VCF
updated 7 days ago by
dthorbur
▴ 420 • written 5 weeks ago by
kamanovae
▴ 80
2
votes
6
replies
1.0k
views
GFF3 TO GTF CONVERSION
GFF3
Hydra
GFF
GTF
updated 8 days ago by
Ram
38k • written 14 months ago by
Shagnik
• 0
2
votes
3
replies
2.3k
views
Logic To Get Consensus Sequence
consensus
genomics
updated 29 days ago by
Ram
38k • written 9.4 years ago by
SRKR
▴ 180
2
votes
2
replies
4.5k
views
Filtering VCF with vcf-tools using --maf=0.0001 filters out all homozygous calls ?!
vcf
vcftools
variants
updated 16 days ago by
Ram
38k • written 5.0 years ago by
fwuffy
▴ 100
2
votes
0
replies
1.5k
views
Any relation between pan genome and genome plasticity?
genome
gene
sequence
updated 13 days ago by
Ram
38k • written 8.1 years ago by
Loub
▴ 20
2
votes
3
replies
220
views
RNAseq: same reads + more complete scaffold = fewer DEGs?
RNAseq
updated 6 days ago by
Darked89
4.2k • written 7 days ago by
phillip.brassington
▴ 10
2
votes
4
replies
448
views
Trouble with transcripts_id when using how_are_we_stranded_here python package
bash
sequencing
RNA-seq
12 days ago by
ashleymb1116
• 0
2
votes
3
replies
2.4k
views
What is the Difference Between Within Gene Isoform Frequency and Global Isoform Frequency?
genomic
updated 26 days ago by
Ram
38k • written 9.1 years ago by
jack
▴ 500
2
votes
5
replies
574
views
msigdbr returns the same genesets for mouse as in for human,
msigdbr
updated 8 days ago by
igor
13k • written 12 days ago by
e.r.zakiev
▴ 30
2
votes
2
replies
3.3k
views
dyld : Library not loaded: Reason: image not found
python
dyld
R
updated 12 days ago by
Ram
38k • written 22 months ago by
jjp55
▴ 20
2
votes
2
replies
256
views
cant get FASTQ from basespace, only option is SAV
basespace
RNAseq
illumina
updated 19 days ago by
GenoMax
127k • written 19 days ago by
gkarabiyik
• 0
2
votes
1
reply
1.4k
views
Example data to verify of RNA-Seq Analysis pipeline
hisat2
RNA-Seq
pipeline
updated 15 days ago by
Ram
38k • written 5.2 years ago by
hkarakurt
▴ 150
2
votes
2
replies
196
views
how best to analyze vcf files
vcf
updated 21 days ago by
iraun
5.9k • written 21 days ago by
Mali
• 0
2
votes
1
reply
217
views
How to create GO Bar Plot using data obtained from DAVID Functional Enrichment Analysis?
Plot
DAVID
R
updated 8 days ago by
Basti
★ 1.4k • written 8 days ago by
Stefanus C.B.
• 0
946 results • Page
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Comment: GO enrichment analysis
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Answer: Any tips in landing a bioinformatic job?
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Do you have a public facing github page (or equivalent) that provides examples of bioinformatics workflows you've created? For myself, if …
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Hi Ming Untrimmed reads have 76bp in average.
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