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News: :: FINAL CALL :: RNA-Seq Data Analysis Workshop (October 25 - 28, 2022 in Leipzig, Germany) - 2 seats left
RNA-Seq workshop transcriptomics
20 months ago by David Langenberger 11k
0
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0
replies
349
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News: Getting the most out of R course - last call
ggplot2 R tidyverse
20 months ago by carlopecoraro2 ★ 2.5k
0
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0
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434
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News: The NCTR Indel Calling from Oncopanel Sequencing Data Challenge Winners have been announced!
FDA-challenge
updated 17 months ago by 43k • written 20 months ago by ▴ 10
1
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0
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445
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News: Webinar (free) on Multimodal Single-Cell Data from winner of NeurIPS 2021
ATAC-seq CITE-seq scRNA-seq
20 months ago by Alexander ▴ 220
1
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0
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408
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News: course Reproducible Analysis With R
R Reproducibility analysis Data
20 months ago by carlopecoraro2 ★ 2.5k
10
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4
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1.0k
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News: Good morning
good morning
updated 20 months ago by 100k • written 20 months ago by 88k
6
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7
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4.2k
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News: New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
DiffBind ChIP-seq deepTools visualization ATAC-seq
20 months ago by Rory Stark ★ 2.0k
0
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0
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457
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News: Sex Chromosome Evolution course
course Genomics
updated 17 months ago by 43k • written 20 months ago by ★ 2.5k
0
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0
replies
392
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News: Online training - Data visualization in R with ggplot2
Visualization ggplot2 R Data
20 months ago by carlopecoraro2 ★ 2.5k
1
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0
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515
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News: Searching for people who can share experience (give free webinars/discuss) on multimodal single cell data
ATAC-seq CITE-seq scRNA-seq
20 months ago by Alexander ▴ 220
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0
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403
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News: Online training - Introduction to Deep Learning for biologists
Python DeepLearning bigdata MachineLearning
21 months ago by carlopecoraro2 ★ 2.5k
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0
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621
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News: 2023 EMBL Courses and Conferences
EMBL EMBLMalaria EESImaging
21 months ago by EMBL Events ▴ 10
0
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0
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427
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News: Online training -Getting the most out of R
R Science analysis Data
21 months ago by carlopecoraro2 ★ 2.5k
0
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0
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442
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News: Online training - Cancer Genomics in R
Cancer Genomics R
updated 17 months ago by 43k • written 21 months ago by ★ 2.5k
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0
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422
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News: Online training - DNA methylation in plants and animals
OxfordNanopore DNAMethylation BSseq longreads PacBio
21 months ago by carlopecoraro2 ★ 2.5k
0
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0
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439
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News: 3rd edition of the Analysis of RNA sequencing data with R/Bioconductor course.
RNAseq Bioconductor R
22 months ago by carlopecoraro2 ★ 2.5k
4
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1
reply
2.2k
views
News: 2014 ISCB Wikipedia Article Competition announcement
ISCB competition Wikipedia
written 9.8 years ago by ★ 2.0k
1
vote
2
replies
926
views
News: Online training - Introduction to Nextflow
Bionfirmatics Pipeline Workflow Netflow
21 months ago by carlopecoraro2 ★ 2.5k
4
votes
1
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658
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News: Online Course - A Practical Introduction to NGS Data Analysis (September 26-28, 2022)
workshop ngs data-analysis
updated 22 months ago by 43k • written 22 months ago by 11k
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0
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492
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News: Final Call! Tomorrow (7/8) is the Deadline for Phase 1 submissions of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel indel-calling
updated 17 months ago by 43k • written 22 months ago by ▴ 10
0
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0
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511
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News: Automate your NGS data analyses and create reproducible/scalable pipelines with NextFlow
pipeline Nextflow automation
22 months ago by David Langenberger 11k
0
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1
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1.0k
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News: Hands-On RNA-Seq Data Analysis Workshop in Leipzig, Germany (October 25-28, 2022)
RNA-Seq Transcriptomics NGS Workshop
22 months ago by David Langenberger 11k
0
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3
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1.3k
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News: Less Than One Month Remaining until the Submission Deadline for Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel indel-calling
updated 17 months ago by 43k • written 23 months ago by ▴ 10
0
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0
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427
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News: EBI Competency Hub Supporting competency-based training and professional development.
