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905 results • Page
6 of 19
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0
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replies
1.3k
views
News:
Training in Metagenomics Data Analysis @ NIH, March 12-15,2019
Metagenomics
Analysis
Training
updated 11 months ago by
Ram
43k • written 5.3 years ago by
AABI
▴ 140
2
votes
0
replies
1.3k
views
News:
Registrations open: Engaging Researchers in Good Data Management - 15th November 2017, Cambridge, UK
conference
research
life-sciences
updated 11 months ago by
Ram
43k • written 6.6 years ago by
Sergio Martínez Cuesta
▴ 230
0
votes
0
replies
1.3k
views
News:
Hands-On Workshop - Intro to NGS Data Analysis - only 2 free seats left
NGS
RNA-Seq
DNA-Seq
updated 11 months ago by
Ram
43k • written 5.4 years ago by
David Langenberger
11k
1
vote
0
replies
1.3k
views
News:
Population Genomics course online
R
SNP
next-gen
updated 11 months ago by
Ram
43k • written 4.1 years ago by
carlopecoraro2
★ 2.5k
1
vote
1
reply
1.3k
views
News:
New International MScProgram: Data Science and Information Technologies (DSIT) from the University of Athens [New Application Deadline 6 Aug 18]
studies
data-science
updated 11 months ago by
Ram
43k • written 5.8 years ago by
IV
★ 1.3k
6
votes
4
replies
1.3k
views
News:
Course online - Comparative Genomics
assembly
genome
next-gen
alignment
updated 11 months ago by
Ram
43k • written 4.0 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
1.3k
views
News:
Course: Bayesian data analysis using brms and RStan in March 2019, Berlin, Germany
Statistics
STAN
BAYESIAN
updated 11 months ago by
Ram
43k • written 5.4 years ago by
carlopecoraro2
★ 2.5k
1
vote
1
reply
1.3k
views
News:
Ensembl Perl API course, April 2018
course
api
ensembl
perl
training
updated 11 months ago by
Ram
43k • written 6.3 years ago by
Emily
23k
1
vote
0
replies
1.3k
views
News:
International Society of Computational Biology - SCS 2017
genome
genomics
next-gen-sequencing
updated 11 months ago by
Ram
43k • written 7.1 years ago by
ISCB-SC
▴ 80
0
votes
0
replies
1.3k
views
News:
Training in Molecular Modeling and Molecular Dynamics @NIH, USA, June 26-29, 2018
cloud-computing
molecular-dynamics
modeling
updated 11 months ago by
Ram
43k • written 6.0 years ago by
AABI
▴ 140
0
votes
0
replies
1.3k
views
News:
Inbix'17: Indian Conference on Bioinformatics 2017
systems-biology
NGS
algorithm
updated 11 months ago by
Ram
43k • written 6.6 years ago by
Samarth Kulshrestha
▴ 280
2
votes
0
replies
1.3k
views
News:
Introduction to genome-wide association studies (GWAS)
Unix
GWAS
R
updated 11 months ago by
Ram
43k • written 4.3 years ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
1.3k
views
News:
Squeezing biology out of statistics: Gene set and pathway analysis in HT data. Berlin, 11-15 March
R
RNA-Seq
next-gen
ChIP-Seq
updated 11 months ago by
Ram
43k • written 5.3 years ago by
carlopecoraro2
★ 2.5k
3
votes
5
replies
1.3k
views
News:
Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl
GTF
updated 7 months ago by
alejandrogzi
▴ 120 • written 17 months ago by
dlaehnemann
▴ 30
0
votes
0
replies
1.3k
views
News:
Strand Life Sciences Announces the Release of Strand NGS v3.1 at ASHG 2017
RNA-Seq
updated 11 months ago by
Ram
43k • written 6.5 years ago by
Genomics
▴ 70
2
votes
0
replies
1.3k
views
News:
BIOINFORMATICS SERVICES PROVIDER - BIO KNOWLEDGE LAB, S.L.
