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News: Training in Molecular Modeling and Molecular Dynamics @NIH,February 18-21,2020
Structural-biology Modeling next-gen
updated 11 months ago by 43k • written 4.3 years ago by ▴ 140
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683
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News: EMBL Course: Computing Skills For Reproducible Research: Software Carpentry
Computation
updated 11 months ago by 43k • written 4.6 years ago by ▴ 10
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230
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News: Online course: Reproducibility in Bioinformatics
Singularity Version-Control Docker Containers
updated 7 weeks ago by 43k • written 7 weeks ago by ★ 2.5k
0
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0
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439
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News: course - DNA METHYLATION IN ECOLOGY AND EVOLUTION
Non-Model-Organisms DNA-Methylation BS-seq
updated 9 months ago by 43k • written 10 months ago by ★ 2.5k
0
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1.8k
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News: WORKSHOP **Metagenomics, metatranscriptomics, and multi'omics for microbial community studies **
Metagenomics sequencing metatranscriptomics
updated 12 months ago by 43k • written 6.3 years ago by ★ 2.5k
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0
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535
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News: International Conference on Machine learning and Cloud Computing (MLCL 2020)
Assembly SNP sequencing
updated 11 months ago by 43k • written 4.1 years ago by ▴ 10
0
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0
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592
views
News: Speciation Genomics course
R SNP next-gen
updated 11 months ago by 43k • written 4.4 years ago by ★ 2.5k
0
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0
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987
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News: Training in Advanced Transcriptomics (RNASeq) Analysis @ NIH, USA
training RNA-Seq next-gen
updated 11 months ago by 43k • written 5.1 years ago by ▴ 140
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0
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333
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News: Course - Computational Tumor Evolution
Tumor-Evolution Cancer-Genomics
updated 5 months ago by 43k • written 6 months ago by ★ 2.5k
0
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0
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346
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News: Practical Hands-On Introduction to R course
R Tidyverse Data-Analysis
updated 5 months ago by 43k • written 5 months ago by ★ 2.5k
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0
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1.4k
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News: New bioinformatics courses at Edinburgh Genomics
Training R Linux RNA-Seq Workshop
updated 11 months ago by 43k • written 5.3 years ago by ▴ 40
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1.4k
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News: eDNA Metabarcoding Workshop in Canada
R eDNA next-gen
updated 11 months ago by 43k • written 5.9 years ago by ★ 2.5k
0
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0
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735
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News: Training in Bioinformatic Analysis of Next Generation Sequencing Data@NIH
Genomics RNA-Seq Biomedical next-gen
updated 11 months ago by 43k • written 4.3 years ago by ▴ 140
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0
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1.0k
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News: Course: Transposable elements. 23-27 April 2018 (Berlin)
genome next-gen assembly
updated 12 months ago by 43k • written 6.2 years ago by ★ 2.5k
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0
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668
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News: Comparative Genomics Workshop . registration deadline
assembly Pacbio
updated 11 months ago by 43k • written 4.7 years ago by ★ 2.5k
0
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0
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203
views
News: Online course: Network Analysis in R
NetworkAnalyis R
4 weeks ago by carlopecoraro2 ★ 2.5k
0
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0
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312
views
News: University of Connecticut Single Cell RNA-seq Workshop December 12-15, 2023
expression singlecell rnaseq
5 months ago by mia.nahom ▴ 10
0
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0
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453
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News: Online course: Easily analyze single cell RNA-seq data with Cellenics®, a user-friendly web-based platform
scRNA-seq training single-cell-RNA-seq
updated 8 months ago by 43k • written 8 months ago by • 0
0
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0
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1.1k
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News: Cambridge Bioinformatics Hackathon 2018
Machine-Learning Code-Fest Hackathon
updated 11 months ago by 43k • written 5.6 years ago by • 0
0
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0
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467
views
News: Course - Network Analysis in Systems Biology with R/Bioconductor
R Systems-Biology Network-Analysis Bioconductor
updated 9 months ago by 43k • written 11 months ago by ★ 2.5k
0
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0
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505
views
News: Course - Structural Variant detection and comparison
SVs Structural-Variants
updated 9 months ago by 43k • written 9 months ago by ★ 2.5k
0
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0
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372
views
News: Research Breakthrough in Identifying Viral Escape Mutations for Improved Therapeutic Design
sequence-analysis sars-cov-2 spike-protein
updated 7 months ago by 43k • written 8 months ago by • 0
0
