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News: Course - Data Visualization in R with ggplot2
R Data-Visualization ggplot2
updated 9 months ago by 43k • written 9 months ago by ★ 2.5k
38
votes
7
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2.3k
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News: 2 last seats available - 7th Berlin Summer School in NGS Data Analysis (September 4-8 in Berlin)
Transcriptomics DNA-Seq Variant-Calling RNA-Seq
9 months ago by David Langenberger 11k
9
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4
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2.5k
views
7 follow
News: fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 9 months ago by 43k • written 2.7 years ago by ★ 2.5k
0
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0
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485
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News: Course - RADseq data analysis with Stacks
RADseq Phylogenomics Stacks Population-genomics
updated 8 months ago by 43k • written 9 months ago by ★ 2.5k
0
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0
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428
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News: course - DNA METHYLATION IN ECOLOGY AND EVOLUTION
Non-Model-Organisms DNA-Methylation BS-seq
updated 8 months ago by 43k • written 9 months ago by ★ 2.5k
2
votes
0
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542
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News: Registration open for Nextflow Summit 2023, and free online Nextflow / nf-core training
nextflow
9 months ago by Marcel Ribeiro-Dantas ▴ 470
0
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0
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440
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News: 2-day Course on Introduction to Nextflow
Workflow Reproducibility Nextflow
updated 9 months ago by 43k • written 9 months ago by ★ 2.5k
0
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0
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419
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News: Physalia courses in September
Genomics R Data-Science
updated 9 months ago by 43k • written 9 months ago by ★ 2.5k
0
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0
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449
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News: Cellosaurus release 46
knowledgebase cell-line cellosaurus
10 months ago by Amos Bairoch ▴ 120
0
votes
0
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337
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News: Course - Data Manipulation and Visualization in Python
Data-Manipulation Data-Visualisation Python
updated 10 months ago by 43k • written 10 months ago by ★ 2.5k
0
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0
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499
views
News: Kindle edition of book NO LONGER available. Book available for free
Computational-Biology
10 months ago by sinha.shriprakash ▴ 20
0
votes
0
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501
views
News: Course on Generalised Linear Mixed Models in R
GLMM R Statistics Mixed-Models
updated 10 months ago by 43k • written 10 months ago by ★ 2.5k
0
votes
0
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457
views
News: Course - Network Analysis in Systems Biology with R/Bioconductor
R Systems-Biology Network-Analysis Bioconductor
updated 8 months ago by 43k • written 10 months ago by ★ 2.5k
0
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0
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375
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News: course on Reproducibility data analysis with R
R Reproducibility Git Github
10 months ago by carlopecoraro2 ★ 2.5k
38
votes
8
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1.6k
views
6 follow
News: What happens when a bioinformatician has his own genome sequenced for $300?
DNAseq DNA WGS
updated 10 months ago by 35k • written 10 months ago by 11k
4
votes
0
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644
views
News: A Practical Introduction to Single-Cell RNA-Seq Data Analysis (November 8-10, 2023 in Berlin, Germany)
NGS RNA-Seq single-cell workshop
10 months ago by David Langenberger 11k
0
votes
0
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699
views
News: Hands-On NGS Data Analysis Courses 2023
RNA-seq DNA-seq Workshop
updated 10 months ago by 43k • written 10 months ago by 11k
1
vote
0
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503
views
News: Course - Introduction to Deep Learning for biologists
Genomics Deep-Learning Python NGS
updated 10 months ago by 43k • written 10 months ago by ★ 2.5k
1
vote
0
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436
