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905 results • Page 6 of 19
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News: Free e-learning from EMBL-EBI
free-courses EMBL EBI e-learning
updated 11 months ago by 43k • written 5.9 years ago by ★ 4.0k
1
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4
replies
2.0k
views
News: webserver of TCGA data www.tcgaportal.org
genome RNA-Seq TCGA gene
updated 11 months ago by 43k • written 5.9 years ago by ▴ 40
1
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0
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309
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News: Course - Introduction to CRISPR
CRISPR Evolution GenomeEditing
8 months ago by carlopecoraro2 ★ 2.5k
1
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0
replies
1.1k
views
News: Course: Rstats for biologists in Berlin (LAST CALL)
R statistics biologists
updated 11 months ago by 43k • written 6.8 years ago by ★ 2.5k
1
vote
0
replies
917
views
News: Training in Advanced Transcriptomics (RNASeq) Analysis @ NIH, USA
Assembly training RNA-Seq
updated 11 months ago by 43k • written 5.7 years ago by ▴ 140
1
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0
replies
860
views
News: UniProt: Changes to Proteomes
uniprot proteome
updated 11 months ago by 43k • written 4.6 years ago by ★ 2.4k
1
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0
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415
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News: Online Training - Bioinformatics Pipeline Development with Nextflow (November 15-17, 2023)
nextflow automation pipeline development
7 months ago by David Langenberger 11k
1
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0
replies
834
views
News: Utrecht Bioinformatics Center: online seminars
DNA-damage Utrecht epigenomics
updated 11 months ago by 43k • written 3.9 years ago by ▴ 230
1
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0
replies
509
views
News: Course - Introduction to Deep Learning for biologists
Genomics Deep-Learning Python NGS
updated 10 months ago by 43k • written 10 months ago by ★ 2.5k
1
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0
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1.0k
views
News: BBSRC (UK funding body) Review of data intensive biology in the UK
questionnaire UK
updated 11 months ago by 43k • written 4.9 years ago by 19k
1
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0
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1.4k
views
News: Advanced Sequencing Technologies & Bioinformatics Analysis Course at CSHL: November 3 - 15, 2020
course sequencing workshop
updated 11 months ago by 43k • written 4.3 years ago by 20k
1
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0
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186
views
News: Landscape Genomics course in Switzerland
LFMM Landscape-Genomics Sambada R Local-Adaptation
2 days ago by carlopecoraro2 ★ 2.5k
1
vote
0
replies
623
views
News: Calling Data Scientists and Bioinformaticians for the NHLBI Big Data Challenge Competition
Big-Data Challenge Competition
updated 11 months ago by 43k • written 4.2 years ago by ▴ 10
1
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2
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2.4k
views
News: Workshop: Metagenomics, Metatranscriptomics, and multi'omics for microbial community studies (9-13 April 2018 in Berlin)
Metatranscriptomics Metagenomics
updated 11 months ago by 43k • written 6.2 years ago by ★ 2.5k
1
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0
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1.1k
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News: Crowdsourcing the Advancement of Microbiome Research: precisionFDA & Mosaic Challenges Launched!
next-gen challenge metagenomics
updated 11 months ago by 43k • written 6.2 years ago by ▴ 40
1
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0
replies
1.3k
views
News: Pan-Structural Variation hackathon in the Cloud (Remote hackathon)
structural-variants sequencing
updated 10 months ago by 43k • written 3.7 years ago by 9.7k
1
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0
replies
1.6k
views
News: Machine Learning and Visualization of High-Throughput Biomedical Data
next-gen-sequencing gene
updated 11 months ago by 43k • written 5.9 years ago by ▴ 10
1
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0
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749
views
News: Check out precision FDA's Featured Expert Blog from Dr. Charles Eaton
biomarker Dupytrens genetic crowd-sourcing
updated 11 months ago by 43k • written 5.2 years ago by ▴ 60
1
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0
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1.3k
views
News: First near-complete assembly of the bread wheat genome, *Triticum aestivum* - check data/compute resources used
wheat genome
updated 11 months ago by 43k • written 6.5 years ago by 142k
1
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0
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999
views
News: Genomic Data Visualization using R
R
updated 11 months ago by 43k • written 5.2 years ago by ★ 2.5k
1
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0
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2.3k
views
News: Multivariate analysis of ecological communities in R with the VEGAN package (VGNR01)
R
updated 11 months ago by 43k • written 6.1 years ago by ▴ 60
1
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0
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2.3k
views
News: The power and promise of Genome-Wide Association Studies
Meta-analysis NGS GWAS Linux R
updated 11 months ago by 43k • written 6.8 years ago by ★ 2.5k
1
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0
replies
1.2k
views
News: Workshop for Comparative genomics with a focus on structural variation
genome structural-variant
updated 11 months ago by 43k • written 5.1 years ago by 9.7k
1
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0
replies
2.2k
views
News: UniProtKB FASTA headers: Addition of NCBI taxonomy identifier
swiss-prot uniprot taxonomy fasta
updated 11 months ago by 43k • written 6.4 years ago by ★ 2.4k
1
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2
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1.8k
views
News: Course: Applied Statistics and Bioinformatics with R and Bioconductor
Statistics R Metagenomics Bioconductor
updated 11 months ago by 43k • written 6.8 years ago by ★ 2.5k
1
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2
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1.7k
views
News: NCBI Datasets - try it out!
