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News: Nhgri Meeting About Human Variation Analysis Live Streaming [Now Done]
next-gen exome variation
updated 9 months ago by 41k • written 11.2 years ago by 11k
5
votes
0
replies
1.7k
views
News: Bioinformatics Contest 2019
bioinforussia bioinfcontest bioinfcontest2019
updated 6 months ago by 41k • written 5.0 years ago by ▴ 50
5
votes
4
replies
1.8k
views
News: 2nd International Conference on Pediatric Oncology and Pediatric Medicine
gene
updated 7 months ago by 41k • written 6.8 years ago by • 0
5
votes
0
replies
2.0k
views
News: Ebi Rdf Platform Launched Today
EBI
updated 9 months ago by 41k • written 10.2 years ago by 158k
5
votes
0
replies
3.0k
views
News: Penn State now offers an Online Graduate Certificate: Applied Bioinformatics
bioinformatics-education
updated 8 months ago by 41k • written 9.3 years ago by 99k
5
votes
0
replies
2.2k
views
News: [UPDATED] Hands-On NGS Data Analysis Workshops 2019
NGS Bisulfite-Seq RNA-Seq DNA-Seq
updated 6 months ago by 41k • written 5.0 years ago by 10k
4
votes
0
replies
1.1k
views
News: Bioconductor 2016 conference materials available
bioconductor R
updated 7 months ago by 41k • written 7.4 years ago by 26k
4
votes
1
reply
1.8k
views
News: scRNA-seq data analysis Workshop in Berlin
RNA-Seq next-gen
updated 6 months ago by 41k • written 5.1 years ago by ★ 2.4k
4
votes
1
reply
1.7k
views
News: NCBI BLAST URL domain changes to take effect December 1, 2014
blast ncbi
updated 21 months ago by 41k • written 9.0 years ago by ★ 2.2k
4
votes
0
replies
2.3k
views
News: Upcoming Workshop: Ensembl Perl APIs
ensembl APIs Perl workshops
updated 8 months ago by 41k • written 9.1 years ago by ★ 5.2k
4
votes
0
replies
1.3k
views
News: ONLINE course - Metagenomics, metatranscriptomics, and multi'omics for microbial community studies
next-gen-sequencing
updated 5 months ago by 41k • written 3.7 years ago by ★ 2.4k
4
votes
0
replies
1.5k
views
News: $650M gift to Broad seeks to propel (Genomics based ) psychiatric research
sequencing
updated 9 months ago by 41k • written 9.4 years ago by ★ 5.2k
4
votes
3
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1.8k
views
News: How the strengths of Lisp-family languages facilitate building complex and flexible bioinformatics applications
ChIP-Seq RNA-Seq
updated 7 months ago by 41k • written 6.9 years ago by ▴ 350
4
votes
1
reply
558
views
News: Online Course - A Practical Introduction to NGS Data Analysis (September 26-28, 2022)
workshop ngs data-analysis
updated 16 months ago by 41k • written 16 months ago by 10k
4
votes
0
replies
1.7k
views
News: Iscb Wikipedia Competition 2013
wikipedia
updated 9 months ago by 41k • written 10.3 years ago by ★ 2.0k
4
votes
3
replies
2.2k
views
News: India Recently Started Personal Genome Profiling, Commercially.
genome-profiling
updated 9 months ago by 41k • written 10.6 years ago by ▴ 970
4
votes
1
reply
1.3k
views
News: The 1000 Genomes Project Data Portal Beta Release
1000genomes next-gen SNP
updated 7 months ago by 41k • written 7.6 years ago by ★ 1.8k
4
votes
2
replies
397
views
News: Standalone NCBI ClusteredNR database now available for download
ClusteredNR NCBI standalone BLAST
12 weeks ago by PeterC_NCBI ▴ 370
4
votes
0
replies
1.4k
views
News: Helen Berman Wins The 2013 Delano Award For Computational Biosciences
delano-award
updated 9 months ago by 41k • written 10.7 years ago by 18k
4
votes
2
replies
3.0k
views
News: NCBI NOW (Next generation sequencing Online Workshop) October 13 - 23 , 2015
NCBI DNA-Seq NGS RNA-Seq
updated 8 months ago by 41k • written 8.2 years ago by ★ 2.2k
4
votes
0
replies
2.2k
views
News: Rna-Seq Workshop In Oslo - Seats Available
RNA-seq
updated 9 months ago by 41k • written 9.8 years ago by ▴ 60
4
votes
1
reply
1.8k
views
News: Bioinformatics Contest 2018
contest
updated 6 months ago by 41k • written 5.9 years ago by ▴ 40
4
votes
0
replies
1.4k
views
News: All of Us (NIH) precision medicine research program is now open for enrollment
precision-medicine
updated 6 months ago by 41k • written 5.6 years ago by 136k
4
votes
0
replies
6.3k
views
News: The genome Aggregation Database (gnomAD)
gnomAD
updated 7 months ago by 41k • written 6.8 years ago by 158k
4
votes
0
replies
1.8k
views
