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News: Google Genomics and Broad Institute Team Up to Tackle Genomic Data
google broad gatk
updated 5 weeks ago by 37k • written 7.6 years ago by ★ 5.1k
0
votes
0
replies
218
views
News: Seascape Genomics in R course
Genomics R Seascape Population
4 months ago by carlopecoraro2 ★ 2.2k
2
votes
0
replies
2.0k
views
News: Learn how to use IGB with Galaxy for RNA-Seq - Nov 12, 2014
igb galaxy RNA-Seq
updated 12 months ago by 37k • written 8.2 years ago by ★ 2.3k
3
votes
0
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1.3k
views
News: Large scale cancer RNA-Seq study (more than 5k samples were analyzed in this study)
RNA-Seq cancer
updated 7 months ago by 37k • written 7.8 years ago by 9.8k
0
votes
0
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190
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News: course: RNA-seq analyses in non-model organisms
differential Bioconductor RNAseq expression non-model organisms analysis R
3 months ago by carlopecoraro2 ★ 2.2k
0
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0
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1.5k
views
News: ecSeq's RNA-Seq Experts - Prof. Dr. Ivo Hofacker
RNA-Seq NGS
updated 5 months ago by 37k • written 7.2 years ago by 9.8k
1
vote
0
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489
views
News: New ebook: From cell line to Command line to learn computational biology
snakemake biology unix RNAseq computational
4 weeks ago by Ming Tang ★ 2.9k
0
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0
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168
views
News: Getting the most out of R course - last call
ggplot2 R tidyverse
4 months ago by carlopecoraro2 ★ 2.2k
3
votes
0
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1.5k
views
News: Human Genome Project: Twenty-five years of big biology
Human-Genome-Project
updated 4 months ago by 37k • written 7.3 years ago by 7.0k
0
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0
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295
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News: online training - Data Visualization with Python
Python Data-Visualization
updated 6 months ago by 37k • written 7 months ago by ★ 2.2k
0
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0
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1.2k
views
News: EMBO Practical Course: Microbial Metagenomics
Genomic-technologies
updated 7 weeks ago by 37k • written 3.3 years ago by • 0
2
votes
0
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2.7k
views
News: New article on TCGA data & useful resource: Comprehensive Genomic Characterization of Long Non-coding RNAs across Human Cancers
RNA-Seq long-noncoding-RNAs
updated 5 months ago by 37k • written 7.3 years ago by 7.4k
0
votes
0
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624
views
News: Illumina Webinar Germany
ngs sequencing
updated 5 months ago by 37k • written 3.2 years ago by • 0
0
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0
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2.0k
views
News: Predict Protein Expression in Bacteria
sequence Assembly genome
updated 5 months ago by 37k • written 7.2 years ago by ▴ 40
0
votes
0
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274
views
News: Online course - Metabarcoding in microbial Ecology
Qiime2 Metabarcoding Microbial-Ecology
updated 6 weeks ago by 37k • written 8 months ago by ★ 2.2k
0
votes
0
replies
1.5k
views
News: Festival of Genomics, San Mateo 2015
dna genome event next-gen-sequencing
updated 3 months ago by 37k • written 7.5 years ago by • 0
0
votes
0
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198
views
News: Genomics Webinar: Using Mastermind’s New ClinVar Integration to Accelerate Clinical Diagnoses
variant-interpretation genomics database webinar
updated 7 weeks ago by 37k • written 4 months ago by • 0
2
votes
0
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130
views
News: Course - Reproducibility in Bioinformatics
Bioinformatics Reproducibility
3 days ago by carlopecoraro2 ★ 2.2k
0
votes
0
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225
views
News: Online training - DNA methylation in plants and animals
OxfordNanopore DNAMethylation BSseq longreads PacBio
5 months ago by carlopecoraro2 ★ 2.2k
2
votes
0
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1.4k
views
News: The Mozilla Fellowship for Science - Deadline Aug 14, 2015
open-science open-data
updated 3 months ago by 37k • written 7.5 years ago by 4.9k
