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News: Online course - Genome Assembly and Annotation
Long-reads Genome-Annotation Biodiversity Genome-Assembly
updated 15 months ago by 43k • written 16 months ago by ★ 2.5k
1
vote
3
replies
929
views
News: NCBI BLAST ClusteredNR database now available for blastx and PSI-BLAST searches
PSI-BLAST blastx BLAST NCBI ClusteredNR
16 months ago by PeterC_NCBI ▴ 410
0
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0
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598
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News: Winter School in Bioinformatics - last seats available
Genomics Unix RNA-seq docker
updated 15 months ago by 43k • written 16 months ago by ★ 2.5k
0
votes
0
replies
514
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News: Virtual RNA-seq Analysis (Model Organism) Workshop
virtual expression rna-seq analysis workshop
16 months ago by mia.nahom ▴ 10
0
votes
0
replies
526
views
News: Introduction to R Shiny course
WebApplications R RShiny
16 months ago by carlopecoraro2 ★ 2.5k
1
vote
0
replies
577
views
News: New version of ElasticBLAST (1.0.0) available.
NCBI ElasticBLAST BLAST
16 months ago by PeterC_NCBI ▴ 410
0
votes
1
reply
550
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News: Courses in January - still a few seats available
R-Shiny Genomics Unix R
updated 15 months ago by 43k • written 16 months ago by ★ 2.5k
0
votes
0
replies
375
views
News: Sex Chromosome Evolution course
Genomics Sex-Chromosome-Evolution
updated 16 months ago by 43k • written 16 months ago by ★ 2.5k
0
votes
0
replies
501
views
News: Cellosaurus release 44 is available
cellosaurus cell-line
updated 16 months ago by 43k • written 16 months ago by ▴ 120
0
votes
0
replies
420
views
News: Introductory video to the Cellosaurus
cellosaurus cell-line
updated 16 months ago by 43k • written 16 months ago by ▴ 120
0
votes
3
replies
1.1k
views
News: Nvidia Clara Parabricks is FREE for R&D
nvidia workflow gpu
updated 16 months ago by 2.8k • written 16 months ago by 161k
2
votes
3
replies
716
views
News: NCBI Comparative Genome Viewer now allows searches for genes across aligned assemblies
Browser NCBI Alignments Genome
16 months ago by PeterC_NCBI ▴ 410
1
vote
6
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1.2k
views
News: Course - FLOW CYTOMETRY ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor FlowCytometry R
updated 15 months ago by ▴ 100 • written 16 months ago by ★ 2.5k
0
votes
0
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341
views
News: INTRODUCTION TO ANALYTICAL PALEOBIOLOGY: FOSSIL RECORD BIASES, DIVERSITY, & BIOGEOGRAPHY
Biogeography Paleobiology R
16 months ago by carlopecoraro2 ★ 2.5k
1
vote
0
replies
370
views
News: Analysis of Cancer Genomes Using R and Bioinformatic Tools
Genomics Cancer-Genomics R
updated 17 months ago by 43k • written 17 months ago by ★ 2.5k
0
votes
0
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569
views
News: course - GENOME ASSEMBLY USING OXFORD NANOPORE SEQUENCING
Long-reads Assembly Nanopore Genome
17 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
370
views
News: Online training - VERSION CONTROL FOR RESEARCHERS
Version Control Git Github
17 months ago by carlopecoraro2 ★ 2.5k
0
votes
1
reply
471
views
News: Research Training In NGS Data Analysis
analysis data-analysis
updated 17 months ago by 43k • written 17 months ago by • 0
0
votes
0
replies
464
views
News: Bayesian regression modeling in R course
RegressionModeling Bayesian R
17 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
507
views
News: Genome Assembly and Annotation course
Annotation Nanopore GenomeAssembly Pacbio
17 months ago by carlopecoraro2 ★ 2.5k
3
votes
0
replies
1.2k
views
News: Changes to the default NCBI BLAST nucleotide database (nt). Learn more and provide feedback!
