updated 20 minutes ago by
Pierre Lindenbaum
152k
•
written 57 minutes ago by
vvasta
•
0
0
votes
1
reply
24
views
0
votes
0
replies
56
views
0
votes
2
replies
61
views
updated 1 hour ago by
Pierre Lindenbaum
152k
•
written 4 hours ago by
jessewhite8077
•
0
0
votes
0
replies
51
views
0
votes
0
replies
36
views
0
votes
1
reply
168
views
updated 5 hours ago by
Pierre Lindenbaum
152k
•
written 6 hours ago by
Neel
▴
10
0
votes
0
replies
86
views
9 hours ago by
Alireza
▴
20
0
votes
0
replies
85
views
0
votes
0
replies
71
views
13 hours ago by
Kiran
•
0
0
votes
0
replies
57
views
13 hours ago by
Kiran
•
0
0
votes
0
replies
84
views
1
vote
1
reply
122
views
updated 6 hours ago by
Pierre Lindenbaum
152k
•
written 16 hours ago by
yb
▴
10
0
votes
1
reply
534
views
1
vote
0
replies
82
views
17 hours ago by
Camilo Andres
▴
20
0
votes
3
replies
134
views
updated 19 hours ago by
Pierre Lindenbaum
152k
•
written 20 hours ago by
Sarah
•
0
1
vote
5
replies
171
views
0
votes
0
replies
77
views
0
votes
0
replies
83
views
1
vote
1
reply
101
views
updated 22 hours ago by
GenoMax
125k
•
written 23 hours ago by
rijan_dhakal
•
0
1
vote
1
reply
112
views
1
vote
1
reply
110
views
0
votes
1
reply
94
views
0
votes
0
replies
74
views
1 day ago by
ciaki
•
0
0
votes
0
replies
76
views
0
votes
3
replies
177
views
0
votes
0
replies
100
views
1
vote
0
replies
75
views
1
vote
3
replies
145
views
updated 1 day ago by
Matthias Zepper
2.8k
•
written 1 day ago by
SushiRoll
▴
100
1
vote
3
replies
180
views
0
votes
0
replies
84
views
0
votes
0
replies
126
views
0
votes
1
reply
145
views
updated 1 day ago by
colindaven
4.4k
•
written 1 day ago by
Agamemnon
▴
60
0
votes
1
reply
148
views
0
votes
0
replies
92
views
1 day ago by
aUser
▴
20
0
votes
1
reply
160
views
updated 1 day ago by
mohammadhassanj
▴
230
•
written 1 day ago by
Ric
▴
430
1
vote
1
reply
128
views
updated 1 day ago by
Pierre Lindenbaum
152k
•
written 1 day ago by
Hayler Edu
▴
30
0
votes
0
replies
93
views
0
votes
0
replies
100
views
0
votes
2
replies
236
views
0
votes
1
reply
105
views
1
vote
4
replies
152
views
updated 2 days ago by
ATpoint
68k
•
written 2 days ago by
v.berriosfarias
▴
90
4
votes
5
replies
198
views
updated 1 day ago by
GenoMax
125k
•
written 2 days ago by
luzglongoria
▴
40
2
votes
4
replies
170
views
0
votes
0
replies
86
views
0
votes
1
reply
121
views
0
votes
4
replies
234
views
0
votes
1
reply
125
views
0
votes
2
replies
197
views
1 day ago by
D3xt3R
•
0
0
votes
1
reply
139
views
updated 1 day ago by
Fabio Marroni
★
2.9k
•
written 2 days ago by
Koustav Maiti
•
0
1
vote
2
replies
221
views
Recent Votes
Recent Locations •
All
Cambridge, MA, 1 minute ago
ETH Zurich, 2 minutes ago
United States, 4 minutes ago
USA, 7 minutes ago
Bologna, 7 minutes ago
United States, 9 minutes ago
United Kingdom, 9 minutes ago
Recent Awards •
All
Popular Question to
maxdlf12
•
0
Teacher to
Pierre Lindenbaum
152k
Popular Question to
LDT
▴
220
Popular Question to
Michael Dondrup
52k
Popular Question to
caochch
•
0
Popular Question to
timothy.kirkwood
▴
130
Teacher to
Alex Reynolds
34k
Recent Replies
Comment: Gene Set Enrichment Analysis, pathway, metabolism
by
Rob
▴
160
Thank you FrankStarling, ATpoint, jv, these were so helpful.
Comment: translate CDS to prot formatted with nt nubers
by
Pierre Lindenbaum
152k
> with nucleotide numbers and DNA/prot aligned line by line
what does it mean ? Create a Minimal, Reproducible Example to enable others t…
Comment: How to translate CDS to an amino acid sequence
by
vvasta
•
0
I tried several of the online DNA translation tools but have not found one that would output DNA/prot alignment with nucleotide number
w…
Comment: How possible deadlocks are there while migrating from MYISAM to InnoDb?
by
Pierre Lindenbaum
152k
but you already knew it. https://www.biostars.org/p/9551097/#9551098
Comment: How possible deadlocks are there while migrating from MYISAM to InnoDb?
by
Pierre Lindenbaum
152k
your question is not related to bioinformatics. Ask stackoverflow.com.
Comment: Statistical test for checking cis regulation?
by
Fabio Marroni
★
2.9k
Hi lumos. It is not very clear to me what kind of information are you using for the test and how are you measuring cis-regulation. Are you …
Comment: Error 134 while aligning using hisat2
by
Fabio Marroni
★
2.9k
Other instances of the same error were indeed related to disk [space][1]. Can you post the output of the command: `df -h /bams/`? Another p…
Comment: **Error: unable to open file or unable to determine types for file**
by
Pierre Lindenbaum
152k
```
Please ensure that your file is TAB delimited (e.g., cat -t FILE).
- Also ensure that your file has integer chromosome coordinates in t…
Comment: bgzip error 4
by
Pierre Lindenbaum
152k
I/O error. Where are you writing , which filesytem ? do you have enough space ? what is the output of
gzip < chr1.vcf.gz > chr1.vcf.gz…
Comment: Error: unable to open file or unable to determine types for file bed file
by
Neel
▴
10
**Error: unable to open file or unable to determine types for file**
Hi i am trying to run this commands **bedtools intersect -a Ec_k1…
Answer: Anti-miRNA oligonuclotide identification
by
Asan Emirsale
•
0
You should find complementary sequences to make the miRNA silent. Should it be the Biopython or another tool. The solution might be as simp…
Comment: counting reads in a fastq file using a refrence fasta file
by
vaslanzadeh
▴
10
Thanks, this works but it is extremely slow, is there any other alternatives?
Answer: HISAT2 output direct to bam sorted
by
ATpoint
68k
hisat2 --dta -x genome -1 ../fastq_zea_mays/SRR214880_1.fastq -2 ../fastq_zea_mays/SRR214880_2.fastq \
| samtools sort -o sorted.b…
Comment: Error: Please supply a reference FASTA/GBK/EMBL file with --reference
by
Neel
▴
10
Yeah, its working now thank you so much for your reply.
Traffic: 1081 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6