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Showing :
questions
2
votes
6
replies
1.0k
views
Increased GC content after trimming RNAseq data
rnaseq
21 months ago by
guillaume.rbt
★ 1.0k
2
votes
3
replies
716
views
Validate RNAseq salmon quantification pipeline
salmon
rnaseq
2.0 years ago by
guillaume.rbt
★ 1.0k
3
votes
2
replies
1.7k
views
Structural variants calling in a population
structural variants
updated 2.9 years ago by
Benbird
• 0 • written 6.9 years ago by
guillaume.rbt
★ 1.0k
41
votes
20
replies
37k
views
12 follow
output TMM normalized counts with edgeR
differential expression
RNA-Seq
updated 24 months ago by
N.
• 0 • written 5.9 years ago by
guillaume.rbt
★ 1.0k
13
votes
9
replies
5.9k
views
download protein sequences from NCBI
fasta
ncbi
protein
updated 3.6 years ago by
Kevin Blighe
87k • written 7.7 years ago by
guillaume.rbt
★ 1.0k
4
votes
10
replies
1.4k
views
Blastp against (only) human Sars-cov1 : which taxid?
blastp
3.9 years ago by
guillaume.rbt
★ 1.0k
1
vote
2
replies
1.5k
views
Makeblastdb refseq viral protein sequence (Blast db v5)
blast
refseq
3.9 years ago by
guillaume.rbt
★ 1.0k
2
votes
5
replies
1.1k
views
gene expression correlation positive controls scRNAseq
scRNAseq
gene expression correlation
updated 4.0 years ago by
GouthamAtla
12k • written 4.0 years ago by
guillaume.rbt
★ 1.0k
1
vote
2
replies
1.8k
views
single cell RNA seq gene co-expression
scRNAseq
gene co-expression
4.3 years ago by
guillaume.rbt
★ 1.0k
4
votes
8
replies
1.5k
views
RNAseq differential expression analysis : relevance of Immunoglobulin genes enrichment ?
RNA-Seq
immunology
4.4 years ago by
guillaume.rbt
★ 1.0k
1
vote
2
replies
2.4k
views
relevance of GSEA on Nanostring ncounter gene expression data ?
nanostring
GSEA
updated 4.5 years ago by
i.sudbery
19k • written 4.5 years ago by
guillaume.rbt
★ 1.0k
8
votes
15
replies
2.0k
views
RNAseq differential expression analysis : no significative FDR but significative GO enrichment
RNA-Seq
differential expression
4.5 years ago by
guillaume.rbt
★ 1.0k
5
votes
4
replies
1.9k
views
GDC portal : search by drug
GDC
RNAseq
updated 4.5 years ago by
Kevin Blighe
87k • written 4.5 years ago by
guillaume.rbt
★ 1.0k
1
vote
5
replies
1.6k
views
Multiple alignment filtering
multipe alignement
clustal
4.5 years ago by
guillaume.rbt
★ 1.0k
2
votes
4
replies
1.1k
views
RNAseq : whole transcriptome vs targeted for differential expression analysis
RNA-Seq
differential expression analysis
4.6 years ago by
guillaume.rbt
★ 1.0k
4
votes
2
replies
1.4k
views
Filter gene list for membrane expressed protein
membrane protein
extracellular domains
4.6 years ago by
guillaume.rbt
★ 1.0k
1
vote
3
replies
1.2k
views
RNA-seq differential expression : relevance of mixing several datasets
RNA-Seq
differential expression
updated 4.8 years ago by
leaodel
▴ 190 • written 4.8 years ago by
guillaume.rbt
★ 1.0k
15
votes
16
replies
1.8k
views
RNA-seq differential expression analysis with high number of samples
RNA-Seq
differential expression
updated 4.8 years ago by
Charles Warden
8.2k • written 4.8 years ago by
guillaume.rbt
★ 1.0k
3
votes
4
replies
1.3k
views
Relevance of RNAseq meta-analysis
RNA-Seq
differential expression
updated 4.9 years ago by
Asaf
10k • written 4.9 years ago by
guillaume.rbt
★ 1.0k
2
votes
8
replies
2.1k
views
Deseq2 positive results for genes highly variable between replicates
deseq2
RNAseq
4.9 years ago by
guillaume.rbt
★ 1.0k
3
votes
8
replies
4.2k
views
ENA data download : difference between "FASTQ" and "Submitted" files ?
ENA
EBI
fastq
5.0 years ago by
guillaume.rbt
★ 1.0k
6
votes
5
replies
1.7k
views
What human transcriptome annotation to use for RNA-seq analysis
RNA-Seq
annotation
updated 5.0 years ago by
Benn
8.3k • written 5.0 years ago by
guillaume.rbt
★ 1.0k
2
votes
4
replies
4.4k
views
ATAC-seq : which read length?
