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1,000 results • Page
5 of 20
Sort: Votes
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5
votes
1
reply
1.1k
views
News:
New biostar-tools metaport for FreeBSD
freebsd
software
2.6 years ago by
bacon4000
▴ 80
5
votes
3
replies
1.6k
views
News:
Bioinfo-Core Conference Call, October 17, 2017 (11 am EDT USA, local times around world)
bioinfo-core
updated 13 months ago by
Ram
43k • written 6.7 years ago by
GenoMax
142k
5
votes
1
reply
3.5k
views
News:
Broad Gatk Haplotypecaller Speed Improved 2-4 X By Cooperation With Intel, And Incremental Multi-Sample Calling Made Possible!
gatk
variant-calling
updated 14 months ago by
Ram
43k • written 10.1 years ago by
William
★ 5.3k
5
votes
0
replies
2.0k
views
News:
Ebi Rdf Platform Launched Today
EBI
updated 14 months ago by
Ram
43k • written 10.6 years ago by
Pierre Lindenbaum
161k
5
votes
0
replies
3.1k
views
News:
Penn State now offers an Online Graduate Certificate: Applied Bioinformatics
bioinformatics-education
updated 14 months ago by
Ram
43k • written 9.7 years ago by
Istvan Albert
100k
5
votes
0
replies
1.6k
views
News:
New Bioconductor F1000Research Channel for publishing Bioconductor workflows
bioconductor
reproducible-research
updated 13 months ago by
Ram
43k • written 8.8 years ago by
Sean Davis
26k
5
votes
1
reply
1.6k
views
News:
2-day WORKSHOP on SNAKEMAKE
next-gen
updated 11 months ago by
Ram
43k • written 5.9 years ago by
carlopecoraro2
★ 2.5k
5
votes
0
replies
1.8k
views
News:
Bioinformatics Contest 2019
bioinforussia
bioinfcontest
bioinfcontest2019
updated 11 months ago by
Ram
43k • written 5.4 years ago by
dashabalashova
▴ 50
5
votes
0
replies
2.3k
views
News:
[UPDATED] Hands-On NGS Data Analysis Workshops 2019
NGS
Bisulfite-Seq
RNA-Seq
DNA-Seq
updated 11 months ago by
Ram
43k • written 5.4 years ago by
David Langenberger
11k
4
votes
1
reply
657
views
News:
Online Course - A Practical Introduction to NGS Data Analysis (September 26-28, 2022)
workshop
ngs
data-analysis
updated 22 months ago by
Ram
43k • written 22 months ago by
David Langenberger
11k
4
votes
3
replies
3.3k
views
News:
CAFE v4.0 available
phylogenetics
CAFE
updated 11 months ago by
Ram
43k • written 7.1 years ago by
Ben Fulton
▴ 150
4
votes
0
replies
6.4k
views
News:
The genome Aggregation Database (gnomAD)
gnomAD
updated 12 months ago by
Ram
43k • written 7.2 years ago by
Pierre Lindenbaum
161k
4
votes
0
replies
209
views
News:
Transform Your Research with Our NGS Data Analysis Online Course!
DNAseq
NGS
Biologists
OnlineCourse
RNAseq
3 months ago by
David Langenberger
11k
4
votes
1
reply
1.9k
views
News:
scRNA-seq data analysis Workshop in Berlin
RNA-Seq
next-gen
updated 11 months ago by
Ram
43k • written 5.5 years ago by
carlopecoraro2
★ 2.5k
4
votes
1
reply
1.8k
views
News:
NCBI BLAST URL domain changes to take effect December 1, 2014
blast
ncbi
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
rtliu
★ 2.2k
4
votes
1
reply
1.2k
views
News:
Bioinformatics Workflows with Nextflow
Netflow
reproducibility
Workflows
updated 11 months ago by
Ram
43k • written 4.4 years ago by
carlopecoraro2
★ 2.5k
4
votes
3
replies
1.9k
views
News:
Boston Genomics Hackathon (facilitated by NCBI)
NCBI
RNA-Seq
DNA-seq
hackathon
updated 13 months ago by
Ram
43k • written 8.1 years ago by
DCGenomics
▴ 330
4
votes
0
replies
1.2k
views
News:
Workshop for genomic data visualization and interpretation
R
RNA-Seq
ggplot2
genomics
updated 11 months ago by
Ram
43k • written 5.4 years ago by
Malachi Griffith
19k
4
votes
3
replies
1.1k
views
News:
You may need to cleanup duplicate NCBI BLAST nt database volumes on your system
databases
NCBI
BLAST
8 months ago by
PeterC_NCBI
▴ 410
4
votes
2
replies
605
views
News:
Standalone NCBI ClusteredNR database now available for download
ClusteredNR
NCBI
standalone
BLAST
8 months ago by
PeterC_NCBI
▴ 410
4
votes
0
replies
2.9k
views
News:
Python for Scientists - FREE Ebook from O'Reilly
python
Data-Analysis
updated 13 months ago by
Ram
43k • written 8.6 years ago by
rtliu
★ 2.2k
4
votes
0
replies
1.9k
views
News:
Bioinformatics education: biology-inspired bioinformatics with project-based learning
education
RNA-seq
updated 11 months ago by
Ram
43k • written 6.1 years ago by
elia.brodsky
▴ 340
4
votes
0
replies
653
views
News:
A Practical Introduction to Single-Cell RNA-Seq Data Analysis (November 8-10, 2023 in Berlin, Germany)
NGS
RNA-Seq
single-cell
workshop
10 months ago by
David Langenberger
11k
4
votes
0
replies
912
views
News:
The BioCompute Object App-a-thon starts on May 14!