views
News: Good bioinformatics training resources
NGS
updated 10 months ago by 161k • written 10 months ago by ▴ 80
0
votes
0
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541
views
News: Generalized Linear Models (GLM) course in R
R GLM statistics
10 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
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469
views
News: course - Advanced Python programming
Python Deep-Learning Machine-Learning
updated 8 months ago by 43k • written 11 months ago by ★ 2.5k
3
votes
2
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686
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News: Participate in a NCBI/NIAID Virtual Codeathon: VCF Files for Population Genomics, Jul 31 - Aug 4, 2023
VCF SARS-CoV-2 NCBI Codeathon
11 months ago by PeterC_NCBI ▴ 410
0
votes
0
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420
views
News: Virtual Genome Annotation Workshop
annotation genome workshop
11 months ago by mia.nahom ▴ 10
0
votes
0
replies
687
views
News: Course - Longitudinal data analysis in R
Longitudinal-Data R Genomics
updated 11 months ago by 43k • written 11 months ago by ★ 2.5k
0
votes
0
replies
416
views
News: New version of ElasticBLAST (1.1.0) available from NCBI
ElasticBLAST BLAST. NCBI
11 months ago by PeterC_NCBI ▴ 410
0
votes
0
replies
382
views
News: Course - Introduction to CRISPR for Ecology and Evolution Studies
Genomics CRISPR
11 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
1.5k
views
News: GWAS course
GWAS R
updated 11 months ago by 43k • written 11 months ago by ★ 2.5k
0
votes
0
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487
views
News: Course - RNAseq data analysis with R/Bioconductor
R Tidyverse RNA-seq Bioconductor
updated 8 months ago by 43k • written 11 months ago by ★ 2.5k
0
votes
0
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442
views
News: Course - Multiplex imagine analysis/ Spatial Omics
Multiplex-Image-Analysis Spatial-Omics
updated 11 months ago by 43k • written 11 months ago by ★ 2.5k
3
votes
3
replies
1.2k
views
News: NCBI's IgBLAST version 1.21.0 is now available
IgBLAST BLAST T-Cell NCBI receptors
11 months ago by PeterC_NCBI ▴ 410
0
votes
0
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380
views
News: course- Population genomic inference from low-coverage whole-genome sequencing data
Whole-Genome-Sequencing Population-Genomics
updated 11 months ago by 43k • written 11 months ago by ★ 2.5k
0
votes
0
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391
views
News: PROGRAMMING IN R : MOVING FROM BEGINNER TO ADVANCED
Programming Training R
11 months ago by carlopecoraro2 ★ 2.5k
1
vote
0
replies
846
views
News: NCBI BLAST+ 2.14.0 release includes faster protein and translation search options
NCBI BLAST
11 months ago by PeterC_NCBI ▴ 410
0
votes
0
replies
542
views
News: Get Your Science going in 10 Minutes with the Biostar Handbook!
education biostarhandbook
updated 11 months ago by 43k • written 11 months ago by 100k
0
votes
0
replies
396
views
News: Course - Network Analysis in Systems Biology with R/Bioconductor
R Network-Analysis Bioconductor Systems-Biology
updated 11 months ago by 43k • written 12 months ago by ★ 2.5k
0
votes
0
replies
437
views
News: Course - Phylogenetic Comparative Methods in R
Comparative-Methods R Phylogenetics
updated 11 months ago by 43k • written 12 months ago by ★ 2.5k
0
votes
2
replies
1.2k
views
News: 20% Off - Next-Generation Sequencing Data Analysis: A Practical Introduction (May 3-5, 2023 in Munich, Germany)
NGS DNA-Seq variant-calling RNA-Seq workshop
12 months ago by David Langenberger 11k
1
vote
0
replies
439
views
News: Course - Statistics for biologists with R
Statistics R
12 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
482
views
News: GWAS course in June
GWAS
updated 11 months ago by 43k • written 12 months ago by ★ 2.5k
1
vote
1
reply
675
views
News: 20% Off - Bioinformatics Pipeline Development with Nextflow (May 15-17 in Leipzig, Germany)
NGS nextflow RNAseq pipelines DNAseq
12 months ago by David Langenberger 11k
0
votes
0
replies
463
views
News: Single-cell RNAseq with R/Bioconductor course
scRNAseq Bioconductor R
updated 11 months ago by 43k • written 12 months ago by ★ 2.5k
0
votes
0
replies
375
views
News: Environmental Metagenomics - 17-21 April
MAGs Metagenomics
updated 12 months ago by 43k • written 12 months ago by ★ 2.5k
1
vote
0
replies
456
views
News: Announcing the 3rd round of the Nextflow and nf-core mentorship
nf-core mentorship nf_core nextflow
updated 12 months ago by 43k • written 12 months ago by ▴ 470
1
vote
0
replies
437
views
News: New open access publication on ElasticBLAST in BMC Bioinformatics
NCBI ElasticBLAST BLAST
13 months ago by PeterC_NCBI ▴ 410
0
votes
0
replies
444
views
News: Pangenomics course in April!
