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News: Nvidia Clara Parabricks is FREE for R&D
nvidia workflow gpu
updated 9 months ago by 2.8k • written 9 months ago by 157k
14
votes
3
replies
3.5k
views
News: Updated: Conference/Symposium/Seminar/Workshop alert 2018-2019
seminar symposium conference
updated 4 months ago by 40k • written 5.4 years ago by 5.8k
0
votes
3
replies
2.2k
views
News: Eukaryotic Metabarcoding workshop
next-gen blast alignment
updated 5 months ago by 40k • written 6.9 years ago by ★ 2.4k
3
votes
3
replies
2.2k
views
News: Innocentive Challenge: Identify Organisms From A Stream Of Dna Sequences And Get $1,000,000
ngs
updated 7 months ago by 40k • written 10.4 years ago by ▴ 830
15
votes
3
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6.6k
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News: Top Bioinformatics Contributions Of 2013
bioinformatics
updated 7 months ago by 40k • written 9.8 years ago by ★ 1.1k
9
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3
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4.6k
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News: Bioinformatics Contest 2020. Call for problems
contest
updated 4 months ago by 40k • written 4.1 years ago by ▴ 860
4
votes
3
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1.8k
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News: Proteomics and Genomics Submit your Research Journals
Research Genomics Journals Proteomics
updated 10 months ago by 40k • written 8.2 years ago by • 0
9
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3
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3.1k
views
News: New Human Genome Assembly (Grch38) Released
human-genome assembly
updated 7 months ago by 40k • written 9.8 years ago by 157k
6
votes
3
replies
2.3k
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News: Become a Professional Biinformatician in NGS, Microarray in very fair price. Register for ArrayGen training program as soon as possible to get good a…
ChIP-Seq next-gen RNA-Seq
updated 5 months ago by 40k • written 6.7 years ago by • 0
0
votes
3
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614
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News: NCBI update complete. Aspera users please update your client.
NCBI Submissions GenBank
7 months ago by PeterC_NCBI ▴ 330
5
votes
3
replies
689
views
News: March 13-16: Virtual Nextflow and nf-core training event in 5 languages
nf-core pipeline Nextflow
updated 6 months ago by ▴ 330 • written 7 months ago by 4.1k
3
votes
3
replies
3.7k
views
News: A Tale Of Next Generation Sequencing Platforms: Ion Torrent, Pacific Biosciences And Illumina Miseq
sequencing
updated 7 months ago by 40k • written 11.1 years ago by 98k
5
votes
3
replies
1.3k
views
News: Top GitHub repos for biomedicine
open-source software GitHub
updated 4 months ago by 40k • written 4.7 years ago by ▴ 50
4
votes
3
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1.8k
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News: How the strengths of Lisp-family languages facilitate building complex and flexible bioinformatics applications
ChIP-Seq RNA-Seq
updated 5 months ago by 40k • written 6.8 years ago by ▴ 350
2
votes
3
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519
views
News: NCBI Comparative Genome Viewer now allows searches for genes across aligned assemblies
Browser NCBI Alignments Genome
9 months ago by PeterC_NCBI ▴ 330
2
votes
3
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2.9k
views
News: Summer Course On Analyzing Next-Generation Sequencing Data, June 10-20, Kellog Biological Station, Michigan State University
education
updated 7 months ago by 40k • written 10.7 years ago by 98k
4
votes
3
replies
1.7k
views
News: Boston Genomics Hackathon (facilitated by NCBI)
NCBI RNA-Seq DNA-seq hackathon
updated 6 months ago by 40k • written 7.5 years ago by ▴ 330
0
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3
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1.1k
views
News: Less Than One Month Remaining until the Submission Deadline for Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel indel-calling
updated 9 months ago by 40k • written 15 months ago by ▴ 10
0
votes
3
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2.1k
views
News: Bioinformatics National Certification Examination (BINC)
BINC
updated 6 months ago by 40k • written 7.4 years ago by • 0
5
votes
3
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1.9k
views
News: Nhgri Meeting About Human Variation Analysis Live Streaming [Now Done]
next-gen exome variation
updated 7 months ago by 40k • written 11.1 years ago by 11k
4
votes
3
replies
646
views
News: You may need to cleanup duplicate NCBI BLAST nt database volumes on your system
databases NCBI BLAST
5 weeks ago by PeterC_NCBI ▴ 330
4
votes
3
replies
2.1k
views
News: India Recently Started Personal Genome Profiling, Commercially.