Assembly refseq genome ncbi
updated 11 months ago by 43k • written 4.1 years ago by ★ 3.7k
1
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0
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207
views
News: Online course - Introduction to Machine Learning in R for omics data
R Omics MachineLearning StatisticalLearning
3 months ago by carlopecoraro2 ★ 2.5k
1
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1
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1.3k
views
News: New International MScProgram: Data Science and Information Technologies (DSIT) from the University of Athens [New Application Deadline 6 Aug 18]
studies data-science
updated 11 months ago by 43k • written 5.8 years ago by ★ 1.3k
1
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0
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868
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News: 7th International Conference on Artificial Intelligence and Applications (AIAPP 2020)
robot artificial-intelligence machine-learning
updated 11 months ago by 43k • written 4.5 years ago by ▴ 10
1
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0
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1.3k
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News: Bioinformatic Analysis of Next Generation Sequencing Data @NIH
training RNA-Seq next-gen
updated 11 months ago by 43k • written 5.2 years ago by ▴ 140
1
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0
replies
688
views
News: Bioconductor 3.8 Release Schedule
R bioconductor
updated 11 months ago by 43k • written 5.6 years ago by 87k
1
vote
0
replies
962
views
News: UniProtKB: Change of the annotation topic 'Enzyme regulation' to 'Activity regulation', not before Sep 12th, 2018
UniProt
updated 11 months ago by 43k • written 5.9 years ago by ★ 2.4k
1
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0
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926
views
News: Advanced R Programming
R
updated 11 months ago by 43k • written 6.1 years ago by ★ 2.5k
1
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0
replies
1.2k
views
News: Hands-on Training on Cloud Computing @ NIH, USA, April 30, 2018
analysis server ngs cloud
updated 11 months ago by 43k • written 6.1 years ago by ▴ 140
1
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0
replies
1.7k
views
News: 2018 Summer School for Computational Genomics
RNA-Seq computational-genomics
updated 11 months ago by 43k • written 6.3 years ago by ▴ 10
1
vote
1
reply
2.0k
views
News: Bioinformatics Contest 2017. Results
contest
updated 11 months ago by 43k • written 7.1 years ago by ▴ 70
1
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1
reply
210
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News: Integrated Genome Browser (IGB) Office Hours
Integrated-Genome-Browser IGB
updated 8 weeks ago by 43k • written 8 weeks ago by • 0
1
vote
0
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858
views
News: Training in Metagenomics Data Analysis @ NIH,February 10-13,2020
Metagenomics Biomedical next-gen Data-analysis
updated 11 months ago by 43k • written 4.3 years ago by ▴ 140
1
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0
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1.4k
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News: Workshop: Introduction to Linux and workflows for biologists
Assembly snp blast alignment
updated 12 months ago by 43k • written 7.2 years ago by ★ 2.5k
1
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0
replies
1.8k
views
News: Data Visualization with Python
next-gen Python
updated 11 months ago by 43k • written 5.9 years ago by ★ 2.5k
1
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0
replies
1.1k
views
News: LAST CALL: Advanced Python for Biologists.13-17 November 2017 Berlin
Python-Programming
updated 11 months ago by 43k • written 6.5 years ago by ★ 2.5k
1
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0
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1.1k
views
News: Bioinformatics for geneticists and biologists - Part funded scholarships
next-gen RNA-Seq blast Assembly
updated 11 months ago by 43k • written 6.9 years ago by ▴ 110
1
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2
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1.4k
views
News: Webinar on Diagnosis of Rare Diseases using NGS Based Multi-gene Testing- Case studies by Dr.Aparna Ganapathy on 18 Apr 2018
variant-calling rare-disease dna-seq strand-ngs
updated 11 months ago by 43k • written 6.1 years ago by ▴ 70
1
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0
replies
1.0k
views
News: Phylogenomics course in Berlin
