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235 results • Page
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4
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0
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2.1k
views
News:
Google Genomics and Broad Institute Team Up to Tackle Genomic Data
google
broad
gatk
updated 5 weeks ago by
Ram
37k • written 7.6 years ago by
William
★ 5.1k
0
votes
0
replies
218
views
News:
Seascape Genomics in R course
Genomics
R
Seascape
Population
4 months ago by
carlopecoraro2
★ 2.2k
2
votes
0
replies
2.0k
views
News:
Learn how to use IGB with Galaxy for RNA-Seq - Nov 12, 2014
igb
galaxy
RNA-Seq
updated 12 months ago by
Ram
37k • written 8.2 years ago by
Ann
★ 2.3k
3
votes
0
replies
1.3k
views
News:
Large scale cancer RNA-Seq study (more than 5k samples were analyzed in this study)
RNA-Seq
cancer
updated 7 months ago by
Ram
37k • written 7.8 years ago by
David Langenberger
9.8k
0
votes
0
replies
190
views
News:
course: RNA-seq analyses in non-model organisms
differential
Bioconductor
RNAseq
expression
non-model
organisms
analysis
R
3 months ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
1.5k
views
News:
ecSeq's RNA-Seq Experts - Prof. Dr. Ivo Hofacker
RNA-Seq
NGS
updated 5 months ago by
Ram
37k • written 7.2 years ago by
David Langenberger
9.8k
1
vote
0
replies
489
views
News:
New ebook: From cell line to Command line to learn computational biology
snakemake
biology
unix
RNAseq
computational
4 weeks ago by
Ming Tang
★ 2.9k
0
votes
0
replies
168
views
News:
Getting the most out of R course - last call
ggplot2
R
tidyverse
4 months ago by
carlopecoraro2
★ 2.2k
3
votes
0
replies
1.5k
views
News:
Human Genome Project: Twenty-five years of big biology
Human-Genome-Project
updated 4 months ago by
Ram
37k • written 7.3 years ago by
venu
7.0k
0
votes
0
replies
295
views
News:
online training - Data Visualization with Python
Python
Data-Visualization
updated 6 months ago by
Ram
37k • written 7 months ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
1.2k
views
News:
EMBO Practical Course: Microbial Metagenomics
Genomic-technologies
updated 7 weeks ago by
Ram
37k • written 3.3 years ago by
EMBL Events
• 0
2
votes
0
replies
2.7k
views
News:
New article on TCGA data & useful resource: Comprehensive Genomic Characterization of Long Non-coding RNAs across Human Cancers
RNA-Seq
long-noncoding-RNAs
updated 5 months ago by
Ram
37k • written 7.3 years ago by
EagleEye
7.4k
0
votes
0
replies
624
views
News:
Illumina Webinar Germany
ngs
sequencing
updated 5 months ago by
Ram
37k • written 3.2 years ago by
srossnagl
• 0
0
votes
0
replies
2.0k
views
News:
Predict Protein Expression in Bacteria
sequence
Assembly
genome
updated 5 months ago by
Ram
37k • written 7.2 years ago by
rutial
▴ 40
0
votes
0
replies
274
views
News:
Online course - Metabarcoding in microbial Ecology
Qiime2
Metabarcoding
Microbial-Ecology
updated 6 weeks ago by
Ram
37k • written 8 months ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
1.5k
views
News:
Festival of Genomics, San Mateo 2015
dna
genome
event
next-gen-sequencing
updated 3 months ago by
Ram
37k • written 7.5 years ago by
eleanor.rogers
• 0
0
votes
0
replies
198
views
News:
Genomics Webinar: Using Mastermind’s New ClinVar Integration to Accelerate Clinical Diagnoses
variant-interpretation
genomics
database
webinar
updated 7 weeks ago by
Ram
37k • written 4 months ago by
Kate
• 0
2
votes
0
replies
130
views
News:
Course - Reproducibility in Bioinformatics
Bioinformatics
Reproducibility
3 days ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
225
views
News:
Online training - DNA methylation in plants and animals
OxfordNanopore
DNAMethylation
BSseq
longreads
PacBio
5 months ago by
carlopecoraro2
★ 2.2k
2
votes
0
replies
1.4k
views
News:
The Mozilla Fellowship for Science - Deadline Aug 14, 2015
open-science
open-data
updated 3 months ago by
Ram
37k • written 7.5 years ago by
Andrew Su
4.9k
0
votes
0
replies
791
views
News:
Training in Metagenomics Data Analysis @ NIH
next-gen
Metagenomics
training
