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906 results • Page 3 of 19
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News: Ensembl Perl API course, April 2018
course api ensembl perl training
updated 11 months ago by 43k • written 6.3 years ago by 23k
0
votes
1
reply
619
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News: Bioinformatics Training Program
next-gen-sequencing genome RNA-Seq
updated 11 months ago by 43k • written 4.8 years ago by • 0
0
votes
1
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1.6k
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News: Trinity Workshop: De novo Transcriptome Assembly, Annotation, and Downstream Expression Studies. Berlin 12-16 June (4 places left)
next-gen Assembly RNA-Seq
updated 11 months ago by 43k • written 7.1 years ago by ★ 2.5k
1
vote
1
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994
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News: The GDC Legacy Archive is retiring soon.
genomic-data-commons tcga gdc
updated 21 hours ago by ▴ 40 • written 14 months ago by ★ 1.2k
3
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1
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1.4k
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News: Ensembl in Google Summer of Code
Ensembl Internship Google-Summer-of-Code GSOC
updated 12 months ago by 43k • written 7.1 years ago by 23k
0
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1
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383
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News: Online Course - Genomic Prediction
Genomic-Prediction Selective-Breeding
updated 4 months ago by 43k • written 4 months ago by ★ 2.5k
0
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1
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1.8k
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News: Spatio-temporal Transcriptome of LncRNAs in Human Brain
Parkinson lncRNA Alzheimer brain transcriptome
updated 11 months ago by 43k • written 6.8 years ago by ▴ 860
6
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1
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2.9k
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News: "Oxford University Press to Publish NAR Genomics and Bioinformatics"
journal
updated 11 months ago by 43k • written 5.0 years ago by 161k
3
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1
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1.5k
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News: Bioconductor 2017 Conference, Boston, July 26-28
R conference Bioconductor
updated 11 months ago by 43k • written 7.1 years ago by 26k
3
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1
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844
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News: PrecisionFDA has won a FedHealth IT award!!
platform cloud-based precision-medicine award
updated 11 months ago by 43k • written 4.9 years ago by ▴ 150
0
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1
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652
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News: International Conference on Renewable & Non-Renewable Energy
next-gen
updated 11 months ago by 43k • written 6.0 years ago by • 0
0
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1
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992
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News: Data visualization with Python
snp next-gen sequencing
updated 11 months ago by 43k • written 5.5 years ago by ★ 2.5k
0
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1
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1.4k
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News: Webinar on Leukocyte immunobiology by Dr. Mario Deng, Professor of Medicine, UCLA on 9 Aug 2017, 8am PST
UCLA transcriptome-analysis RNA-Seq Strand-NGS
updated 11 months ago by 43k • written 6.8 years ago by ▴ 70
0
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1
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2.4k
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News: Hands-on training in Bioinformatics and Biomedical Data Science
NGS training
updated 11 months ago by 43k • written 5.6 years ago by ▴ 10
0
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1
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194
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News: Online NGS Training Program
next-gen-sequencing RNA-Seq ChIP-Seq
updated 11 months ago by 43k • written 4.8 years ago by • 0
0
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1
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1.6k
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News: Course: RADseq data analysis in Berlin (4-8/12/17). LAST CALL
STACKs RADseq
updated 11 months ago by 43k • written 6.5 years ago by ★ 2.5k
0
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1
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1.1k
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News: New Alexa skill provides voice-based access to Protein Data Bank data
protein-structure pdb
updated 11 months ago by 43k • written 6.5 years ago by • 0
2
votes
1
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469
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News: Successful NCBI NIAID Codeathon on VCF Files in SARS-CoV-2 Genomics
NCBI Codeathon
updated 7 months ago by 10k • written 7 months ago by ▴ 410
0
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1
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1.3k
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News: Squeezing biology out of statistics: Gene set and pathway analysis in HT data. Berlin, 11-15 March
R RNA-Seq next-gen ChIP-Seq
updated 11 months ago by 43k • written 5.3 years ago by ★ 2.5k
0
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1
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849
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News: FINAL CALL: Online Course - A Practical Introduction to NGS Data Analysis - October 23-25, 2023
DNA-seq Workshop RNA-seq
6 months ago by David Langenberger 11k
0
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1
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592
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News: Getting started with R
R
updated 11 months ago by 43k • written 5.1 years ago by ★ 2.5k
0
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1
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792
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News: Advanced R Programming Course
R
updated 11 months ago by 43k • written 6.0 years ago by ★ 2.5k
0
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1
reply
1.2k
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News: FINAL CALL - Workshop - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (November 8-10, 2023 in Berlin)
workshop RNA-Seq scRNA-Seq single-cell
6 months ago by David Langenberger 11k
0
votes
1
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962
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News: FINAL CALL: RNA-Seq Data Analysis Workshop (March 11 - 14, 2024 in Berlin, Germany)
NGS RNA-Seq Workshop
12 weeks ago by David Langenberger 11k
0
votes
1
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1.1k
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News: Google Summer of Code 2020 announced for mentor organisations
internship GSoC
updated 11 months ago by 43k • written 4.4 years ago by 23k
0
votes
1
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1.6k
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News: :: FINALL CALL :: RNA-Seq Data Analysis Workshop for Beginners - Registraion to be closed
NGS RNA-Seq Training
updated 11 months ago by 43k • written 4.4 years ago by 11k
3
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1
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1.2k
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News: UniProt: Change of FT and CC section in UniProtKB text format
uniprot protein
updated 11 months ago by 43k • written 4.6 years ago by ★ 2.4k
0
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1
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1.0k
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News: Help GIAB manually curate benchmark SVs!