0
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0
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791
views
News: Training in Metagenomics Data Analysis @ NIH
next-gen Metagenomics training
updated 7 weeks ago by 37k • written 3.5 years ago by ▴ 130
0
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0
replies
231
views
News: Cellosaurus release 41 is available
biocuration knowledgebase cell news line databases
10 months ago by Amos Bairoch ▴ 110
0
votes
0
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211
views
News: course - Developing R/Bioconductor packages for genomics
developing package Bioconductor Genomics R
3 months ago by carlopecoraro2 ★ 2.2k
0
votes
0
replies
241
views
News: Landscape Genomics in R course
LandscapeGenomics
9 months ago by carlopecoraro2 ★ 2.2k
0
votes
0
replies
211
views
News: Flow cytometry analysis with R/Bioconductor course
Bioconductor R Cytometry Flow
3 months ago by carlopecoraro2 ★ 2.2k
0
votes
0
replies
251
views
News: Online course - Developing R/Bioconductor packages for genomics
Bioconductor R
updated 6 weeks ago by 37k • written 9 months ago by ★ 2.2k
0
votes
0
replies
299
views
News: Winter School in Bioinformatics - last seats available
docker Bioinformatics RNAseq Unix Genomics
4 weeks ago by carlopecoraro2 ★ 2.2k
0
votes
0
replies
225
views
News: Introduction to R Shiny course
WebApplications R RShiny
5 weeks ago by carlopecoraro2 ★ 2.2k
0
votes
0
replies
167
views
News: Introductory video to the Cellosaurus
cellosaurus cell-line
updated 6 weeks ago by 37k • written 6 weeks ago by ▴ 110
0
votes
0
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127
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News: INTRODUCTION TO ANALYTICAL PALEOBIOLOGY: FOSSIL RECORD BIASES, DIVERSITY, & BIOGEOGRAPHY
Biogeography Paleobiology R
6 weeks ago by carlopecoraro2 ★ 2.2k
0
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0
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285
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News: Winter School in Bioinformatics
course workshop
updated 7 weeks ago by 37k • written 3 months ago by ★ 2.2k
0
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0
replies
273
views
News: Machine Learning in R - course
MachineLearning
11 months ago by carlopecoraro2 ★ 2.2k
8
votes
0
replies
2.3k
views
News: De Novo Genome Assembly Using Next-Generation Sequence Data (8 - 10 February 2016)
Assembly Workshop DNA-Seq
updated 4 months ago by 37k • written 7.3 years ago by 9.8k
0
votes
0
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256
views
News: Gene Set Enrichment Analysis in R workshop
GSE
9 months ago by carlopecoraro2 ★ 2.2k
0
votes
0
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1.6k
views
News: 8th National Symposium cum Workshop on Recent Trends in Structural Bioinformatics and Computer Aided Drug Design [SBCADD 2016]
SNP alignment sequence genome
updated 5 months ago by 37k • written 7.2 years ago by • 0
1
vote
0
replies
1.8k
views
News: Computational Biology student/post doc In the UK or EU? Come to our Bioinformatics Student Symposium!
student sequencing genome symposium
updated 4 months ago by 37k • written 7.4 years ago by ▴ 10
10
votes
0
replies
3.1k
views
News: 1000 Genomes data on GRCh38
1000Genomes GRCh38 alts alignment
updated 5 months ago by 37k • written 7.3 years ago by ▴ 100
0
votes
0
replies
101
views
News: Reminder: NCBI Aspera access, update Aspera Connect by Feb 1, 2023
Aspera NCBI SRA GenBank
7 days ago by PeterC_NCBI ▴ 180
8
votes
0
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1.7k
views
News: Please help! IGB grant and survey
igb ChIP-Seq RNA-Seq genome
updated 9 months ago by 37k • written 7.9 years ago by ★ 2.3k
5
votes
0
replies
1.7k
views
News: The future of the postdoc
sequencing Postdoc
updated 7 months ago by 37k • written 7.8 years ago by ★ 1.2k
0
votes
0
replies
2.1k
views
News: Coursera Bioinformatics Specialization will start in August 31 2015
Coursera
updated 3 months ago by 37k • written 7.5 years ago by ★ 2.2k
0
votes
0
replies
229
views
News: RNAseq workshop (Model Species) : April4-7, 2022
RNAseq Model species Workshop
10 months ago by singh.vijender ▴ 50
0
votes
0
replies
227
views
News: Paleobiology in R: FOSSIL RECORD BIASES, DIVERSITY, & BIOGEOGRAPHY - course
Paleobiology
11 months ago by carlopecoraro2 ★ 2.2k
0
votes
0
replies
267
views
News: 4th edition of the GWAS course
GWAS
11 months ago by carlopecoraro2 ★ 2.2k
1
vote
0
replies
246
views
News: Data analysis with the Tidyverse in July (18th-21st).