updated 7 weeks ago by
Ram
37k • written 3.5 years ago by
AABI
▴ 130
0
votes
0
replies
231
views
News:
Cellosaurus release 41 is available
biocuration
knowledgebase
cell
news
line
databases
10 months ago by
Amos Bairoch
▴ 110
0
votes
0
replies
211
views
News:
course - Developing R/Bioconductor packages for genomics
developing
package
Bioconductor
Genomics
R
3 months ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
241
views
News:
Landscape Genomics in R course
LandscapeGenomics
9 months ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
211
views
News:
Flow cytometry analysis with R/Bioconductor course
Bioconductor
R
Cytometry
Flow
3 months ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
251
views
News:
Online course - Developing R/Bioconductor packages for genomics
Bioconductor
R
updated 6 weeks ago by
Ram
37k • written 9 months ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
299
views
News:
Winter School in Bioinformatics - last seats available
docker
Bioinformatics
RNAseq
Unix
Genomics
4 weeks ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
225
views
News:
Introduction to R Shiny course
WebApplications
R
RShiny
5 weeks ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
167
views
News:
Introductory video to the Cellosaurus
cellosaurus
cell-line
updated 6 weeks ago by
Ram
37k • written 6 weeks ago by
Amos Bairoch
▴ 110
0
votes
0
replies
127
views
News:
INTRODUCTION TO ANALYTICAL PALEOBIOLOGY: FOSSIL RECORD BIASES, DIVERSITY, & BIOGEOGRAPHY
Biogeography
Paleobiology
R
6 weeks ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
285
views
News:
Winter School in Bioinformatics
course
workshop
updated 7 weeks ago by
Ram
37k • written 3 months ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
273
views
News:
Machine Learning in R - course
MachineLearning
11 months ago by
carlopecoraro2
★ 2.2k
8
votes
0
replies
2.3k
views
News:
De Novo Genome Assembly Using Next-Generation Sequence Data (8 - 10 February 2016)
Assembly
Workshop
DNA-Seq
updated 4 months ago by
Ram
37k • written 7.3 years ago by
David Langenberger
9.8k
0
votes
0
replies
256
views
News:
Gene Set Enrichment Analysis in R workshop
GSE
9 months ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
1.6k
views
News:
8th National Symposium cum Workshop on Recent Trends in Structural Bioinformatics and Computer Aided Drug Design [SBCADD 2016]
SNP
alignment
sequence
genome
updated 5 months ago by
Ram
37k • written 7.2 years ago by
perlgopi
• 0
1
vote
0
replies
1.8k
views
News:
Computational Biology student/post doc In the UK or EU? Come to our Bioinformatics Student Symposium!
student
sequencing
genome
symposium
updated 4 months ago by
Ram
37k • written 7.4 years ago by
ben.white
▴ 10
10
votes
0
replies
3.1k
views
News:
1000 Genomes data on GRCh38
1000Genomes
GRCh38
alts
alignment
updated 5 months ago by
Ram
37k • written 7.3 years ago by
fairley
▴ 100
0
votes
0
replies
101
views
News:
Reminder: NCBI Aspera access, update Aspera Connect by Feb 1, 2023
Aspera
NCBI
SRA
GenBank
7 days ago by
PeterC_NCBI
▴ 180
8
votes
0
replies
1.7k
views
News:
Please help! IGB grant and survey
igb
ChIP-Seq
RNA-Seq
genome
updated 9 months ago by
Ram
37k • written 7.9 years ago by
Ann
★ 2.3k
5
votes
0
replies
1.7k
views
News:
The future of the postdoc
sequencing
Postdoc
updated 7 months ago by
Ram
37k • written 7.8 years ago by
HG
★ 1.2k
0
votes
0
replies
2.1k
views
News:
Coursera Bioinformatics Specialization will start in August 31 2015
Coursera
updated 3 months ago by
Ram
37k • written 7.5 years ago by
rtliu
★ 2.2k
0
votes
0
replies
229
views
News:
RNAseq workshop (Model Species) : April4-7, 2022
RNAseq
Model
species
Workshop
10 months ago by
singh.vijender
▴ 50
0
votes
0
replies
227
views
News:
Paleobiology in R: FOSSIL RECORD BIASES, DIVERSITY, & BIOGEOGRAPHY - course
Paleobiology
11 months ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
267
views
News:
4th edition of the GWAS course
GWAS
11 months ago by
carlopecoraro2
★ 2.2k
1
vote
0
replies
246
views
News:
Data analysis with the Tidyverse in July (18th-21st).