genome-profiling
updated 7 months ago by 40k • written 10.4 years ago by ▴ 970
2
votes
3
replies
1.9k
views
News: PDX Models: Tumor-stroma interaction
transcriptome pdx R ChIP-Seq
updated 4 months ago by 40k • written 6.2 years ago by ▴ 70
22
votes
3
replies
2.8k
views
News: Biostar: 10,000 Question Milestone
meta
updated 7 months ago by 40k • written 10.4 years ago by 98k
0
votes
3
replies
2.7k
views
News: Physalia-courses: 16S rRNA gene Metabarcoding Workshop
RNA-seq sequencing SNP gene sequence
updated 5 months ago by 40k • written 6.9 years ago by ★ 2.4k
8
votes
3
replies
1.7k
views
News: Impact of outdated gene annotations on pathway enrichment analysis
pathway-enrichment gene-ontology david go
updated 5 months ago by 40k • written 7.0 years ago by 5.1k
0
votes
3
replies
907
views
News: EMBO | EMBL Symposium: Seeing is Believing - Imaging the Molecular Processes of Life
image-analysis
updated 4 months ago by 40k • written 4.9 years ago by • 0
2
votes
3
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1.3k
views
News: Bio-On-Magnetic-Beads (BOMB): Open platform for high-throughput nucleic acid extraction and manipulation
rna-extraction dna-extraction rna-seq
updated 4 months ago by 40k • written 5.1 years ago by ▴ 20
5
votes
3
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1.4k
views
News: Bioinfo-Core Conference Call, October 17, 2017 (11 am EDT USA, local times around world)
bioinfo-core
updated 6 months ago by 40k • written 6.1 years ago by 135k
7
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3
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4.4k
views
News: Pathway Commons 2 - Search And Visualize Public Biological Pathway Information. Single Point Of Access.
api cytoscape
updated 7 months ago by 40k • written 9.9 years ago by ★ 1.2k
1
vote
3
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1.0k
views
News: 4th Berlin Summer School in NGS Data Analysis - October 5-9, 2020
NGS RNA-Seq DNA-Seq
updated 3 months ago by 40k • written 3.6 years ago by 10k
4
votes
3
replies
2.9k
views
News: -max_target_seqs 1 in NCBI standalone BLAST does not do what you think it does
blast
updated 4 months ago by 40k • written 5.0 years ago by 11k
12
votes
3
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2.3k
views
News: Google Summer of Code and Open Bioinformatics Foundation is looking for students
GSoC open-source
updated 6 months ago by 40k • written 7.6 years ago by 7.9k
0
votes
2
replies
589
views
News: The Practice of RADseq: Population Genomics Analysis with Stacks (RADS02) Early bird deadline approaching - 20th September
population-genomics radseq stacks
updated 14 days ago by ★ 1.4k • written 15 days ago by ▴ 110
2
votes
2
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2.5k
views
News: Interview Dealing with RADseq data: some tips from our instructors
NGS RADseq
updated 4 months ago by 40k • written 6.0 years ago by ★ 2.4k
1
vote
2
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545
views
News: Course: Network Analysis in R
NetworkAnalyis R
8 months ago by carlopecoraro2 ★ 2.4k
2
votes
2
replies
826
views
News: Interested in Machine Learning?
deep-learning machine-learning
updated 4 months ago by 40k • written 4.4 years ago by ★ 2.4k
3
votes
2
replies
2.5k
views
News: Samtools/htslib v1.2 released
htslib samtools bcftools
updated 6 months ago by 40k • written 8.7 years ago by 103k
2
votes
2
replies
1.3k
views
News: GeNets: a unified web platform for network-based genomic analyses
networks pathways RNA-Seq visualization
updated 4 months ago by 40k • written 5.3 years ago by ★ 5.2k
1
vote
2
replies
1.3k
views
News: Webinar on Diagnosis of Rare Diseases using NGS Based Multi-gene Testing- Case studies by Dr.Aparna Ganapathy on 18 Apr 2018
variant-calling rare-disease dna-seq strand-ngs
updated 4 months ago by 40k • written 5.5 years ago by ▴ 70
6
votes
2
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2.4k
views
News: Interested in de novo transcriptome assembly using Trinity? Check out our interview to Brian Haas
alignment RNA-Seq
updated 5 months ago by 40k • written 6.6 years ago by ★ 2.4k
4
votes
2
replies
2.9k
views
News: NCBI NOW (Next generation sequencing Online Workshop) October 13 - 23 , 2015
NCBI DNA-Seq NGS RNA-Seq
updated 6 months ago by 40k • written 8.0 years ago by ★ 2.2k
11
votes
2
replies
3.5k
views
News: Coursera: Computational Molecular Evolution
course
updated 7 months ago by 40k • written 10.4 years ago by 157k
2
votes
2
replies
2.0k
views
News: Briefings In Bioinformatics International, Interdisciplinary, Multi-Level Bioinformatics Training And Education
education
updated 7 months ago by 40k • written 10.1 years ago by 157k
1
vote
2
replies
943
views
News: Sage Bionetworks is seeking researchers and data scientists to participate in software user research!
