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1,000 results • Page
2 of 20
Sort: Rank
Rank
Views
Votes
Replies
1
vote
3
replies
189
views
downloading chemical database from ChEMBL
ChEMBL
PyRMD
Virtual-Screening
updated 23 hours ago by
GenoMax
142k • written 1 day ago by
s
• 0
0
votes
3
replies
179
views
Where are the illumina adapters on Trimmomatic take from?
rna-seq
trimmomatic
updated 1 day ago by
GenoMax
142k • written 1 day ago by
bioinfo
▴ 150
1
vote
2
replies
169
views
Multiplexing for pooled CRISPR screen sequencing
multiplex
CRISPR-screen
Illumina
17 hours ago by
Tuấn Anh
• 0
2
votes
4
replies
1.1k
views
Is it possible to run CibersortX with a very small number of samples?
cibersortx
21 minutes ago by
Aspire
▴ 330
1
vote
3
replies
290
views
Functional enrichment analysis for unique gene IDs
RNA-SEQ
1 day ago by
Pegasus
▴ 100
0
votes
2
replies
192
views
Comparing Analysis Strategies for scRNA-seq Data: Separate vs. Merged Analysis of Spleen Samples from Different Conditions
Seurat
scRNA-Seq
Single-Cell
1 day ago by
Shukai
• 0
1
vote
3
replies
194
views
Question about samtools view flags (paired reads vs. properly paired reads)
samtools
updated 1 day ago by
Pierre Lindenbaum
162k • written 1 day ago by
mrk
• 0
0
votes
3
replies
236
views
z-score of gene set
z-score
scRNA
gene-set
1 day ago by
Hien
• 0
3
votes
2
replies
201
views
converting transcript IDs (Ensembl) to gene symbols in R
RNA-seq
updated 23 hours ago by
GenoMax
142k • written 1 day ago by
ashkan
▴ 160
0
votes
0
replies
104
views
Linking AMR Genes to Taxonomy in Soil Metagenomics
metagenomics
bacteria
wgs
AMR
resistome
updated 1 day ago by
GenoMax
142k • written 1 day ago by
LuciaNhu
• 0
1
vote
2
replies
181
views
How can we convert a vcf to fasta, so that I can blast some genes against that whole genome sequences?
blast
fasta
vcf
gene
updated 1 day ago by
Ram
44k • written 1 day ago by
Harshita
• 0
3
votes
0
replies
116
views
Comparing ATAC-seq narrowPeak Files from Chicken and Mouse
liftOver
ATAC-seq
csaw
updated 1 day ago by
Ram
44k • written 1 day ago by
Rafael Soler
★ 1.2k
3
votes
5
replies
471
views
Practical Haplotype Graph v2 not finding correct paths
Pangenome
PHG
graph
1 day ago by
beantkapoor16
▴ 10
0
votes
1
reply
132
views
DRAGEN gVCF files and joint calling GATK-GenomicsDB
DRAGEN
GenomicsDB
updated 1 day ago by
DBScan
▴ 310 • written 1 day ago by
brunomiwa
• 0
0
votes
0
replies
90
views
Last step of metagenome analysis before visualization
metagenome
python
analyis
1 day ago by
Ayda Ecem
• 0
0
votes
3
replies
161
views
Generating a Bed file from a Fasta file
bed
NullSeq
updated 1 day ago by
Ram
44k • written 1 day ago by
pirku
• 0
0
votes
3
replies
1.8k
views
Running STRUCTURE from command line
STRUCTURE
updated 1 day ago by
Ram
44k • written 3.0 years ago by
giulia.trauzzi
▴ 10
1
vote
3
replies
557
views
Pruning Phylogenetic Trees and Bootstrap Values
phylogenetics
bootstrap
updated 2 days ago by
Klaus S
▴ 160 • written 5 weeks ago by
Zeng Hao
▴ 40
0
votes
0
replies
88
views
Calculated LAI is too large
annotation
LAI
assembly
TE
genome
2 days ago by
Yao
▴ 30
19
votes
10
replies
7.3k
views
7 follow
T2T-CHM13 "complete" human genome gff/gtf annotation file
genomics
written 3.0 years ago by
noodle
▴ 590
0
votes
0
replies
88
views
How to recover the entire sequence from all_contig_annotations.csv?
VDJ
single-cell
TCR-seq
cellranger
10x
2 days ago by
dawnyipingzou
• 0
0
votes
4
replies
228
views
Where to find old version of GATK best practice
gatk
1 day ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
115
views
Nextflow docker: Error response from daemon
sarek
gatk4
docker
nextflow
updated 2 days ago by
Pierre Lindenbaum
162k • written 2 days ago by
Peter Chung
▴ 200
0
votes
1
reply
126
views
CreateSeuratObject taking very long
seurat
updated 1 day ago by
Nitin Narwade
★ 1.6k • written 2 days ago by
eae6d2e7
• 0
1
vote
2
replies
209
views
Elbow plot question (scRNA seq data analysis - scanpy tutorial)
scanpy
2 days ago by
ojaswinipandey
• 0
1
vote
4
replies
298
views
How to find SRA sequences of some fungal whole genome sequences if only Biosample ID is available?