News: Bioinformatics education: biology-inspired bioinformatics with project-based learning
education RNA-seq
updated 6 months ago by 41k • written 5.6 years ago by ▴ 340
4
votes
4
replies
2.8k
views
News: Join The Dnanexus Developer Program
api cloud
updated 9 months ago by 41k • written 10.5 years ago by ▴ 30
4
votes
1
reply
1.1k
views
News: Bioinformatics Workflows with Nextflow
Netflow reproducibility Workflows
updated 5 months ago by 41k • written 4.0 years ago by ★ 2.4k
4
votes
3
replies
787
views
News: You may need to cleanup duplicate NCBI BLAST nt database volumes on your system
databases NCBI BLAST
3 months ago by PeterC_NCBI ▴ 370
4
votes
4
replies
1.7k
views
News: 12th International Conference on Advancements in Bioinformatics and Drug Discovery
genome Computational-Biology
updated 6 months ago by 41k • written 5.6 years ago by ▴ 20
4
votes
3
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1.8k
views
News: Proteomics and Genomics Submit your Research Journals
Research Genomics Journals Proteomics
updated 12 months ago by 41k • written 8.4 years ago by • 0
4
votes
0
replies
1.8k
views
News: Viral Bioinformatics and Genomics course August 2017, Glasgow
next-gen
updated 7 months ago by 41k • written 6.8 years ago by ▴ 40
4
votes
3
replies
3.0k
views
News: -max_target_seqs 1 in NCBI standalone BLAST does not do what you think it does
blast
updated 6 months ago by 41k • written 5.1 years ago by 11k
4
votes
0
replies
2.8k
views
News: Python for Scientists - FREE Ebook from O'Reilly
python Data-Analysis
updated 8 months ago by 41k • written 8.2 years ago by ★ 2.2k
4
votes
0
replies
658
views
News: Call for Bioinformatics Papers - Genes Special Issue
gene
updated 5 months ago by 41k • written 3.9 years ago by ▴ 730
4
votes
0
replies
958
views
News: SIG Workshop to discuss developments in computational pathology and its interfacing opportunities with bioinformatics during ECCB 2018
microscopy wsi digital-pathology
updated 6 months ago by 41k • written 5.3 years ago by ▴ 40
4
votes
0
replies
845
views
News: The BioCompute Object App-a-thon starts on May 14!
standards computation pipeline
updated 8 months ago by 41k • written 4.6 years ago by ▴ 150
4
votes
0
replies
464
views
News: A Practical Introduction to Single-Cell RNA-Seq Data Analysis (November 8-10, 2023 in Berlin, Germany)
NGS RNA-Seq single-cell workshop
5 months ago by David Langenberger 10k
4
votes
4
replies
1.6k
views
News: VCFclin working group
vcfclin
updated 9 months ago by 41k • written 9.6 years ago by ▴ 30
4
votes
0
replies
2.3k
views
News: 2nd UK Bioinformatics Student Symposium on 7 Oct '15 at TGAC, Norwich
symposium
updated 14 months ago by 41k • written 8.3 years ago by ▴ 100
4
votes
5
replies
2.7k
views
News: Kover will provide support via Biostars
kmer kover machine-learning
updated 7 months ago by 41k • written 7.5 years ago by ▴ 90
4
votes
3
replies
1.7k
views
News: Boston Genomics Hackathon (facilitated by NCBI)
NCBI RNA-Seq DNA-seq hackathon
updated 8 months ago by 41k • written 7.7 years ago by ▴ 330
4
votes
3
replies
3.2k
views
News: CAFE v4.0 available
phylogenetics CAFE
updated 6 months ago by 41k • written 6.7 years ago by ▴ 150
4
votes
1
reply
2.1k
views
News: Mark2Cure launches tool to help crowd-source curation of the biomedical literature
crowd-sourcing
updated 11 months ago by 41k • written 8.9 years ago by 20k
4
votes
1
reply
2.3k
views
News: ENCODE Users' Meeting
encode ucsc conference functional-genomics ensembl
updated 16 months ago by 41k • written 8.5 years ago by 23k
4
votes
0
replies
1.7k
views
News: Call for Abstracts for the 18th Annual Bioinformatics Open Source Conference (BOSC 2017)
BOSC OBF
updated 7 months ago by 41k • written 6.7 years ago by ★ 2.2k
4
votes
0
replies
2.8k
views
News: Wed 9/25 On-Line, Live Tutorial For Integrated Genome Browser
visualization ChIP-seq RNA-seq igv genome-browser
updated 9 months ago by 41k • written 10.2 years ago by ★ 2.4k
4
votes
0
replies
2.3k
views
News: Google Genomics and Broad Institute Team Up to Tackle Genomic Data
google broad gatk
updated 11 months ago by 41k • written 8.4 years ago by ★ 5.2k
4
votes
1
reply
2.2k
views
News: 2014 ISCB Wikipedia Article Competition announcement
ISCB competition Wikipedia
written 9.3 years ago by ★ 2.0k