Visualization R Tidyverse data-analysis
updated 6 months ago by 37k • written 7 months ago by ★ 2.2k
0
votes
0
replies
230
views
News: Conservation Genomics Workshop
ConservationGenomics
9 months ago by carlopecoraro2 ★ 2.2k
1
vote
0
replies
271
views
News: Data visualization in Python course
Data Visualization Python
9 months ago by carlopecoraro2 ★ 2.2k
0
votes
0
replies
241
views
News: Virtual Genome Assembly Workshop : May 16-19, 2022
assembly Genome Workshop
9 months ago by singh.vijender ▴ 50
0
votes
0
replies
845
views
News: Pre-Register for the NCTR Indel Calling from Oncopanel Sequencing Data Challenge with FDA’s National Center for Toxicological Research (NCTR) and pre…
oncopanel indel-calling
updated 6 weeks ago by 37k • written 9 months ago by ▴ 10
0
votes
0
replies
273
views
News: ONLINE COURSE - RADseq data analysis using Stacks
Phylogenomics Population RADseq Genomics Stacks
8 months ago by carlopecoraro2 ★ 2.2k
235 results • Page 3 of 5
Recent Votes
Answer: Looking for a tool which provides mapping quality score distributions from BAM f
Comment: mirbase does not have miRNA annotation of my species, what are the alternatives?
Answer: mirbase does not have miRNA annotation of my species, what are the alternatives?
Answer: Gviz python alternative
Answer: Gviz python alternative
Answer: Annotating snps with gene information
Comment: Plotting Correlation matrix
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Recent Replies
Answer: Python Dictionary of Primer3-py Primer Designs by barslmn ★ 1.2k
You're so close. You can simply loop over sequence dictionaries like you did with the `design_output` and check if the keys with `startswit…
Comment: Unable to install clusterProfiler on Mac M1 by GenoMax 125k
Have you installed `Xcode` and the command line tools that go with? If not you will need to install those.
Answer: SRA taxonomy analysis by Steve • 0
Thanks @genomax I created an aws glue crawler to pull the data from s3://sra-pub-metadata-us-east-1/sra_tax_analysis_tool/ I wonder if it …
Comment: mirbase does not have miRNA annotation of my species, what are the alternatives? by demoraesdiogo2017 ▴ 80
thanks! however, shouldn't it also have a gtf/gff file with the annotations?
Comment: Getting a VCF file from plink .bed, .fam and .bim files by hi.there • 0
Thanks Ram. Yes. I have read all of this documentation before. --file and --bfile. I have actually tried doing the complete liftover be…
Answer: SRA taxonomy analysis by GenoMax 125k
This data may only be available using `BigQuery` for [**SRA in cloud**][1]. For more information on querying: https://www.ncbi.nlm.nih.g…
Comment: MesKit error message - Join columns must be present in data. by CH1374 • 0
column names for the maf are: [1] "Hugo_Symbol" "Chromosome" "Start_Position" [4] "End_Position" "Variant_Classification" "Variant_Type" [7…
Answer: scaffold assembly inro chromosomal assembly using reference genome by samuel.a.odonnell ▴ 450
Have a look at ragtag and ragout. I use ragout for smaller assemblies (~20 Mb and less) and ragtag for larger genomes.
Comment: CompressedGRangesList don't have seqLengths: BiocParallel errors: Error in covRl by Ram 37k
I've been meaning to work on a Biostars-specific code formatting manual for a while now but the basic is pretty simple: You can use backtic…
Comment: Multiline Fasta To Single Line Fasta by Onur • 0
Thank you it's also worked for me too. Best,
Comment: CompressedGRangesList don't have seqLengths: BiocParallel errors: Error in covRl by Estefania ▴ 10
Thanks Ram. Could you point to a manual on how to make the post look like yours? I just copy-pasted my R script and this is how it shows in…
Comment: extracting input files form Seurat by rasing02 • 0
Thank you jared.andrews07
Comment: extracting input files form Seurat by rasing02 • 0
Yes, I just need the input data so that investigators can use tools other than R to visualize the data in form of viloin plots or feature p…
Comment: Downloading 450k methylation data from GEO by GenoMax 125k
I don't think they have provided processed data as a single upload.
Answer: extracting input files form Seurat by jared.andrews07 ★ 14k
You can get the data behind any of the plots easily enough: ``` p <- VlnPlot(Seurat_object, features = "X", group.by = "Names",split.by…
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