SRA
whole-genome-sequencing
NCBI
updated 2 days ago by
Ram
44k • written 2 days ago by
Harshita
• 0
2
votes
4
replies
239
views
Filter Genome for Specific Sites
bedtools
updated 2 days ago by
Ram
44k • written 2 days ago by
Anita
• 0
0
votes
3
replies
252
views
Error in using BioSampleParser tool: subscript out of bounds
R
updated 2 days ago by
marco.barr
▴ 130 • written 3 days ago by
Mohamed Samir
▴ 30
1
vote
1
reply
128
views
Generating Group/Cluster Lists from fastq files
Sequencing
RNA-seq
DNA-Seq
updated 2 days ago by
GenoMax
142k • written 2 days ago by
niruf
• 0
3
votes
5
replies
438
views
Super ehancers
enhancers
updated 1 day ago by
jared.andrews07
★ 17k • written 21 days ago by
Oburah
• 0
0
votes
2
replies
182
views
vcf phasing
beagle
WhatsHap
phasing
1 day ago by
safeassli
▴ 10
0
votes
2
replies
209
views
How to generate an Upset plot in R to plot the shared variants between cell free DNA samples
r
Upset
2 days ago by
sainavyav22
• 0
0
votes
1
reply
608
views
Illumina methylation EPIC V2 array
ewas
methylation
enrichment
missMethyl
EPIC
updated 2 days ago by
fu_entomology
▴ 40 • written 8 months ago by
juliviglino
• 0
1
vote
2
replies
193
views
How to find identical sequences in genome fasta file (by Python or any possible program) ?
fasta
updated 2 days ago by
Ram
44k • written 3 days ago by
Sony
▴ 10
0
votes
3
replies
204
views
GATK Structural Variants Pipeline - Steps
SV
GATK
Variant-Calling
updated 2 days ago by
Ram
44k • written 3 days ago by
Bioinformatics_begginner
▴ 20
0
votes
0
replies
97
views
Is it possible to keep gene_id and gene_name columns using Seurat::Read10X?
Seurat
single-cell
scRNA-seq
updated 2 days ago by
Ram
44k • written 3 days ago by
ev97
▴ 20
0
votes
1
reply
141
views
GO analysis: Indicate genes corresponding to the pathway
GeneOntoloy
GO
R
updated 2 days ago by
marco.barr
▴ 130 • written 3 days ago by
sooni
▴ 20
0
votes
1
reply
106
views
How to hide label in layout file of MCscan (python version)
MCscan
updated 2 days ago by
GenoMax
142k • written 3 days ago by
jinyi
• 0
0
votes
0
replies
83
views
ENCORI or starBase : ceRNA data retrieval using Web API and curl
ceRNA
ENCORI
curl
microRNA
starBase
3 days ago by
V_Vibes
• 0
0
votes
0
replies
176
views
How to deal with possibly important predictors omitted during the building of an OLS multivariant linear regression model?
multivariant-linear-regression
updated 2 days ago by
Ram
44k • written 3 days ago by
JorgeVallejo
▴ 20
0
votes
0
replies
104
views
transcriptome annotation
annotation
trinity
transcriptome
updated 2 days ago by
Ram
44k • written 3 days ago by
Asim Bin Arshad
• 0
0
votes
5
replies
230
views
Why most genes have high padj values
RNA-seq
DEG
updated 2 days ago by
Ram
44k • written 3 days ago by
mnx0723
• 0
7
votes
14
replies
2.9k
views
6 follow
How to find tandem duplications pattern in a DNA sequence
Repeat
updated 3 days ago by
micah
▴ 30 • written 3.1 years ago by
kumajis
• 0
0
votes
1
reply
150
views
PCA Visualization error in R - arguments imply differing number of rows
SNPs
PCA
GBS
LINUX
r
updated 3 days ago by
zx8754
11k • written 3 days ago by
Ali
• 0
0
votes
4
replies
254
views
GO analysis: p-value range
GO
R
updated 3 days ago by
Matthias Zepper
4.6k • written 3 days ago by
sooni
▴ 20
0
votes
3
replies
242
views
seqtk subseq in.fastq list.txt > out.fastq not extracting full sequence from input file
subseq
seqtk
extractionproblem
updated 3 days ago by
GenoMax
142k • written 4 days ago by
KHURRAM SHAHZAD
• 0
0
votes
0
replies
103
views
Challenges of Affymetrix probe IDs for grouping similar genes to calculate their mean
R
Mean
Affymetrix
Probes
Grouping
3 days ago by
Maryam
• 0
0
votes
4
replies
342
views
scRNA-seq data trained model can be used for predictions on bulk RNA-seq data?
rna-seq
3 days ago by
Bibi
• 0
1
vote
2
replies
357
views
is there a tool to recover corrupted fastq files
fastq
short-read
updated 3 days ago by
Tommaso
• 0 • written 3 months ago by
pt.taklifi
▴ 60
0
votes
0
replies
115
views
handling bio replicates for chromHMM
replicates
chromHMM
3 days ago by
Hasan_Daaboul
• 0
1,000 results • Page
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Recent Votes
A: Fold change - a final explanation
Comment: scRNA-seq quality control
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Setting up Aspera Connect (ascp) on Linux and macOS
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Answer: Genes' fpkm values through cufflink
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Recent Replies
Comment: Is it possible to run CibersortX with a very small number of samples?
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▴ 330
Thanks. I have checked that all files are tab delimited, with the first column named Gene_Symbols, with capitalized gene symbols, and no qu…
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by
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▴ 300
Someone, presumably you, opened an [issue][1] for the same problem. The answer was: > This problem should be fixed in htslib 1.20 (incl…
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19k
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Alright! Got you...
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In my opinion, the basis of the question is to solve whether the phenotype is regulated by genetics. In the aspect of genetic, the estima…
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You can apply Z-scores on whatever you want, but it must make sense and depends on what you want to do. What is the context? See for exampl…
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