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News: Bioinformatics Contest 2018
contest
updated 11 months ago by 43k • written 6.3 years ago by ▴ 40
4
votes
1
reply
1.4k
views
News: The 1000 Genomes Project Data Portal Beta Release
1000genomes next-gen SNP
updated 13 months ago by 43k • written 8.0 years ago by ★ 1.8k
4
votes
2
replies
3.1k
views
News: NCBI NOW (Next generation sequencing Online Workshop) October 13 - 23 , 2015
NCBI DNA-Seq NGS RNA-Seq
updated 13 months ago by 43k • written 8.6 years ago by ★ 2.2k
4
votes
2
replies
601
views
News: Standalone NCBI ClusteredNR database now available for download
ClusteredNR NCBI standalone BLAST
7 months ago by PeterC_NCBI ▴ 410
4
votes
0
replies
2.2k
views
News: Rna-Seq Workshop In Oslo - Seats Available
RNA-seq
updated 14 months ago by 43k • written 10.2 years ago by ▴ 60
4
votes
0
replies
1.0k
views
News: SIG Workshop to discuss developments in computational pathology and its interfacing opportunities with bioinformatics during ECCB 2018
microscopy wsi digital-pathology
updated 11 months ago by 43k • written 5.7 years ago by ▴ 40
4
votes
3
replies
1.9k
views
News: Boston Genomics Hackathon (facilitated by NCBI)
NCBI RNA-Seq DNA-seq hackathon
updated 13 months ago by 43k • written 8.1 years ago by ▴ 330
4
votes
1
reply
1.8k
views
News: NCBI BLAST URL domain changes to take effect December 1, 2014
blast ncbi
updated 2.2 years ago by 43k • written 9.4 years ago by ★ 2.2k
3
votes
1
reply
2.7k
views
News: Ngs Session At Biocomp Bg 2012 Conference!
next-gen-sequencing
updated 14 months ago by 43k • written 12.0 years ago by ▴ 50
3
votes
0
replies
670
views
News: Unix / scripting / research computing resource
scripting parallel hpc unix programming
2.9 years ago by bacon4000 ▴ 80
3
votes
5
replies
2.3k
views
News: (18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge
gene-ontology CAFA protein
8 months ago by Alexander ▴ 220
3
votes
0
replies
1.3k
views
News: Course on Programming for Evolutionary Biology
Evolution R genome Python
updated 11 months ago by 43k • written 5.4 years ago by ★ 2.2k
3
votes
0
replies
1.0k
views
News: Free online Ensembl course
webinar Ensembl mooc training online
updated 11 months ago by 43k • written 5.7 years ago by 23k
3
votes
3
replies
1.2k
views
News: NCBI's IgBLAST version 1.21.0 is now available
IgBLAST BLAST T-Cell NCBI receptors
11 months ago by PeterC_NCBI ▴ 410
3
votes
0
replies
2.5k
views
News: Samtools/htslib/bcftools 1.1 released
htslib samtools
updated 14 months ago by 43k • written 9.6 years ago by 104k
3
votes
3
replies
2.3k
views
News: Innocentive Challenge: Identify Organisms From A Stream Of Dna Sequences And Get $1,000,000
ngs
updated 14 months ago by 43k • written 11.0 years ago by ▴ 830
3
votes
0
replies
788
views
News: ::FINAL CALL:: NGS Data Analysis for Beginners - 11-13 December 2019 in Munich, Germany (2 seats left)
NGS Workshop
updated 11 months ago by 43k • written 4.5 years ago by 11k
3
votes
2
replies
2.6k
views
News: Samtools/htslib v1.2 released
htslib samtools bcftools
updated 13 months ago by 43k • written 9.2 years ago by 104k
3
votes
0
replies
1.6k
views
News: Ensembl in the Google Summer of Code 2016
ensembl GSOC Google
updated 13 months ago by 43k • written 8.2 years ago by 23k
3
votes
0
replies
3.3k
views
News: Tumorportal - A Tool For Exploring A Pan-Cancer Dataset
tcga cancer-genomics
updated 14 months ago by 43k • written 10.2 years ago by 19k
3
votes
0
replies
1.2k
views
News: Changes to the default NCBI BLAST nucleotide database (nt). Learn more and provide feedback!