ebi carreer
22 months ago by Pierre Lindenbaum 161k
0
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0
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434
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News: Introduction to Statistics in R for biologists
tydeverse R Statistics
22 months ago by carlopecoraro2 ★ 2.5k
1
vote
0
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433
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News: Data analysis with the Tidyverse in July (18th-21st).
Visualization R Tidyverse data-analysis
updated 22 months ago by 43k • written 22 months ago by ★ 2.5k
1
vote
0
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464
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News: Use your standard DNA variant caller for SNP calling in Bisulfite-Seq data
bisulfite BS-Seq methylation
22 months ago by David Langenberger 11k
0
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0
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481
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News: online training - Data Visualization with Python
Python Data-Visualization
updated 22 months ago by 43k • written 22 months ago by ★ 2.5k
0
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0
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562
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News: Cellosaurus release 42 is available
line cell biocuration knowledgebase database
22 months ago by Amos Bairoch ▴ 120
0
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0
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412
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News: Online course- Reproducibility in Bioinformatics - 11-13 July
Docker Reproducibility
updated 17 months ago by 43k • written 23 months ago by ★ 2.5k
0
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0
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453
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News: Online statistics courses
R statistics
23 months ago by carlopecoraro2 ★ 2.5k
0
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1
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626
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News: API for accessing SARS-COV-2 genomic data
rpackage sars genomics api covid
updated 23 months ago by 142k • written 23 months ago by • 0
2
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0
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550
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News: UniProt: Annotation of biologically relevant ligands using ChEBI
binding protein site metal uniprot chebi
23 months ago by Elisabeth Gasteiger ★ 2.4k
3
votes
0
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623
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News: Tutorial on SemiBin (metagenonomics binning tool). June 14 - online
metagenomics binning
updated 23 months ago by 142k • written 23 months ago by ▴ 60
0
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0
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440
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News: Nanopore direct RNA Sequencing - online course
Sequencing direct Nanopore RNA
24 months ago by carlopecoraro2 ★ 2.5k
0
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0
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395
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News: ONLINE COURSE - LINEAR MIXED MODELS IN R - September 26th-30th
Models Mixed R
24 months ago by carlopecoraro2 ★ 2.5k
7
votes
1
reply
685
views
News: NGSymposium - Conference in Computational Biology, 23-24.09
ML statistics conference ngschool
24 months ago by kzkedzierska ▴ 290
0
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0
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484
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News: ONLINE course "Population genomic inference from low-coverage whole-genome sequencing data"
lcWGS Genomics Population
24 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
449
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News: Online course - Metabarcoding in microbial Ecology
Qiime2 Metabarcoding Microbial-Ecology
updated 17 months ago by 43k • written 2.0 years ago by ★ 2.5k
3
votes
1
reply
628
views
News: Free web seminars related to small non-coding RNA bioinformatics
smallRNA microRNA
updated 17 months ago by 43k • written 2.0 years ago by ▴ 60
0
votes
0
replies
467
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News: ONLINE COURSE - RADseq data analysis using Stacks
Phylogenomics Population RADseq Genomics Stacks
24 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
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422
views
News: Online course - Developing R/Bioconductor packages for genomics
Bioconductor R
updated 17 months ago by 43k • written 2.0 years ago by ★ 2.5k
1
vote
0
replies
588
views
News: Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge is now live!