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0
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771
views
News: Webinar: Single Cell Multi-omics Data Analysis in Partek Flow - Visualization of CRISPR Data
CRISPR single-cell
updated 11 months ago by 43k • written 4.5 years ago by ▴ 30
0
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0
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430
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News: Physalia courses in September
Genomics R Data-Science
updated 10 months ago by 43k • written 10 months ago by ★ 2.5k
0
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0
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1.2k
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News: Comparative Genomics Workshop (Berlin, 1-5 October 2018). Last Call
next-gen PACBIO
updated 11 months ago by 43k • written 5.8 years ago by ★ 2.5k
0
votes
0
replies
367
views
News: Introduction to Nextflow (2 seats left)
Nextflow Workflow Reproducibility
updated 8 months ago by 43k • written 8 months ago by ★ 2.5k
0
votes
0
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121
views
News: Online course: Bioinformatic analysis of transposable elements
GenomeAssembly Transcriptomics TransposableElements ManualCuration
13 days ago by carlopecoraro2 ★ 2.5k
0
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0
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883
views
News: OmicsLogic Genomics Online Program
dna next-gen alignment genomics
updated 11 months ago by 43k • written 4.9 years ago by ▴ 340
0
votes
0
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1.1k
views
News: Training - Bioinformatics with Bash and Python
programming bash python
updated 11 months ago by 43k • written 5.1 years ago by ★ 2.5k
0
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0
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679
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News: Training in NCBI Resources for Biomedical Researchers @NIH
Resources NCBI Biomedical Researchers Programming
updated 11 months ago by 43k • written 4.2 years ago by ▴ 140
0
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0
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882
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News: BioSearch Engine Design source code under CC-BY license
BioSearch Engine-Design
updated 11 months ago by 43k • written 5.8 years ago by ▴ 20
0
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0
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419
views
News: Online course Python Machine Learning in Biology, November 16, 2023
machine-learning python course
updated 6 months ago by 43k • written 6 months ago by • 0
0
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0
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279
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News: Online course: Spatial Omics in R/Bioconductor
R Spatial-Omics Bioconductor tidyverse transcriptomics
updated 12 weeks ago by 43k • written 12 weeks ago by ★ 2.5k
0
votes
0
replies
793
views
News: Do you want to improve your programming skills?
Programming Unix Bash Python
updated 11 months ago by 43k • written 4.9 years ago by ★ 2.5k
0
votes
0
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892
views
News: Programming for Biomedical Researchers @NIH, August 13-16,2019
training researchers biomedical
updated 11 months ago by 43k • written 4.9 years ago by ▴ 140
0
votes
0
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841
views
News: EMBL PhD programme applications open
phd embl
updated 11 months ago by 43k • written 4.7 years ago by 23k
0
votes
0
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503
views
News: Join Our Online Course: Incorporating Paleogenomes into Evolutionary Genomics Studies
Paleogenomics Genomics aDNA Adaptation-Genomics
updated 8 months ago by 43k • written 8 months ago by ★ 2.5k
0
votes
0
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774
views
News: EMBL Course: Circulating Tumour DNA in Clinical Applications
Liquid-biopsy Clinical-application Tumour-cells
updated 11 months ago by 43k • written 4.6 years ago by ▴ 10
0
votes
0
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553
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News: precisionFDA & Georgetown ICBI Brain Cancer Predictive Modeling Challenge Extension and New Incentive
genome
updated 11 months ago by 43k • written 4.3 years ago by ▴ 150
0
votes
0
replies
496
views
News: Course - RADseq data analysis with Stacks
RADseq Phylogenomics Stacks Population-genomics
updated 9 months ago by 43k • written 10 months ago by ★ 2.5k
0
votes
0
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199
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News: Online course: Introduction to GWAS
GWAS Imputation StatisticalPower
7 weeks ago by carlopecoraro2 ★ 2.5k
0
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1
reply
596
views
News: Getting started with R
R
updated 11 months ago by 43k • written 5.1 years ago by ★ 2.5k
0
votes
1
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1.3k
views
News: Squeezing biology out of statistics: Gene set and pathway analysis in HT data. Berlin, 11-15 March
R RNA-Seq next-gen ChIP-Seq
updated 11 months ago by 43k • written 5.3 years ago by ★ 2.5k
0
votes
0
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1.1k
views
News: 2 Python courses in Berlin
Datavis Programming Python
updated 11 months ago by 43k • written 5.9 years ago by ★ 2.5k
0
votes
0
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1.3k
views
News: Training in Creating Plots, Graphs and Maps using R @ NIH, USA, June 5 - 8, 2018
maps training r plots graphs
updated 12 months ago by 43k • written 6.0 years ago by ▴ 140
0
votes
0
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827
views
News: Training in Bioinformatics for Beginners @NIH
sequence-analysis omics training
updated 11 months ago by 43k • written 4.5 years ago by ▴ 140
0
votes
0
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290
views
News: Online expert taught RNA-Seq workshop
workshop
5 months ago by fturner ▴ 10
0
votes
0
replies
919
views
News: Cellosaurus release 31 is available
knowledgebase cell-line database
updated 11 months ago by 43k • written 4.9 years ago by ▴ 120
0
votes
0
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907
views
News: Have you used deep learning in your research? If so, contribute to the Ten Simple Rules for Deep Learning in Biology paper!