NCBI Databases BLAST
17 months ago by PeterC_NCBI ▴ 410
3
votes
0
replies
1.9k
views
News: Deep learning in GATK4
GATK4 deep-learning GATK
updated 11 months ago by 43k • written 6.4 years ago by ★ 1.2k
3
votes
0
replies
4.4k
views
News: Free Online Harvardx Course, Data Analysis For Genomics, Starts April 7
methylation bioconductor ChIP-seq RNA-seq R
updated 14 months ago by 43k • written 10.1 years ago by ★ 2.2k
3
votes
0
replies
1.1k
views
News: New command line tool for annotating variants, vai.pl
UCSC SNP VAI
updated 11 months ago by 43k • written 6.9 years ago by ▴ 580
3
votes
1
reply
2.3k
views
News: NCBI : New API Keys for the E-utilities
pubmed eutils ncbi api
updated 11 months ago by 43k • written 6.5 years ago by 161k
3
votes
0
replies
1.7k
views
News: Human Genome Project: Twenty-five years of big biology
Human-Genome-Project
updated 20 months ago by 43k • written 8.6 years ago by 7.1k
3
votes
5
replies
1.3k
views
News: Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl GTF
updated 7 months ago by ▴ 120 • written 17 months ago by ▴ 30
3
votes
2
replies
750
views
News: NCBI BLAST+ 2.14.1 Now Available
NCBI BLAST
8 months ago by PeterC_NCBI ▴ 410
3
votes
0
replies
557
views
News: gnomAD v4 released
gnomad
6 months ago by Pierre Lindenbaum 161k
3
votes
0
replies
811
views
News: Phylogenomics course in Berlin
snp R next-gen
updated 11 months ago by 43k • written 4.4 years ago by ★ 2.5k
3
votes
0
replies
6.8k
views
News: A Bioinformatics Jobs AMA (Ask Me Anything) on Reddit
reddit r market
updated 21 months ago by 43k • written 8.4 years ago by ▴ 970
3
votes
2
replies
693
views
News: Participate in a NCBI/NIAID Virtual Codeathon: VCF Files for Population Genomics, Jul 31 - Aug 4, 2023
VCF SARS-CoV-2 NCBI Codeathon
11 months ago by PeterC_NCBI ▴ 410
3
votes
1
reply
6.8k
views
News: LinkedOmics - a web portal for TCGA/CPTAC data
TCGA cptac cancer
updated 11 months ago by 43k • written 6.4 years ago by 141k
3
votes
0
replies
196
views
News: Webinar “Learning Single-cell Atlases” with Dr. Fabian Theis, author of Scanpy on May 8
Scanpy Generative-AI scRNA Machine-Learning
updated 5 days ago by 43k • written 5 days ago by ▴ 60
3
votes
0
replies
712
views
News: Testing and feedback of upcoming salmon release
salmon RNA-Seq
updated 11 months ago by 43k • written 4.6 years ago by 6.5k
3
votes
0
replies
3.1k
views
News: Statistics and R for the Life Sciences from Harvard University (Start: 19 Jan 2015)
edX statistics
updated 2.1 years ago by 43k • written 9.3 years ago by ★ 2.2k
3
votes
2
replies
1.2k
views
News: Course "Data Crunching: from hell to heaven", Udine, Italy, 25-27 July, 2018
NGS next-generation-sequencing
updated 11 months ago by 43k • written 5.9 years ago by ★ 3.0k
3
votes
0
replies
1.8k
views
News: Dnanexus Is Giving Away 1 Free Agbt 4-Day Badge
next-gen conference
updated 14 months ago by 43k • written 11.3 years ago by ▴ 30
3
votes
0
replies
2.1k
views
News: Big Data in Healthcare Symposium, Luxembourg, 28/29 October 2015
big-data conference medicine health
updated 19 months ago by 43k • written 8.7 years ago by ▴ 130
3
votes
1
reply
1.2k
views
News: UniProt: Change of FT and CC section in UniProtKB text format
uniprot protein
updated 11 months ago by 43k • written 4.6 years ago by ★ 2.4k
3
votes
2
replies
603
views
News: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling endocrinology ML systems-biology machine-learning
4 weeks ago by Johannes W. Dietrich • 0
3
votes
0
replies
1.9k
views
News: Free Training in Bioinformatic analysis available with Pine Biotech T-BioInfo
RNA-Seq biotech next-gen-sequencing
updated 11 months ago by 43k • written 6.9 years ago by ▴ 70
3
votes
0
replies
1.5k
views
News: Restructuring the 1000 Genomes FTP site
sequencing SNP alignment
updated 19 months ago by 43k • written 8.7 years ago by ★ 1.8k
3
votes
0
replies
1.0k
views
News: Nextflow Slack Channel
nextflow slack
2.2 years ago by ATpoint 82k
3
votes
4
replies
2.4k
views
News: Training in Metagenomics Data Analysis @NIH, USA, Nov 14 - 17, 2017
metagenomics microbiome training
updated 12 months ago by 43k • written 7.6 years ago by ▴ 140
3
votes
0
replies
2.3k
views