standards
computation
pipeline
updated 13 months ago by
Ram
43k • written 5.0 years ago by
stephens_sarah
▴ 150
4
votes
3
replies
1.9k
views
News:
How the strengths of Lisp-family languages facilitate building complex and flexible bioinformatics applications
ChIP-Seq
RNA-Seq
updated 12 months ago by
Ram
43k • written 7.3 years ago by
Bohdan Khomtchouk
▴ 350
4
votes
0
replies
2.4k
views
News:
2nd UK Bioinformatics Student Symposium on 7 Oct '15 at TGAC, Norwich
symposium
updated 19 months ago by
Ram
43k • written 8.7 years ago by
sayonidas03
▴ 100
4
votes
4
replies
1.7k
views
News:
VCFclin working group
vcfclin
updated 14 months ago by
Ram
43k • written 10.0 years ago by
keilbeck
▴ 30
4
votes
0
replies
1.5k
views
News:
Helen Berman Wins The 2013 Delano Award For Computational Biosciences
delano-award
updated 14 months ago by
Ram
43k • written 11.1 years ago by
Casey Bergman
18k
4
votes
0
replies
1.0k
views
News:
SIG Workshop to discuss developments in computational pathology and its interfacing opportunities with bioinformatics during ECCB 2018
microscopy
wsi
digital-pathology
updated 11 months ago by
Ram
43k • written 5.8 years ago by
yves.sucaet
▴ 40
4
votes
3
replies
2.3k
views
News:
India Recently Started Personal Genome Profiling, Commercially.
genome-profiling
updated 14 months ago by
Ram
43k • written 11.0 years ago by
Naren
▴ 1000
4
votes
3
replies
1.9k
views
News:
Proteomics and Genomics Submit your Research Journals
Research
Genomics
Journals
Proteomics
updated 17 months ago by
Ram
43k • written 8.8 years ago by
saichandh.perkannex
• 0
4
votes
0
replies
1.5k
views
News:
All of Us (NIH) precision medicine research program is now open for enrollment
precision-medicine
updated 11 months ago by
Ram
43k • written 6.0 years ago by
GenoMax
142k
4
votes
5
replies
2.8k
views
News:
Kover will provide support via Biostars
kmer
kover
machine-learning
updated 13 months ago by
Ram
43k • written 7.9 years ago by
Alexandre Drouin
▴ 90
4
votes
2
replies
3.1k
views
News:
NCBI NOW (Next generation sequencing Online Workshop) October 13 - 23 , 2015
NCBI
DNA-Seq
NGS
RNA-Seq
updated 13 months ago by
Ram
43k • written 8.6 years ago by
rtliu
★ 2.2k
4
votes
1
reply
2.3k
views
News:
ENCODE Users' Meeting
encode
ucsc
conference
functional-genomics
ensembl
updated 21 months ago by
Ram
43k • written 8.9 years ago by
Emily
23k
4
votes
0
replies
1.9k
views
News:
Viral Bioinformatics and Genomics course August 2017, Glasgow
next-gen
updated 12 months ago by
Ram
43k • written 7.2 years ago by
richard.orton
▴ 40
4
votes
2
replies
1.3k
views
News:
Hands-On Workshop: How to use bisulfite-treated sequencing to study DNA methylation (BS-Seq, Bisulfite-Seq, WGBS)
Workshop
methylation
bisulfite
updated 11 months ago by
Ram
43k • written 4.6 years ago by
Lars
★ 1.0k
4
votes
4
replies
2.9k
views
News:
Join The Dnanexus Developer Program
api
cloud
updated 14 months ago by
Ram
43k • written 10.9 years ago by
akislyuk
▴ 30
4
votes
1
reply
2.1k
views
News:
Mark2Cure launches tool to help crowd-source curation of the biomedical literature
crowd-sourcing
updated 16 months ago by
Ram
43k • written 9.3 years ago by
Obi Griffith
20k
4
votes
0
replies
2.2k
views
News:
Rna-Seq Workshop In Oslo - Seats Available
RNA-seq
updated 14 months ago by
Ram
43k • written 10.2 years ago by
jan.christian
▴ 60
4
votes
0
replies
724
views
News:
Call for Bioinformatics Papers - Genes Special Issue
gene
updated 11 months ago by
Ram
43k • written 4.3 years ago by
Federico Giorgi
▴ 730
4
votes
1
reply
1.4k
views
News:
The 1000 Genomes Project Data Portal Beta Release
1000genomes
next-gen
SNP
updated 13 months ago by
Ram
43k • written 8.0 years ago by
Laura
★ 1.8k
4
votes
2
replies
3.0k
views
News:
New ebook: From cell line to Command line to learn computational biology
unix
snakemake
computational-biology
RNA-seq
5 months ago by
Ming Tommy Tang
★ 3.9k
4
votes
0
replies
1.6k
views
News:
$650M gift to Broad seeks to propel (Genomics based ) psychiatric research
sequencing
updated 14 months ago by
Ram
43k • written 9.8 years ago by
William
★ 5.3k
4
votes
3
replies
3.2k
views
News:
-max_target_seqs 1 in NCBI standalone BLAST does not do what you think it does
blast