bioinformatics-services
updated 11 months ago by
Ram
43k • written 5.6 years ago by
bkl
▴ 20
2
votes
0
replies
1.3k
views
News:
Scalable and Reproducible Structural Bioinformatics Workshop & Hackathon 2018
Jupyter-Notebook
structural-bioinformatics
updated 11 months ago by
Ram
43k • written 6.2 years ago by
pwrose.ucsd
▴ 50
4
votes
2
replies
1.3k
views
News:
Hands-On Workshop: How to use bisulfite-treated sequencing to study DNA methylation (BS-Seq, Bisulfite-Seq, WGBS)
Workshop
methylation
bisulfite
updated 11 months ago by
Ram
43k • written 4.6 years ago by
Lars
★ 1.0k
0
votes
0
replies
1.3k
views
News:
Comparative Genomics Workshop in Berlin (1-5 October 2018)
genome
assembly
next-gen
updated 11 months ago by
Ram
43k • written 6.2 years ago by
carlopecoraro2
★ 2.5k
3
votes
2
replies
1.3k
views
News:
Genome Informatics meeting software list
meetings
genomics
informatics
software
updated 11 months ago by
Ram
43k • written 6.5 years ago by
Sean Davis
26k
0
votes
0
replies
1.3k
views
News:
Course: Variant effect prediction, 31th October - 3th November 2017
RNA-Seq
updated 11 months ago by
Ram
43k • written 6.7 years ago by
si.vanheel-vauhkala
• 0
2
votes
0
replies
1.3k
views
News:
April Galaxy News: UseGalaxy.org gets siblings; GCC Deadlines; GCCBOSC Childcare...
bosc
galaxy
events
updated 11 months ago by
Ram
43k • written 6.1 years ago by
Dave Clements
▴ 610
0
votes
0
replies
1.3k
views
News:
Course_Advanced R Programming (Berlin, 25-29 June 2018 )
R
Programming
updated 11 months ago by
Ram
43k • written 6.5 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
1.3k
views
News:
Epigenomics Workshop. 28th May - 1st June 2018. Berlin (Germany)
Epigenomics
next-gen
RNA-Seq
ChIP-Seq
updated 11 months ago by
Ram
43k • written 6.2 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
1.3k
views
News:
Course: Applied Statistics and Bioinformatics with R and Bioconductor. (Berlin, 22-26 January 2018)
Statistics
R
updated 11 months ago by
Ram
43k • written 6.5 years ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
1.3k
views
News:
Call for abstracts (deadline October 14) and registration (early bird till October 31): Conference on Systems Epigenetics: Towards Precision Cancer M…
synthetic-biology
systems-medicine
epigenetics
updated 11 months ago by
Ram
43k • written 6.0 years ago by
per.moerland
▴ 10
3
votes
0
replies
1.3k
views
News:
Nextflow Training Course
Pipeline
Workflow
NEXTFLOW
updated 11 months ago by
Ram
43k • written 4.6 years ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
1.3k
views
News:
Bioinformatic Analysis of Next Generation Sequencing Data @NIH
training
RNA-Seq
next-gen
updated 11 months ago by
Ram
43k • written 5.2 years ago by
AABI
▴ 140
1
vote
0
replies
1.3k
views
News:
Pan-Structural Variation hackathon in the Cloud (Remote hackathon)
structural-variants
sequencing
updated 10 months ago by
Ram
43k • written 3.7 years ago by
Medhat
9.7k
0
votes
0
replies
1.3k
views
News:
Programming for Biomedical Researchers @NIH, USA, Nov 28-Dec 1, 2017
reseachers
program
training
updated 11 months ago by
Ram
43k • written 6.5 years ago by
AABI
▴ 140
0
votes
0
replies
1.3k
views
News:
Training in Bioinformatics for Beginners @NIH, June 11-14,2019
data-analysis
omics
ngs
biomedical
training
updated 11 months ago by
Ram
43k • written 5.1 years ago by
AABI
▴ 140
0
votes
0
replies
1.3k
views
News:
Training in Advanced Transcriptomics (RNASeq) Analysis @ NIH, USA
RNA-Seq
training
snps
updated 11 months ago by
Ram