News: 2013 Gmod Community Survey
gff3 galaxy biomart
updated 14 months ago by 43k • written 11.2 years ago by ▴ 280
3
votes
0
replies
1.0k
views
News: Invitation to submit articles to the Bioconductor Gateway on F1000Research
bioconductor
updated 11 months ago by 43k • written 6.1 years ago by 26k
3
votes
4
replies
2.0k
views
News: OmicCircos was updated
R OmicCircos
updated 23 months ago by 43k • written 9.1 years ago by ▴ 50
3
votes
2
replies
1.3k
views
News: Genome Informatics meeting software list
meetings genomics informatics software
updated 11 months ago by 43k • written 6.5 years ago by 26k
3
votes
0
replies
1.8k
views
News: New web BLAST default parameters and search limits are now in place at NCBI
www-blast blast ncbi
updated 10 months ago by 43k • written 3.9 years ago by 141k
1,000 results • Page 6 of 20
Recent Votes
Comment: Can't install AnnotationHub
C: TOPGO- how to do GO enrichment using a custom go database?
Answer: NGS forensics: how to know if data is fabricated
Comment: Adjust pvalue in R with different approach give me all different outcome
Comment: Bacterial plasmid analysis
Comment: DESeq2 processing problems
Comment: What does 'bundle_uuid' refer to in this metadata sheet?
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Recent Replies
Answer: Basic stats in hierfstat by mdav • 0
Hi Zoe, did you find an answer for this? I am also getting the same error.
Comment: GATK won't produce figures while analyzing covariates to generate 'recal_plots.p by GenoMax 141k
Your cluster may be missing libraries etc to create the PDF plots (this looks like a cluster job submission) on your cluster. Did you check…
Comment: Post-imputation plot by kl ▴ 10
Ok yes I think my thought was that given these errors, I could remove the mismatches and flip the alleles which seem to need flipping based…
Comment: Bacterial plasmid analysis by nicole.kavanagh • 0
I think I will perhaps use their predominant PlasmidFinder type to group plasmids together and create separate core phylogenies for each as…
Comment: Bacterial plasmid analysis by GenoMax 141k
Can you classify the plasmids based on function (resistance genes they are carrying or some other criteria). Sizes above are indicating a w…
Comment: DESeq2 processing problems by ATpoint 82k
Initially posted here https://support.bioconductor.org/p/9158036/ where I suggested to put code and data and noted that GEOquery returns ar…
Answer: Post-imputation plot by LChart 3.9k
I agree that some need to be flipped (A/T and C/G where your panel frequency is 1 - ref panel frequency). There are other variants which yo…
Comment: RNA editing sites based on DNA seq and RNA seq by Adam ▴ 30
Are those 20% unaligned reads coming after hyper-editing detection?
Answer: How to find overlap of clusters in two seurat porject by Adam ▴ 30
I think your best bet would be to use annotation mapping. You can use the features of your clusters in group 1 and apply them to group 2 to…
Answer: DESeq2 processing problems by Adam ▴ 30
> when I put in the dataset, I am not able to run it for DEG analysis because system asks me to remove the first column which is of gene na…
Comment: Bacterial plasmid analysis by nicole.kavanagh • 0
Thank you so much for your quick response, I have been searching scientific papers for about a week but have failed to come up with a reaso…
Comment: Bacterial plasmid analysis by GenoMax 141k
> however I'm not sure this would be appropriate in my case as the plasmid sequences are obviously much more diverse and vary in size Can…
Answer: cnetplot category names are too long by bkleiboeker ▴ 370
I'm sure someone could find a more elegant solution using `stringr::str_wrap`, but for a one-time solution I did this: # my results of…
Comment: Telescope issue by GenoMax 141k
You could edit the SAM file but I wonder if this problem is present in your original fastq data file so if not inconvenient do the alignmen…
Comment: Mutect2 for mitochondria variant discovery by GenoMax 141k
> I keep getting error. Without providing information about the actual error no one can help. Please edit the post and add this informati…
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