giab
updated 11 months ago by 43k • written 6.0 years ago by 161k
2
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1
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1.6k
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News: BIOSG17 Workshop on High Throughput Computing in Bioinformatics/Biomedicine using OSG
Workshop OSG Biomedicine HTC
updated 11 months ago by 43k • written 6.7 years ago by ▴ 10
2
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1
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1.1k
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News: PrecisionFDA and NCI-CPTAC Mislabeling Challenge is Launching on September 24th!
precision-medicine NCI FDA proteomics.RNA
updated 11 months ago by 43k • written 5.6 years ago by ▴ 150
0
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1
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1.5k
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News: Live Webinar on RNA-Seq Data Analysis on 28 Feb 2018
splice-variants RNA-Seq alignment Strand-NGS
updated 11 months ago by 43k • written 6.2 years ago by ▴ 70
0
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1
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818
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News: LAST CALL: Online Course - A Practical Introduction to NGS Data Analysis (February 28 - March 1, 2024)
NGS Online-Workshop
updated 3 months ago by 43k • written 3 months ago by 11k
3
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1
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6.8k
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News: LinkedOmics - a web portal for TCGA/CPTAC data
TCGA cptac cancer
updated 11 months ago by 43k • written 6.4 years ago by 142k
1
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1
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1.3k
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News: New International MScProgram: Data Science and Information Technologies (DSIT) from the University of Athens [New Application Deadline 6 Aug 18]
studies data-science
updated 11 months ago by 43k • written 5.8 years ago by ★ 1.3k
3
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1
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2.3k
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News: NCBI : New API Keys for the E-utilities
pubmed eutils ncbi api
updated 11 months ago by 43k • written 6.5 years ago by 161k
2
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1
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2.0k
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News: Genomic Data Visualization and Interpretation Workshop
next-gen R genome RNA-Seq
updated 11 months ago by 43k • written 6.9 years ago by ★ 2.5k
0
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1
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2.3k
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News: Webinar on Unique Molecular Identifier (UMI)-powered Ultra-sensitive Variant Calling using Strand NGS - Case Study
Strand-NGS NGS RNA-Seq UMI dna-seq
updated 11 months ago by 43k • written 6.5 years ago by ▴ 70
4
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1
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1.9k
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News: Bioinformatics Contest 2018
contest
updated 11 months ago by 43k • written 6.3 years ago by ▴ 40
2
votes
1
reply
880
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News: Gene set enrichment and pathway analysis in HT data
next-gen-sequencing RNA-Seq
updated 11 months ago by 43k • written 5.2 years ago by ★ 2.5k
2
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1
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1.7k
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News: Meet Dr. Giovanni Marco Dall'Olio
NGS training RNA-Seq
updated 11 months ago by 43k • written 5.1 years ago by 11k
0
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1
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280
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News: FINAL CALL: 8th Berlin Summer School in NGS Data Analysis - Only a few last places available
DNA-seq variant-calling RNA-seq illumina transcriptomics
4 days ago by David Langenberger 11k
1
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1
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1.7k
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News: 2nd Berlin Summer School in NGS Data Analysis 2018
DNA-Seq Workshop NGS RNA-Seq
updated 11 months ago by 43k • written 6.1 years ago by 11k
0
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1
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327
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News: Reminder: NCBI ClinVar XML update to accommodate somatic variants coming Jan 29, 2024
SNP XML ClinVar NCBI
3 months ago by PeterC_NCBI ▴ 410
0
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1
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624