deep-learning machine-learning
updated 11 months ago by 43k • written 5.5 years ago by ▴ 50
0
votes
0
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713
views
News: IITM-EBI modelling workshop
ebi iit-madras biomodelling
updated 11 months ago by 43k • written 4.6 years ago by ▴ 10
731 results • Page 6 of 15
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Answer: RNAseq coverage vs depth for transcript isoform expression?
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C: How can I perform Differential expression analysis with just one control and one
C: How can I perform Differential expression analysis with just one control and one
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Comment: Broad and Narrow peaks by ATpoint 82k
What is your question? It's unclear.
Comment: Help with Biopython for Beginner by Joe 21k
One question before offering more solutions: are you trying to learn Python with this as an example problem, or are you trying to find the …
Answer: RNAseq coverage vs depth for transcript isoform expression? by Gordon Smyth ★ 7.2k
See the exploration of isoform precision vs read length and sequencing depth in our paper: https://doi.org/10.1093/nar/gkad1167. Our resul…
Comment: How to handle duplicated genes in TCGA data? by txema.heredia ▴ 130
Why does the tool require gene symbols and not ensembl ids? Is it retrieving information from somewhere else? If so, your best bet is to fi…
Comment: how to treat the replicates while performing WGCNA by mavy ▴ 10
Thank you so much for your response . Really appreciate it. I will try the way you mentioned and will get back if I have any query
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by hophuquy0944 • 0
i have the same error, i used high performance computer, here is my code to set memory. srun --nodes=1 --ntasks=1 --cpus-per-task=24 -…
Comment: Overlapping Ranges within Granges object by Alex Reynolds 35k
Yes, `bedmap` will perform operations on one or two BED files.
Comment: B allele frequency (BAF) by aidangcruickshank ▴ 10
Apologies for resurrecting this post, but any idea what that functions "regions" paramater takes? Would it be a GRanges object? The documen…
Comment: How to handle duplicated genes in TCGA data? by Ngrin • 0
Thanks @txema.heredia.The tool I am going to use only accepts gene symbols. This is the reason. So I cannot use ENS IDs.
Answer: Design for complex RNA-Seq experiment using Deseq2 by swbarnes2 14k
This is a rather small experiment, I don't know that you can establish a meaningful baseline for each patient with a single pre sample, and…
Comment: GG Sankey plot by LauferVA 4.2k
@bk11 i changed this comment to an answer. if you disagree please let me know. thanks for sharing your knowledge. VAL
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation by hannes.bongartz • 0
Thanks for the input. Unfortunately, that didn't help either. I appreciate any other tips. Thank you
Answer: GG Sankey plot by bk11 ★ 2.5k
You need to change your data table into a 'long' format. You can do something like this- GOs_childs_recursive <- GOs_childs_recursive …
Answer: Trimming tool by ntsopoul ▴ 60
I use Trim Galore which automatically recognizes adaptors. https://github.com/FelixKrueger/TrimGalore Here is the script I am using for…
Answer: Trimming tool by GenoMax 142k
There are plenty. `bbduk.sh` from BBMap suite (https://jgi.doe.gov/data-and-tools/software-tools/bbtools/bb-tools-user-guide/bbduk-guide/ )…
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