Pangenomics Prokaryotic-Genomics
13 months ago by carlopecoraro2 ★ 2.5k
1
vote
0
replies
617
views
News: Talk from Aaron Lun on Orchestrating Single-Cell Analysis With Bioconductor
scrna-seq
updated 13 months ago by 43k • written 13 months ago by 82k
0
votes
0
replies
453
views
News: Cellosaurus release 45 is available
knowledgebase cell-line
updated 10 months ago by 43k • written 13 months ago by ▴ 120
0
votes
0
replies
403
views
News: Virtual RAD-seq Analysis Workshop!
workshops popgen genomics rad-seq
13 months ago by mia.nahom ▴ 10
0
votes
0
replies
748
views
News: The Canadian Bioinformatics Workshops are back for summer 2023
CBW training workshop
13 months ago by bioinformatics.ca • 0
0
votes
0
replies
415
views
News: ISMB-affiliated virtual tutorial on Neo4j/Cypher for life sciences
neo4j cypher graph knowledge
13 months ago by Stephen • 0
1,000 results • Page 4 of 20
Recent Votes
Comment: Ideal PC configurations and operating system for bioinformatics laboratory
Comment: Ideal PC configurations and operating system for bioinformatics laboratory
Comment: Convert SAM to BAM
Comment: Should I use unpaired reads from trimmomatic
Answer: Should I use unpaired reads from trimmomatic
A: Mean Variance Relationship single cell RNA-Seq Data
Answer: Blasting two protein sequences vs two nucleotide sequences
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Commentator to GenoMax 141k
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Recent Replies
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix by BioinfGuru ★ 1.7k
Hi, Just thought I'd share this code snippet here for when each file contains multiple samples. I tried using lapply (as suggested by Ram)…
Comment: Low mapping rate with Salmon by i.sudbery 19k
Take your STAR alignment and sum all the counts for each gene. You can either do this by providing an annotation to STAR, or by running fea…
Comment: How to convert plink files to Hapmap Format by bk11 ★ 2.4k
If you run your data with plink 2.0, you will have ERRCODE column in your result file showing the reason behind "NA" p-value. https://www.b…
Comment: genome assembly records not present in assembly_summary.txt by sapuizait ▴ 10
jesus its in the Genbank file and I was looking at the refseq! I m such a moron - thanks for pointing it out -sorry about that :(
Comment: ScRNA data question by bk11 ★ 2.4k
I wonder how the `Vlnplots` will look if you normalize the data using `NormalizeData()` function in `Seurat`. The flat line in your plot ar…
Comment: Low mapping rate with Salmon by GenoMax 141k
> Does that mean that the reads that are not mapped to my trascriptome are not exons/coding genes? Reads are likely aligning in regions wh…
Comment: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File? by cmdcolin ★ 3.8k
the gencode link is broken now but here is a back up of that blogpost on archive https://web.archive.org/web/20130618221342/http://gencodeg…
Comment: Low mapping rate with Salmon by Patadu94 • 0
I'll try to make the decoy file again but I remember you also told me that it is only recommended and not mandatory for running `salmon`. I…
Comment: Low mapping rate with Salmon by Patadu94 • 0
For doing this, should I just look at the log.out.file?
Answer: Heatmap and rna-seq by pinheirofabiano ▴ 10
install.packages("pheatmap") library(pheatmap) setwd("/Users/data_analysis/results") data <- read.table(file…
Comment: Low mapping rate with Salmon by Patadu94 • 0
Thanks for the link GenoMax. But I was wondering, should not alignment and mapping have a similar rate and thus be correlated? In my case I…
Answer: Create a new bed file with all pairwise combinations between two other bed files by Pierre Lindenbaum 161k
bedtools intersect \ -a <(sort -t $'\t' -k1,1 -k2,2n A.bed) \ -b <(awk '{X=250000;P=int($2);printf("%s\t%d\…
Comment: Create a new bed file with all pairwise combinations between two other bed files by J • 0
The command lines I wrote out for you are the ones I actually used. My original reference to bedtools intersect was because I assumed the b…
Comment: ScRNA data question by starswillfade ▴ 10
I just thought it was weird that considering each dot is a cell their expressions were all on a single line instead of being spread out lik…
Comment: ScRNA data question by starswillfade ▴ 10
![enter image description here][1] I am already using Seurat V5 I think. I am using SCTransform as it was recommended by the seurat page. I…
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