NCBI Databases BLAST
17 months ago by PeterC_NCBI ▴ 410
0
votes
0
replies
420
views
News: Nextflow online training
Nextflow Workflow Reproducibility
updated 17 months ago by 43k • written 17 months ago by ★ 2.5k
0
votes
2
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1.3k
views
News: :: FINAL CALL :: Next-Generation Sequencing Data Analysis: A Practical Introduction (December 12-14, 2022 in Munich, Germany)
rnaseq dnaseq sequencing ngs workshop
17 months ago by David Langenberger 11k
0
votes
0
replies
524
views
News: The Association for Single Cell Analysis (ASCA)
genomics singlecell metabolomics sequencing proteomics
17 months ago by dnsv.ev • 0
0
votes
0
replies
463
views
News: Deep Learning in Population Genomics and Phylogeography
DeepLearning Phylogeography PopulationGenomics
18 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
442
views
News: Metabarcoding in Microbial Ecology Workshop
Qiime2 R Metabarcoding Microbial-Ecology
18 months ago by carlopecoraro2 ★ 2.5k
2
votes
2
replies
659
views
News: Gene Set Enrichment Analysis in R/Bioconductor
Gene-Set-Enrichment-Analysis R Cancer-Genomics GSEA
18 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
397
views
News: Analysis of RNA sequencing data with R/Bioconductor course.
Bioconductor RNAseq R
18 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
602
views
News: Winter School in Bioinformatics
course workshop
updated 17 months ago by 43k • written 18 months ago by ★ 2.5k
1
vote
0
replies
476
views
News: Introduction to Nextflow
Nextflow
updated 17 months ago by 43k • written 18 months ago by ★ 2.5k
0
votes
2
replies
720
views
News: Seascape Genomics in R
Genomics Seascape R
updated 17 months ago by 43k • written 18 months ago by ★ 2.5k
0
votes
0
replies
378
views
News: Bioinformatics courses in November
Bioconductor Genomics R
updated 17 months ago by 43k • written 18 months ago by ★ 2.5k
0
votes
0
replies
889
views
News: Flow cytometry analysis with R/Bioconductor course
Bioconductor R Cytometry Flow
18 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
412
views
News: course: RNA-seq analyses in non-model organisms
differential Bioconductor RNAseq expression non-model organisms analysis R
19 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
416
views
News: course - Developing R/Bioconductor packages for genomics
developing package Bioconductor Genomics R
19 months ago by carlopecoraro2 ★ 2.5k
2
votes
0
replies
477
views
News: Four NCBI workshops in October (BLAST, Primer-BLAST, Metagenome analysis, Structures in iCn3D)
metagenomics MagicBLAST BLAST NCBI Primer-BLAST
19 months ago by PeterC_NCBI ▴ 410
0
votes
0
replies
643
views
News: course - Unix and shell scripting for bioinformatics
bash Shell-scripting Unix
updated 17 months ago by 43k • written 19 months ago by ★ 2.5k
0
votes
0
replies
439
views
News: course: Data Visualization in Python
Visualisation Python Data
updated 19 months ago by 142k • written 19 months ago by ★ 2.5k
0
votes
0
replies
431
views
News: Seascape Genomics in R course
Genomics R Seascape Population
19 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
557
views
News: Cellosaurus API
line cell API
19 months ago by Amos Bairoch ▴ 120
0
votes
0
replies
443
views
News: Cellosaurus release 43 is available
cellosaurus cell-line
updated 16 months ago by 43k • written 19 months ago by ▴ 120
0
votes
0
replies
387
views
News: Genomics Webinar: Using Mastermind’s New ClinVar Integration to Accelerate Clinical Diagnoses
variant-interpretation genomics database webinar
updated 17 months ago by 43k • written 19 months ago by • 0
0
votes
0
replies
365
views
News: course: Population Genomic Inference from Low-coverage Whole-genome Sequencing Data
whole-genome genomics population low-coverage sequencing
updated 19 months ago by 22k • written 19 months ago by ★ 2.5k
0
votes
0
replies
387
views
News: :: FINAL CALL :: RNA-Seq Data Analysis Workshop (October 25 - 28, 2022 in Leipzig, Germany) - 2 seats left
RNA-Seq workshop transcriptomics
19 months ago by David Langenberger 11k
0
votes
0
replies
345
views
News: Getting the most out of R course - last call
ggplot2 R tidyverse
19 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
431
views
News: The NCTR Indel Calling from Oncopanel Sequencing Data Challenge Winners have been announced!