43k • written 6.0 years ago by
AABI
▴ 140
1
vote
0
replies
1.3k
views
News:
First near-complete assembly of the bread wheat genome, *Triticum aestivum* - check data/compute resources used
wheat
genome
updated 11 months ago by
Ram
43k • written 6.5 years ago by
GenoMax
142k
3
votes
0
replies
1.3k
views
News:
Course on Programming for Evolutionary Biology
Evolution
R
genome
Python
updated 11 months ago by
Ram
43k • written 5.4 years ago by
Chris Fields
★ 2.2k
0
votes
0
replies
1.3k
views
News:
STACKS Workshop in Berlin
RADseq
SNP
updated 11 months ago by
Ram
43k • written 6.0 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
1.3k
views
News:
Training in Creating Plots, Graphs and Maps using R @ NIH, USA, June 5 - 8, 2018
maps
training
r
plots
graphs
updated 11 months ago by
Ram
43k • written 6.0 years ago by
AABI
▴ 140
8
votes
0
replies
1.3k
views
News:
Final Call - Hands-On RNA-Seq Data Analysis Workshop - only 2 seats left
data-analysis
RNA-Seq
workshop
updated 11 months ago by
Ram
43k • written 4.8 years ago by
David Langenberger
11k
0
votes
0
replies
1.3k
views
News:
OpenSSH client/server now natively available (in beta) in Windows 10
openssh
windows-10
updated 11 months ago by
Ram
43k • written 6.4 years ago by
GenoMax
142k
2
votes
0
replies
1.3k
views
News:
Mendel,MD: A user-friendly open-source web tool for analyzing WES and WGS in the diagnosis of patients with Mendelian disorders
variant-prioritization
mendelian-disorders
updated 11 months ago by
Ram
43k • written 6.9 years ago by
Raony Guimarães
★ 1.4k
0
votes
0
replies
1.3k
views
News:
Training in Variant Analysis @NIH, USA, Feb 27 - Mar 2, 2018
analysis
variant-analysis
training
technology
updated 11 months ago by
Ram
43k • written 6.3 years ago by
AABI
▴ 140
0
votes
0
replies
1.2k
views
News:
Workshop: Data analysis in HT biology using R (3 places left)
next-gen
R
RNA-Seq
updated 11 months ago by
Ram
43k • written 7.1 years ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
1.2k
views
News:
There is still time to find "hidden treasure" in the precisionFDA challenge!
next-gen-sequencing
updated 11 months ago by
Ram
43k • written 6.7 years ago by
patriciareneecarter
▴ 90
3
votes
1
reply
1.2k
views
News:
UniProt: Change of FT and CC section in UniProtKB text format
uniprot
protein
updated 11 months ago by
Ram
43k • written 4.6 years ago by
Elisabeth Gasteiger
★ 2.4k
0
votes
0
replies
1.2k
views
News:
R courses in Berlin
next-gen
R
SNP
updated 11 months ago by
Ram
43k • written 6.0 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
1.2k
views
News:
EMBL Course: Quantitative Proteomics: Strategies and Tools to Probe Biology
Data-analysis
Proteomics
updated 11 months ago by
Ram
43k • written 4.5 years ago by
EMBL Events
▴ 10
0
votes
0
replies
1.2k
views
News:
Course: Epigenomic Data Analysis. 28th May - 1st June 2018. Berlin (Germany)
R
next-gen
RNA-Seq
ChIP-Seq
updated 11 months ago by
Ram
43k • written 6.3 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
1.2k
views
News:
Training in Metagenomics Data Analysis @NIH, USA, June 12 - 15, 2018
data-analysis
training
metagenomics
updated 11 months ago by
Ram
43k • written 6.0 years ago by
AABI
▴ 140
4
votes
1
reply
1.2k
views
News:
Bioinformatics Workflows with Nextflow
Netflow
reproducibility
Workflows
updated 11 months ago by
Ram
43k • written 4.4 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
1.2k
views
News:
Variant Analysis, Bioinformatics Prerequisites, & Genome Browser workshops at UC Davis
training
class
workshop