Visualization
R
Tidyverse
data-analysis
updated 6 months ago by
Ram
37k • written 7 months ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
230
views
News:
Conservation Genomics Workshop
ConservationGenomics
9 months ago by
carlopecoraro2
★ 2.2k
1
vote
0
replies
271
views
News:
Data visualization in Python course
Data
Visualization
Python
9 months ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
241
views
News:
Virtual Genome Assembly Workshop : May 16-19, 2022
assembly
Genome
Workshop
9 months ago by
singh.vijender
▴ 50
0
votes
0
replies
845
views
News:
Pre-Register for the NCTR Indel Calling from Oncopanel Sequencing Data Challenge with FDA’s National Center for Toxicological Research (NCTR) and pre…
oncopanel
indel-calling
updated 6 weeks ago by
Ram
37k • written 9 months ago by
sarah_p
▴ 10
0
votes
0
replies
273
views
News:
ONLINE COURSE - RADseq data analysis using Stacks
Phylogenomics
Population
RADseq
Genomics
Stacks
8 months ago by
carlopecoraro2
★ 2.2k
235 results • Page
3 of 5
Recent Votes
Answer: Looking for a tool which provides mapping quality score distributions from BAM f
Comment: mirbase does not have miRNA annotation of my species, what are the alternatives?
Answer: mirbase does not have miRNA annotation of my species, what are the alternatives?
Answer: Gviz python alternative
Answer: Gviz python alternative
Answer: Annotating snps with gene information
Comment: Plotting Correlation matrix
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★ 2.8k
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Answer: Python Dictionary of Primer3-py Primer Designs
by
barslmn
★ 1.2k
You're so close. You can simply loop over sequence dictionaries like you did with the `design_output` and check if the keys with `startswit…
Comment: Unable to install clusterProfiler on Mac M1
by
GenoMax
125k
Have you installed `Xcode` and the command line tools that go with? If not you will need to install those.
Answer: SRA taxonomy analysis
by
Steve
• 0
Thanks @genomax I created an aws glue crawler to pull the data from s3://sra-pub-metadata-us-east-1/sra_tax_analysis_tool/ I wonder if it …
Comment: mirbase does not have miRNA annotation of my species, what are the alternatives?
by
demoraesdiogo2017
▴ 80
thanks! however, shouldn't it also have a gtf/gff file with the annotations?
Comment: Getting a VCF file from plink .bed, .fam and .bim files
by
hi.there
• 0
Thanks Ram. Yes. I have read all of this documentation before. --file and --bfile. I have actually tried doing the complete liftover be…
Answer: SRA taxonomy analysis
by
GenoMax
125k
This data may only be available using `BigQuery` for [**SRA in cloud**][1]. For more information on querying: https://www.ncbi.nlm.nih.g…
Comment: MesKit error message - Join columns must be present in data.
by
CH1374
• 0
column names for the maf are: [1] "Hugo_Symbol" "Chromosome" "Start_Position" [4] "End_Position" "Variant_Classification" "Variant_Type" [7…
Answer: scaffold assembly inro chromosomal assembly using reference genome
by
samuel.a.odonnell
▴ 450
Have a look at ragtag and ragout. I use ragout for smaller assemblies (~20 Mb and less) and ragtag for larger genomes.
Comment: CompressedGRangesList don't have seqLengths: BiocParallel errors: Error in covRl
by
Ram
37k
I've been meaning to work on a Biostars-specific code formatting manual for a while now but the basic is pretty simple: You can use backtic…
Comment: Multiline Fasta To Single Line Fasta
by
Onur
• 0
Thank you it's also worked for me too. Best,
Comment: CompressedGRangesList don't have seqLengths: BiocParallel errors: Error in covRl
by
Estefania
▴ 10
Thanks Ram. Could you point to a manual on how to make the post look like yours? I just copy-pasted my R script and this is how it shows in…
Comment: extracting input files form Seurat
by
rasing02
• 0
Thank you jared.andrews07
Comment: extracting input files form Seurat
by
rasing02
• 0
Yes, I just need the input data so that investigators can use tools other than R to visualize the data in form of viloin plots or feature p…
Comment: Downloading 450k methylation data from GEO
by
GenoMax
125k
I don't think they have provided processed data as a single upload.
Answer: extracting input files form Seurat
by
jared.andrews07
★ 14k
You can get the data behind any of the plots easily enough: ``` p <- VlnPlot(Seurat_object, features = "X", group.by = "Names",split.by…
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