4
votes
0
replies
2.9k
views
News: New simulation dataset for 'A benchmark for RNA-seq quantification pipelines'
RNA-Seq
updated 7 months ago by 41k • written 7.5 years ago by ★ 2.5k
4
votes
2
replies
1.2k
views
News: Hands-On Workshop: How to use bisulfite-treated sequencing to study DNA methylation (BS-Seq, Bisulfite-Seq, WGBS)
Workshop methylation bisulfite
updated 5 months ago by 41k • written 4.2 years ago by ★ 1.0k
1,000 results • Page 5 of 20
Recent Votes
Answer: GO categorization
Comment: Using metagenome assembly and binning to identify and mitigate contamination in
Answer: GO categorization
C: Expected a file with 2 fields per line. GenomicsDBImport from GATK ?
C: Expected a file with 2 fields per line. GenomicsDBImport from GATK ?
Answer: Problematic fastq files...How can we trust them?
Comment: Problematic fastq files...How can we trust them?
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Popular Question to beausoleilmo ▴ 560
Commentator to Brian Bushnell 19k
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Answer: "MethylKit" package for WGBS data by viveksomya123 • 0
Why I am getting this histogram of CpG coverage using methylkit, is this the failure of bisulfite library preparation![enter image descript…
Comment: Should I scale all genes in single cell Seurat? by synat.keam ▴ 80
Thanks, António for your kind and detailed responses. You helped clear my doubt about scaling! Kind Regards, Synat
Comment: Using metagenome assembly and binning to identify and mitigate contamination in by Brian Bushnell 19k
It's not a silly question! And yes, it can be done. JGI is currently testing various binning tools to try to find the best protocol for t…
Answer: GO categorization by geneontologyhelp ▴ 270
[We have this in our FAQ][1]. PANTHER version 18.0, which powers the enrichment analysis on our homepage, has [143 species][2] loaded and …
Comment: Problematic fastq files...How can we trust them? by blackadder ▴ 30
Thanks for the feedback fellas! I agree with the aforementioned!
Comment: Which program, tool, or strategy do you use to visualize genomic rearrangements? by cmdcolin ★ 3.4k
i collect a large list of tools for visualization, some are specialized for SVs and re-arrangements. you can filter by tag (SV, CNV, compar…
Answer: The number of variations in the pan-genome is reduced compared to the variations by Jordan M Eizenga ▴ 410
If variants overlap in the genome, `vg deconstruct` will combine them into one locus with multiple alleles. If your input VCF has a lot of …
Answer: How to find node Postion and source(sample) ? by Jordan M Eizenga ▴ 410
You can use `vg find -P` for this. This command is not really designed to be used frequently throughout the genome (each invocation loads t…
Comment: How Can I move the scattered dots more closer into the center of box ? by Brian Bushnell 19k
I would just draw them in by hand where you want them.
Comment: How to identify CG, CHG, or CHH from MeDIP data by Tm ★ 1.1k
I know that CpG types can be identified using whole genome bisulphite data. But could it be possible using MeDIP data too? We tried using Q…
Comment: Problematic fastq files...How can we trust them? by Brian Bushnell 19k
I'd have to agree there... while you can generally recover a fastq to the point that it is spec-compliant, you don't know how or why the f…
Answer: Finding human .vcf files online to download by cmdcolin ★ 3.4k
---------- some common ones include 1000 genomes vcf (large, multi-sample) http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/ …
Comment: GO categorization by m.habib • 0
Thanks Istvan for your reply. I think these programs will do the same as Trinotate. Trinotate searches against numerous databases and gener…
Comment: scRNA-seq: Consistent low number of cells and low fraction reads across the samp by jv ★ 1.2k
I wonder if using cell hashing, which would allow pooling of cells from multiple samples before droplet formation, could improve things her…
Comment: Where Can I Find The Basepair Positions Of Chromosome Bands? by Malachi Griffith 19k
And the hg38 version can be found here: https://hgdownload.soe.ucsc.edu/goldenPath/hg38/database/cytoBand.txt.gz And for convenience, upda…
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