FDA-challenge
updated 17 months ago by 43k • written 19 months ago by ▴ 10
1
vote
0
replies
443
views
News: Webinar (free) on Multimodal Single-Cell Data from winner of NeurIPS 2021
ATAC-seq CITE-seq scRNA-seq
19 months ago by Alexander ▴ 220
1
vote
0
replies
404
views
News: course Reproducible Analysis With R
R Reproducibility analysis Data
20 months ago by carlopecoraro2 ★ 2.5k
10
votes
4
replies
1.0k
views
News: Good morning
good morning
updated 20 months ago by 100k • written 20 months ago by 87k
6
votes
7
replies
4.2k
views
News: New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
DiffBind ChIP-seq deepTools visualization ATAC-seq
20 months ago by Rory Stark ★ 2.0k
1,000 results • Page 6 of 20
Recent Votes
Answer: GRCh38.gmap file
Comment: GRCh38.gmap file
Answer: GRCh38.gmap file
Answer: GRCh38.gmap file
Answer: Design matrix Differential expression analysis
A: PCA plot from read count matrix from RNA-Seq
A: PCA plot from read count matrix from RNA-Seq
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Comment: Design matrix Differential expression analysis by Gordon Smyth ★ 7.1k
> When is it recommended to use the design <- cbind(Intercept=1,Group=c(-1,-1,-1,1,1,1)) It is not recommended. No such code appears anywh…
Comment: GRCh38.gmap file by lorena9132 ▴ 10
Hi Mathew, The .txt files provided in the link differ from the .gmap files, but after several attempts, I succeeded in generating the .gma…
Answer: GRCh38.gmap file by Mathew ▴ 30
Hi, I have spent some time searching for a GRCH38 map file for you. I have found a certain publication that uses a hg38 genetic map file…
Answer: Association study using SNP data by Mathew ▴ 30
Hi, You asked three questions so I will attempt to help the best I can **What should be the optimal GC score cutoff** It sounds li…
Comment: Design matrix Differential expression analysis by SHN ▴ 40
Thank you for your explanation. I am working on the cell lines and I am investigating the effect of the treatment on the expression level, …
Answer: Issues with Mixture file when using CIBERSORTx by vjanve • 0
I ran into same issue of "duplicated gene symbol(s)": 1: In CIBERSORTxFractions(sigmatrix = sigmatrix, mixture = mixture, : 22292 dup…
Comment: creating batch colum for batch correction by Expert ▴ 10
Thank you for your response. These samples were collected from the same patient at different time points(day 0, 8 and 18) and these are ind…
Comment: creating batch colum for batch correction by ATpoint 82k
Not sure I follow. Can you first of all describe which comparisons you want to make, pretending there was no batch effect at all. Write dow…
Comment: Pindel Segmentation Fault Error by Ruqaiya • 0
This the tool still problematic?
Comment: Segmentation error while using a tool by Ruqaiya • 0
Thank you for the advice, i'll keep that in mind.
Comment: Segmentation error while using a tool by Ruqaiya • 0
I am trying to reproduce some bioinformatics data from a research paper-[this paper][1] as i was asked to work on an MRSA bioinfo project, …
Answer: Segmentation error while using a tool by Mensur Dlakic ★ 27k
Most likely you didn't do anything wrong. Going by your previous post that you have only 8 GB of RAM, the most likely reason is the lack of…
Comment: Segmentation error while using a tool by Thanujay S • 0
Hey @Ruqaiya! Can you please give more details on why smalt is opted here? According to what I can see, the tool has become obsolete! Why …
Comment: Extracting mutation status from MAF files - TCGA by Thanujay S • 0
Hey! Can you explain the question further? What have you tried?
Comment: Downloading older version of a tool by Ruqaiya • 0
I tried the 2nd option only. I got the files of older version from the author but that version isn't working on my WSL, it's showing Segmen…
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