ATAC-seq
sequencing
5.1 years ago by
guillaume.rbt
★ 1.0k
4
votes
4
replies
2.1k
views
RNAseq data anti-pd1 treatment
RNA-Seq
immunotherapy
meta-analysis
5.1 years ago by
guillaume.rbt
★ 1.0k
4
votes
6
replies
1.1k
views
"old" microarray probes IDs correspondance with gene names
microarray
trancripts
annotation
embl
updated 5.2 years ago by
Pierre Lindenbaum
161k • written 5.2 years ago by
guillaume.rbt
★ 1.0k
10
votes
6
replies
1.8k
views
RNAseq differential expression analysis : learning design matrix
RNA-Seq
differential expression
updated 5.2 years ago by
i.sudbery
19k • written 5.2 years ago by
guillaume.rbt
★ 1.0k
2
votes
3
replies
3.4k
views
Differential expression analysis with DEseq2 : multiple groups comparison
RNA-Seq
differential expression
updated 5.9 years ago by
Devon Ryan
104k • written 5.9 years ago by
guillaume.rbt
★ 1.0k
8
votes
9
replies
3.6k
views
rna seq replicates not clustering
RNA-Seq
differential expression
pca
6.0 years ago by
guillaume.rbt
★ 1.0k
4
votes
4
replies
2.7k
views
Generate transcriptome fasta for RNA-seq analysis with Salmon
RNA-Seq
transcriptome
6.0 years ago by
guillaume.rbt
★ 1.0k
3
votes
6
replies
4.7k
views
multi-mapped reads counting methods with RNA-seq
RNA-Seq
expression
gene count
6.0 years ago by
guillaume.rbt
★ 1.0k
6
votes
4
replies
1.5k
views
Difference between lower and upper case N in soft masked genome
genome
masking
reference
6.0 years ago by
guillaume.rbt
★ 1.0k
3
votes
7
replies
4.7k
views
long reads Pacbio SNP calling
pacbio
SNP
updated 6.4 years ago by
tjduncan
▴ 280 • written 6.6 years ago by
guillaume.rbt
★ 1.0k
7
votes
4
replies
3.9k
views
Scaffolding with pacbio reads
assembly
pacbio
scaffold
contig
updated 6.8 years ago by
shwethacm
▴ 240 • written 6.8 years ago by
guillaume.rbt
★ 1.0k
1
vote
0
replies
1.4k
views
breakseq2 non human data
indel
structural variants
bam
6.9 years ago by
guillaume.rbt
★ 1.0k
2
votes
2
replies
3.4k
views
convert VCF into bayescan format
vcf
bayescan
updated 7.0 years ago by
ivivek_ngs
★ 5.2k • written 7.0 years ago by
guillaume.rbt
★ 1.0k
0
votes
1
reply
1.1k
views
Transcriptome assembly to validate annotations
transcriptome
Assembly
RNA-Seq
annotations
7.1 years ago by
guillaume.rbt
★ 1.0k
6
votes
6
replies
2.6k
views
RNA seq differential expression clustering tools
RNA-Seq
clustering
updated 7.2 years ago by
Farbod
★ 3.4k • written 7.2 years ago by
guillaume.rbt
★ 1.0k
1
vote
2
replies
1.5k
views
crossing multiple annotations and validation with RNA-seq
RNA-seq
annotation
updated 8 months ago by
Ram
43k • written 7.2 years ago by
guillaume.rbt
★ 1.0k
1
vote
1
reply
2.0k
views
multi vcf population genomics analysis
vcf
population
7.3 years ago by
guillaume.rbt
★ 1.0k
3
votes
2
replies
2.7k
views
coverage on exons with bedtools genomecov
bedtools
RNA-Seq
exons
coverage
updated 7.4 years ago by
Jeffin Rockey
★ 1.3k • written 7.4 years ago by
guillaume.rbt
★ 1.0k
3
votes
5
replies
1.7k
views
Find gene on genome from cds
CDS
genome
7.5 years ago by
guillaume.rbt
★ 1.0k
1
vote
2
replies
1.5k
views
retro-engineered annotation on genome assembly
Assembly
blast
bdbh
annotation
peptides
updated 7.5 years ago by
Bill Pearson
★ 1.0k • written 7.5 years ago by
guillaume.rbt
★ 1.0k
1
vote
1
reply
2.7k
views
which tool to compare two proteomes ?
proteome
fasta
peptides
software
7.6 years ago by
guillaume.rbt
★ 1.0k
0
votes
1
reply
1.4k
views
Mauve LCBs total length
mauve
software
genome alignment
7.6 years ago by
guillaume.rbt
★ 1.0k
1
vote
3
replies
2.8k
views
Help to filter blastp results
blast
filter
fasta
7.6 years ago by
guillaume.rbt
★ 1.0k
5
votes
2
replies
1.3k
views
Analyse RNA-seq differential expression data
RNA-Seq
differential expression
updated 7.7 years ago by
Benn
8.3k • written 7.7 years ago by
guillaume.rbt
★ 1.0k
2
votes
2
replies
4.0k
views
Microsatellite analysis software
software
microsatellites
updated 7.7 years ago by
natasha.sernova
★ 4.0k • written 7.7 years ago by
guillaume.rbt
★ 1.0k
4
votes
4
replies
4.6k
views
KGML pathway download
gene
7.8 years ago by
guillaume.rbt
★ 1.0k
0
votes
1
reply
4.3k
views
filter VCF on VAF
vcf
SNP
7.8 years ago by
guillaume.rbt
★ 1.0k
2
votes
3
replies
4.7k
views
using GATK IndelRealigner
alignment
7.8 years ago by
guillaume.rbt
★ 1.0k
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