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News: EMBL-EBI virtual course | Introduction to RNA-seq and functional interpretation
RNA-seq
updated 7 months ago by 43k • written 7 months ago by • 0
1
vote
1
reply
2.0k
views
News: Bioinformatics Contest 2017. Results
contest
updated 11 months ago by 43k • written 7.1 years ago by ▴ 70
3
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1
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1.4k
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News: GATK returns to a fully open-source license
gatk
updated 11 months ago by 43k • written 6.9 years ago by 100k
0
votes
1
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1.2k
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News: Registration deadline: Comparative genomics
snp SVs
updated 11 months ago by 43k • written 5.7 years ago by ★ 2.5k
1
vote
1
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210
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News: Integrated Genome Browser (IGB) Office Hours
Integrated-Genome-Browser IGB
updated 8 weeks ago by 43k • written 8 weeks ago by • 0
1
vote
1
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942
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News: Webinar on Extensive Assessment of Gene Fusion Detection, Prioritization, Annotation and Characterization on 11 March 2020
detection webinar RNA-Seq gene-fusion
updated 11 months ago by 43k • written 4.2 years ago by ▴ 40
0
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1
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725
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News: Our New Publication "Machine learning to support social media empowered patients in cancer care and cancer treatment decisions"
Machine-Learning Health-Informatics
updated 11 months ago by 43k • written 5.5 years ago by ▴ 20
906 results • Page 3 of 19
Recent Votes
Answer: Design matrix Differential expression analysis
A: PCA plot from read count matrix from RNA-Seq
A: PCA plot from read count matrix from RNA-Seq
Answer: Design matrix Differential expression analysis
A: extract dendrogram cluster from pheatmap
extract dendrogram cluster from pheatmap
Answer: Searching for gene in multiple genomes
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Commentator to dsull ★ 6.0k
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Recent Replies
Answer: GRCh38.gmap file by Mathew • 0
Hi, I have spent some time searching for a GRCH38 map file for you. I have found a certain publication that uses a hg38 genetic map file…
Answer: Association study using SNP data by Mathew • 0
Hi, You asked three questions so I will attempt to help the best I can **What should be the optimal GC score cutoff** It sounds li…
Comment: Design matrix Differential expression analysis by SHN ▴ 40
Thank you for your explanation. I am working on the cell lines and I am investigating the effect of the treatment on the expression level, …
Answer: Issues with Mixture file when using CIBERSORTx by vjanve • 0
I ran into same issue of "duplicated gene symbol(s)": 1: In CIBERSORTxFractions(sigmatrix = sigmatrix, mixture = mixture, : 22292 dup…
Comment: creating batch colum for batch correction by Expert ▴ 10
Thank you for your response. These samples were collected from the same patient at different time points(day 0, 8 and 18) and these are ind…
Comment: creating batch colum for batch correction by ATpoint 82k
Not sure I follow. Can you first of all describe which comparisons you want to make, pretending there was no batch effect at all. Write dow…
Comment: Pindel Segmentation Fault Error by Ruqaiya • 0
This the tool still problematic?
Comment: Segmentation error while using a tool by Ruqaiya • 0
Thank you for the advice, i'll keep that in mind.
Comment: Segmentation error while using a tool by Ruqaiya • 0
I am trying to reproduce some bioinformatics data from a research paper-[this paper][1] as i was asked to work on an MRSA bioinfo project, …
Answer: Segmentation error while using a tool by Mensur Dlakic ★ 27k
Most likely you didn't do anything wrong. Going by your previous post that you have only 8 GB of RAM, the most likely reason is the lack of…
Comment: Segmentation error while using a tool by Thanujay S • 0
Hey @Ruqaiya! Can you please give more details on why smalt is opted here? According to what I can see, the tool has become obsolete! Why …
Comment: Extracting mutation status from MAF files - TCGA by Thanujay S • 0
Hey! Can you explain the question further? What have you tried?
Comment: Downloading older version of a tool by Ruqaiya • 0
I tried the 2nd option only. I got the files of older version from the author but that version isn't working on my WSL, it's showing Segmen…
Comment: filtering before dada2 by GenoMax 142k
> I encountered a significant decrease in the percentage of merged reads. You can check with `bbmerge.sh` from BBMap suite to see how many…
Comment: HCL database download by GenoMax 142k
Isn't the download link available above the plot: http://bis.zju.edu.cn/HCL/data/DGE/Adult-Transverse-Colon1_dge.txt.gz
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