research software
updated 4 months ago by 40k • written 4.6 years ago by ▴ 30
2
votes
2
replies
334
views
News: NCBI BLAST+ 2.14.1 Now Available
NCBI BLAST
5 weeks ago by PeterC_NCBI ▴ 330
2
votes
2
replies
2.1k
views
News: 2017 NIH SUMMER INTERNSHIP PROGRAM IN BIOMEDICAL RESEARCH (SIP)--applications open
NIH training
updated 5 months ago by 40k • written 6.9 years ago by 26k
0
votes
2
replies
1.1k
views
News: :: FINAL CALL :: Next-Generation Sequencing Data Analysis: A Practical Introduction (December 12-14, 2022 in Munich, Germany)
rnaseq dnaseq sequencing ngs workshop
10 months ago by David Langenberger 10k
2
votes
2
replies
1.8k
views
News: Introducing a new Instructor of Physalia-Courses: Dr. January Weiner
next-gen SNP sequence
updated 5 months ago by 40k • written 6.8 years ago by ★ 2.4k
4
votes
2
replies
270
views
News: Standalone NCBI ClusteredNR database now available for download
ClusteredNR NCBI standalone BLAST
28 days ago by PeterC_NCBI ▴ 330
1,000 results • Page 3 of 20
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Answer: ClusterProfiler : What is GeneRatio and BgRatio?
Prediction of Ribosomal RNA Genes Using RNAmmer Software
Answer: tensorQTL interaction issue
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Recent Replies
Comment: How to get sample names and genotype for SNP in multi-sample VCF file by Kevin Blighe 86k
It is difficult for me to comment, as I am not too informed on your IT infrastructure. What I can say is that it would be better to run the…
Answer: Converting from BED to SAF/GFF by alejandrogzi ▴ 30
I recently developed [bed2gff](https://github.com/alejandrogzi/bed2gff) to quickly convert .bed files to a gff3 format, a tool written in R…
Comment: Convert bed12 to GFF by alejandrogzi ▴ 30
Now there is [bed2gff](https://github.com/alejandrogzi/bed2gff), if you want to work only with a gff file!
Comment: Converting different annotation file formats (GTF/GFF/BED) to each other by alejandrogzi ▴ 30
now there is also [bed2gff](https://github.com/alejandrogzi/bed2gff) if you want to convert .bed files to .gff3 files!
Answer: How Do I Convert From Bed Format To Gff Format? by alejandrogzi ▴ 30
I recently developed [bed2gff](https://github.com/alejandrogzi/bed2gff) to quickly convert .bed files to a gff3 format, a tool written in R…
Answer: tensorQTL interaction issue by Solal • 0
Writing a solution for anyone interested. The issue stems from a dosage error, some variant contains only heterozygous individuals and no h…
Answer: The Biostar Handbook. A bioinformatics e-book for beginners. by Qboy • 0
Great book! I love using it to help my mentees to learn bioinformatics better. It would be also fantastic to compile all other necessary Pr…
Comment: Rockhoppper - Suspiciously low percentage of perfectly aligned reads by langziv ▴ 50
Thanks. I'll try.
Comment: How to get sample names and genotype for SNP in multi-sample VCF file by avelarbio46 ▴ 30
Hi! I'm trying to parallelize your code (to run on a bunch of files), but it is not working because of multiple processes spawning. Do you …
Comment: Rockhoppper - Suspiciously low percentage of perfectly aligned reads by GenoMax 135k
> so I don't think the genome size is available. Perhaps not for your specific strain but plenty of other Kpn genomes are available and th…
Comment: Kimura% of calcDivergenceFromAlign output by 睿紘 • 0
For additional information, "Coverage for each repeat class and divergence (Kimura)" is also the result from calcDivergenceFromAlign.pl
Comment: Rockhoppper - Suspiciously low percentage of perfectly aligned reads by langziv ▴ 50
By the way, I run Rockhopper on the untrimmed files, and the full match percentage grew to 20%-30%, and there are 1552 transcripts in the u…
Comment: Rockhoppper - Suspiciously low percentage of perfectly aligned reads by langziv ▴ 50
Here are the total bases in 4 fastq files (after adapter removal): 1,027,852,411, 1,041,895,083, 1,121,786,520, 1,299,721,929. I just rem…
Comment: Understanding mother and father alleles in VCF file by c. • 0
actually they didn't tell me which relatives were from mother side and which from father side, you are right. But how can you find related …
Comment: Rockhoppper - Suspiciously low percentage of perfectly aligned reads by GenoMax 135k
Correct. Data that went into the assembly.
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