updated 11 months ago by
Ram
43k • written 5.6 years ago by
5heikki
11k
4
votes
0
replies
2.4k
views
News:
Google Genomics and Broad Institute Team Up to Tackle Genomic Data
google
broad
gatk
updated 16 months ago by
Ram
43k • written 8.9 years ago by
William
★ 5.3k
4
votes
0
replies
3.0k
views
News:
New simulation dataset for 'A benchmark for RNA-seq quantification pipelines'
RNA-Seq
updated 13 months ago by
Ram
43k • written 7.9 years ago by
Michael Love
★ 2.6k
4
votes
1
reply
2.2k
views
News:
2014 ISCB Wikipedia Article Competition announcement
ISCB
competition
Wikipedia
written 9.8 years ago by
Ben
★ 2.0k
4
votes
0
replies
1.8k
views
News:
Call for Abstracts for the 18th Annual Bioinformatics Open Source Conference (BOSC 2017)
BOSC
OBF
updated 12 months ago by
Ram
43k • written 7.2 years ago by
Chris Fields
★ 2.2k
4
votes
0
replies
2.4k
views
News:
Upcoming Workshop: Ensembl Perl APIs
ensembl
APIs
Perl
workshops
updated 14 months ago by
Ram
43k • written 9.5 years ago by
Denise CS
★ 5.2k
1,000 results • Page
5 of 20
Recent Votes
Comment: GRCh38.gmap file
Answer: GRCh38.gmap file
Answer: GRCh38.gmap file
Answer: Design matrix Differential expression analysis
A: PCA plot from read count matrix from RNA-Seq
A: PCA plot from read count matrix from RNA-Seq
Answer: Design matrix Differential expression analysis
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Comment: Design matrix Differential expression analysis
by
Gordon Smyth
★ 7.1k
> When is it recommended to use the design <- cbind(Intercept=1,Group=c(-1,-1,-1,1,1,1)) It is not recommended. No such code appears anywh…
Comment: GRCh38.gmap file
by
lorena9132
▴ 10
Hi Mathew, The .txt files provided in the link differ from the .gmap files, but after several attempts, I succeeded in generating the .gma…
Answer: GRCh38.gmap file
by
Mathew
▴ 20
Hi, I have spent some time searching for a GRCH38 map file for you. I have found a certain publication that uses a hg38 genetic map file…
Answer: Association study using SNP data
by
Mathew
▴ 20
Hi, You asked three questions so I will attempt to help the best I can **What should be the optimal GC score cutoff** It sounds li…
Comment: Design matrix Differential expression analysis
by
SHN
▴ 40
Thank you for your explanation. I am working on the cell lines and I am investigating the effect of the treatment on the expression level, …
Answer: Issues with Mixture file when using CIBERSORTx
by
vjanve
• 0
I ran into same issue of "duplicated gene symbol(s)": 1: In CIBERSORTxFractions(sigmatrix = sigmatrix, mixture = mixture, : 22292 dup…
Comment: creating batch colum for batch correction
by
Expert
▴ 10
Thank you for your response. These samples were collected from the same patient at different time points(day 0, 8 and 18) and these are ind…
Comment: creating batch colum for batch correction
by
ATpoint
82k
Not sure I follow. Can you first of all describe which comparisons you want to make, pretending there was no batch effect at all. Write dow…
Comment: Pindel Segmentation Fault Error
by
Ruqaiya
• 0
This the tool still problematic?
Comment: Segmentation error while using a tool
by
Ruqaiya
• 0
Thank you for the advice, i'll keep that in mind.
Comment: Segmentation error while using a tool
by
Ruqaiya
• 0
I am trying to reproduce some bioinformatics data from a research paper-[this paper][1] as i was asked to work on an MRSA bioinfo project, …
Answer: Segmentation error while using a tool
by
Mensur Dlakic
★ 27k
Most likely you didn't do anything wrong. Going by your previous post that you have only 8 GB of RAM, the most likely reason is the lack of…
Comment: Segmentation error while using a tool
by
Thanujay S
• 0
Hey @Ruqaiya! Can you please give more details on why smalt is opted here? According to what I can see, the tool has become obsolete! Why …
Comment: Extracting mutation status from MAF files - TCGA
by
Thanujay S
• 0
Hey! Can you explain the question further? What have you tried?
Comment: Downloading older version of a tool
by
Ruqaiya
• 0
I tried the 2nd option only. I got the files of older version from the author but that version isn't working on my WSL, it's showing Segmen…
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