oncopanel indel-calling
updated 17 months ago by 43k • written 2.0 years ago by ▴ 10
0
votes
2
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837
views
News: ClusteredNR NCBI BLAST database provides faster searches and more informative BLAST results
NCBI BLAST
2.0 years ago by PeterC_NCBI ▴ 410
0
votes
0
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383
views
News: NCBI poster at Bio-IT World on the new cloud BLAST tool, ElasticBLAST
NCBI BLAST ElasticBLAST
2.1 years ago by PeterC_NCBI ▴ 410
1
vote
0
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439
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News: DATA ANALYSIS WITH THE TIDYVERSE in July (18th-21st).
tidyverse data R analysis
2.1 years ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
550
views
News: Introduction to Nextflow course
Nextflow
2.1 years ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
536
views
News: Online Course - A Practical Introduction to NGS Data Analysis (May 16-18, 2022)
NGS RNA DNA Workshop
2.1 years ago by David Langenberger 11k
6
votes
0
replies
575
views
News: NGSchool2022: Machine Learning in Computational Biology
summer machine learning school ngschool ML statistics
2.1 years ago by kzkedzierska ▴ 290
0
votes
1
reply
515
views
News: Introduction to Deep Learning course
DeepLearning MachineLearning bigdata
updated 2.1 years ago by 21k • written 2.1 years ago by ★ 2.5k
1,000 results • Page 7 of 20
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Answer: DESeq2 error
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Answer: Calculate allelic frequency from VEP output vcf file
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Answer: Converting Degree Minutes (DM) to Decimal Degrees (DD) using python script by kuttibiotech2009 ▴ 30
Hello friends, Thank you for your feedback. I understand that the post may not directly relate to bioinformatics. My aim was to share …
Comment: how to treat the replicates while performing WGCNA by andres.firrincieli 3.6k
You do not merge the MEs. It is quite normal that some modules have noisy eigengenes (MEs); WGCNA is an unsupervised analysis overall. By …
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by hophuquy0944 • 0
my blast is latest version 2.15. I don't know what you want me to see in this link.
Answer: scRNAseq quality control weird double curve in nFeature vs nCount plot by valdirbarth ▴ 20
Is it possible that the cells that have their VDJ sequenced, those VDJ reads are not contributing to new genes detected? So you might be …
Comment: ggrepel function: geom_text_repel() by ntsopoul ▴ 60
The plot looks confusing, chek the documentation there is an attribute called force. If you reduce the value you should get better results.…
Comment: Sequencing Depth (Read Depth) Calculations by LucisTheFather • 0
Understood! Gonna try those two!
Comment: Sequencing Depth (Read Depth) Calculations by LucisTheFather • 0
Thank u very much!
Comment: How to extract cells of different species after mapping with combined genome? by GenoMax 142k
You have used the tag `snRNAseq`. I am not familiar with singleron tech but if you have sequence data you may be able to use `xenome` or `b…
Comment: bbmerge (bbmap) ~ error with insert size file output by GenoMax 142k
It may be best to go back to the original data and then do `bbmerge.sh` on it to get original insert size estimates (before any operations …
Comment: bbmerge (bbmap) ~ error with insert size file output by chrisk • 0
Hi Brian, Thank you and apologies for the extra future revision works. Out of curiosity we disabled neural networks 'nn=f' and the file o…
Comment: bbmerge (bbmap) ~ error with insert size file output by chrisk • 0
Hi Genomax, This is the thread: https://www.biostars.org/p/9582467/ Cheers, Chris
Comment: Inquiry about deseq2 transformation by Chen • 0
that's helpful, thanks :)
Comment: bbmerge (bbmap) ~ error with insert size file output by Brian Bushnell 20k
Ah, this is a little embarrassing; those are the vectors for the neural network. I overloaded a field that was being used for the insert s…
Comment: Annotating file using bcftools by kl ▴ 10
Thanks - I corrected it. It doesn't seem to annotate. I converted to binary after which is what is shown below. It is not the output I want…
Comment: Filtering VCF files based on VAF giving incorrect results by Arton ▴ 10
These are valid questions. Does your code address the concerns you've raised? From what I understand, FilterVcf is primarily designed for h…
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