next-gen SNP
updated 11 months ago by 43k • written 6.1 years ago by ★ 2.5k
1
vote
0
replies
888
views
News: Subchallenge 2 of the precisionFDA NCI-CPTAC Mislabeling Challenge
multiomics omics challenge
updated 11 months ago by 43k • written 5.4 years ago by ▴ 40
1
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2
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764
views
News: Ensembl reduced functionality, early March
ensembl
updated 11 months ago by 43k • written 4.3 years ago by 23k
1
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0
replies
1.3k
views
News: International Society of Computational Biology - SCS 2017
genome genomics next-gen-sequencing
updated 11 months ago by 43k • written 7.1 years ago by ▴ 80
1
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0
replies
706
views
News: Cellosaurus release 33 is available
knowledgebase cell-line
updated 11 months ago by 43k • written 4.4 years ago by ▴ 120
1
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0
replies
2.8k
views
News: Genomic Data Visualization and Interpretation Workshop
Bioconductor ggplot GenVisR RNA-Seq R
updated 11 months ago by 43k • written 6.8 years ago by ★ 2.5k
1
vote
0
replies
793
views
News: OmicsLogic Genomics Training Program starts July 23
genome dna genomics
updated 11 months ago by 43k • written 4.9 years ago by ▴ 340
905 results • Page 6 of 19
Recent Votes
Comment: GRCh38.gmap file
Answer: GRCh38.gmap file
Answer: GRCh38.gmap file
Answer: Design matrix Differential expression analysis
A: PCA plot from read count matrix from RNA-Seq
A: PCA plot from read count matrix from RNA-Seq
Answer: Design matrix Differential expression analysis
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Popular Question to psm ▴ 130
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Recent Replies
Comment: Design matrix Differential expression analysis by Gordon Smyth ★ 7.1k
> When is it recommended to use the design <- cbind(Intercept=1,Group=c(-1,-1,-1,1,1,1)) It is not recommended. No such code appears anywh…
Comment: GRCh38.gmap file by lorena9132 ▴ 10
Hi Mathew, The .txt files provided in the link differ from the .gmap files, but after several attempts, I succeeded in generating the .gma…
Answer: GRCh38.gmap file by Mathew ▴ 20
Hi, I have spent some time searching for a GRCH38 map file for you. I have found a certain publication that uses a hg38 genetic map file…
Answer: Association study using SNP data by Mathew ▴ 20
Hi, You asked three questions so I will attempt to help the best I can **What should be the optimal GC score cutoff** It sounds li…
Comment: Design matrix Differential expression analysis by SHN ▴ 40
Thank you for your explanation. I am working on the cell lines and I am investigating the effect of the treatment on the expression level, …
Answer: Issues with Mixture file when using CIBERSORTx by vjanve • 0
I ran into same issue of "duplicated gene symbol(s)": 1: In CIBERSORTxFractions(sigmatrix = sigmatrix, mixture = mixture, : 22292 dup…
Comment: creating batch colum for batch correction by Expert ▴ 10
Thank you for your response. These samples were collected from the same patient at different time points(day 0, 8 and 18) and these are ind…
Comment: creating batch colum for batch correction by ATpoint 82k
Not sure I follow. Can you first of all describe which comparisons you want to make, pretending there was no batch effect at all. Write dow…
Comment: Pindel Segmentation Fault Error by Ruqaiya • 0
This the tool still problematic?
Comment: Segmentation error while using a tool by Ruqaiya • 0
Thank you for the advice, i'll keep that in mind.
Comment: Segmentation error while using a tool by Ruqaiya • 0
I am trying to reproduce some bioinformatics data from a research paper-[this paper][1] as i was asked to work on an MRSA bioinfo project, …
Answer: Segmentation error while using a tool by Mensur Dlakic ★ 27k
Most likely you didn't do anything wrong. Going by your previous post that you have only 8 GB of RAM, the most likely reason is the lack of…
Comment: Segmentation error while using a tool by Thanujay S • 0
Hey @Ruqaiya! Can you please give more details on why smalt is opted here? According to what I can see, the tool has become obsolete! Why …
Comment: Extracting mutation status from MAF files - TCGA by Thanujay S • 0
Hey! Can you explain the question further? What have you tried?
Comment: Downloading older version of a tool by Ruqaiya • 0
I tried the 2nd option only. I got the files of older version from the author but that version isn't working on my WSL, it's showing Segmen…
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