updated 11 months ago by
Ram
43k • written 5.8 years ago by
nikhil.ashok.joshi
▴ 10
0
votes
0
replies
1.2k
views
News:
3 Days Industrial Training on Genomics BIG DATA Analytics
genome
NGS
RNA-Seq
sequencing
updated 11 months ago by
Ram
43k • written 7.0 years ago by
piyushkumartiwari
• 0
905 results • Page
6 of 19
Recent Votes
Comment: GRCh38.gmap file
Answer: GRCh38.gmap file
Answer: GRCh38.gmap file
Answer: Design matrix Differential expression analysis
A: PCA plot from read count matrix from RNA-Seq
A: PCA plot from read count matrix from RNA-Seq
Answer: Design matrix Differential expression analysis
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Recent Replies
Comment: Design matrix Differential expression analysis
by
Gordon Smyth
★ 7.1k
> When is it recommended to use the design <- cbind(Intercept=1,Group=c(-1,-1,-1,1,1,1)) It is not recommended. No such code appears anywh…
Comment: GRCh38.gmap file
by
lorena9132
▴ 10
Hi Mathew, The .txt files provided in the link differ from the .gmap files, but after several attempts, I succeeded in generating the .gma…
Answer: GRCh38.gmap file
by
Mathew
▴ 20
Hi, I have spent some time searching for a GRCH38 map file for you. I have found a certain publication that uses a hg38 genetic map file…
Answer: Association study using SNP data
by
Mathew
▴ 20
Hi, You asked three questions so I will attempt to help the best I can **What should be the optimal GC score cutoff** It sounds li…
Comment: Design matrix Differential expression analysis
by
SHN
▴ 40
Thank you for your explanation. I am working on the cell lines and I am investigating the effect of the treatment on the expression level, …
Answer: Issues with Mixture file when using CIBERSORTx
by
vjanve
• 0
I ran into same issue of "duplicated gene symbol(s)": 1: In CIBERSORTxFractions(sigmatrix = sigmatrix, mixture = mixture, : 22292 dup…
Comment: creating batch colum for batch correction
by
Expert
▴ 10
Thank you for your response. These samples were collected from the same patient at different time points(day 0, 8 and 18) and these are ind…
Comment: creating batch colum for batch correction
by
ATpoint
82k
Not sure I follow. Can you first of all describe which comparisons you want to make, pretending there was no batch effect at all. Write dow…
Comment: Pindel Segmentation Fault Error
by
Ruqaiya
• 0
This the tool still problematic?
Comment: Segmentation error while using a tool
by
Ruqaiya
• 0
Thank you for the advice, i'll keep that in mind.
Comment: Segmentation error while using a tool
by
Ruqaiya
• 0
I am trying to reproduce some bioinformatics data from a research paper-[this paper][1] as i was asked to work on an MRSA bioinfo project, …
Answer: Segmentation error while using a tool
by
Mensur Dlakic
★ 27k
Most likely you didn't do anything wrong. Going by your previous post that you have only 8 GB of RAM, the most likely reason is the lack of…
Comment: Segmentation error while using a tool
by
Thanujay S
• 0
Hey @Ruqaiya! Can you please give more details on why smalt is opted here? According to what I can see, the tool has become obsolete! Why …
Comment: Extracting mutation status from MAF files - TCGA
by
Thanujay S
• 0
Hey! Can you explain the question further? What have you tried?
Comment: Downloading older version of a tool
by
Ruqaiya
• 0
I tried the 2nd option only. I got the files of older version from the author but that version isn't working on my WSL, it's showing Segmen…
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