User: rbronste

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148

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deconvolution liftover music2

7 weeks ago by rbronste ▴ 420

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0

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242

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velocity scvelo RNA

5 months ago by rbronste ▴ 420

2

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2

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406

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SNP splicing isoform

updated 5 months ago by Jeremy Leipzig 22k • written 5 months ago by rbronste ▴ 420

3

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9

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693

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STAR RNA-seq STARsolo Velocyto

updated 6 months ago by Ram 43k • written 6 months ago by rbronste ▴ 420

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4

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659

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salmon seurat alevin

9 months ago by rbronste ▴ 420

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1.2k

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Seurat

9 months ago by rbronste ▴ 420

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3

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848

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dgCMatrix sparse RangedSummarizedExperiment matrix

updated 13 months ago by ATpoint 82k • written 13 months ago by rbronste ▴ 420

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3

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809

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TF Jaspar motif PWM

16 months ago by rbronste ▴ 420

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0

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355

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snATAC-seq snRNA-seq signac multiome seurat

21 months ago by rbronste ▴ 420

2

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2

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645

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10x Genomics multiome scRNA-seq

24 months ago by rbronste ▴ 420

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3

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622

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rosa locus snRNA-seq reporter scRNA-seq

2.1 years ago by rbronste ▴ 420

2

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3

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2.9k

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liftOver Assembly

updated 2.5 years ago by kai_bio ▴ 50 • written 7.2 years ago by rbronste ▴ 420

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2

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3.5k

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bedtools bedops

updated 3.6 years ago by esimonova.me ▴ 20 • written 6.9 years ago by rbronste ▴ 420

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12

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6.8k

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ChIP-Seq blacklisted regions

updated 3.6 years ago by ATpoint 82k • written 7.0 years ago by rbronste ▴ 420

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3

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935

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seurat scRNA-seq

4.0 years ago by rbronste ▴ 420

5

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2

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2.9k

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bed gene symbol DEseq2

updated 4.2 years ago by nathan bowen ▴ 20 • written 6.3 years ago by rbronste ▴ 420

3

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11

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1.5k

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grep awk sed bash unix

updated 4.2 years ago by Ram 43k • written 4.2 years ago by rbronste ▴ 420

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0

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745

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ggplot2 ggplot

4.3 years ago by rbronste ▴ 420

5

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3

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2.6k

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EnhancedVolcano volcano plot R

updated 4.3 years ago by zx8754 11k • written 4.3 years ago by rbronste ▴ 420

2

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3

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750

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awk sed grep

4.3 years ago by rbronste ▴ 420

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6

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857

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awk

updated 4.3 years ago by zx8754 11k • written 4.3 years ago by rbronste ▴ 420

12

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4

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10k

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EnhancedVolcano volcano plot

updated 4.3 years ago by Kevin Blighe 87k • written 4.3 years ago by rbronste ▴ 420

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5

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4.3k

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volcano plot EnhancedVolcano

4.4 years ago by rbronste ▴ 420

8

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3

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2.6k

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ggplot2 plot genomic ranges R

updated 4.4 years ago by bernatgel ★ 3.4k • written 4.5 years ago by rbronste ▴ 420

2

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2

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822

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R data.frame matrix ggplot2

updated 4.4 years ago by zx8754 11k • written 4.4 years ago by rbronste ▴ 420

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3

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888

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bedtools bedops bed interval

4.4 years ago by rbronste ▴ 420

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3

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12k

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plotting volcano plot

4.5 years ago by rbronste ▴ 420

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1

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853

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bowtie2 sequence alignment

4.5 years ago by rbronste ▴ 420

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3

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2.6k

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bowtie2 fastq software error

updated 4.5 years ago by Biostar 20 • written 4.7 years ago by rbronste ▴ 420

9

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3

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1.4k

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awk bed bedtools bedops interval

4.6 years ago by rbronste ▴ 420

2

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3

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2.8k

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bedtools bedops bamtobed bed

updated 4.6 years ago by ATpoint 82k • written 4.6 years ago by rbronste ▴ 420

4

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3

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2.0k

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R ggplot density plot bed bedops

updated 4.6 years ago by Nicolas Rosewick 11k • written 4.6 years ago by rbronste ▴ 420

4

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1

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2.7k

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bedtools bed bedops

4.6 years ago by rbronste ▴ 420

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2

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870

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bed bedops bedtools annotations

4.7 years ago by rbronste ▴ 420

2

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2

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4.1k

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DiffBind ChIP-Seq BED NarrowPeak

updated 5.0 years ago by corinne_hutfilz • 0 • written 6.6 years ago by rbronste ▴ 420

1

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4

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1.4k

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alignment bowtie2 bam fastq

5.4 years ago by rbronste ▴ 420

2

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6

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2.5k

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pyGenomeTracks deeptools hicmatrix hicexplorer

updated 5.4 years ago by wolffj.bioinf ▴ 10 • written 5.6 years ago by rbronste ▴ 420

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6

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1.2k

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bedtools bedops bed interval

updated 5.4 years ago by Alex Reynolds 35k • written 5.4 years ago by rbronste ▴ 420

2

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1

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1.7k

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phyloP conservation UCSC

updated 5.5 years ago by Biostar 20 • written 5.5 years ago by rbronste ▴ 420

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0

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936

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bedops bedtools bed intervals

5.5 years ago by rbronste ▴ 420

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2

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1.5k

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bam samtools sam

updated 5.5 years ago by lakhujanivijay 5.8k • written 5.5 years ago by rbronste ▴ 420

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1

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1.3k

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read depth BAM bed bedtools bedops

updated 5.5 years ago by Pierre Lindenbaum 161k • written 5.5 years ago by rbronste ▴ 420

3

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2

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1.6k

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bed interval bedops bedtools

updated 5.5 years ago by Alex Reynolds 35k • written 5.5 years ago by rbronste ▴ 420

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1

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1.1k

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panther pathway analysis gene ontology GO

updated 5.5 years ago by c.chakraborty ▴ 170 • written 5.5 years ago by rbronste ▴ 420

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0

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857

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conservation phyloP branch phastCons

5.5 years ago by rbronste ▴ 420

4

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2

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3.5k

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refseq bed mm10

updated 5.5 years ago by vkkodali_ncbi ★ 3.7k • written 5.5 years ago by rbronste ▴ 420

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4

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1.6k

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motif ChIP-Seq transcription factor sequence PWM

updated 5.5 years ago by UnivStudent ▴ 430 • written 5.6 years ago by rbronste ▴ 420

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7

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1.5k

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meme ame tsv bed motif

5.5 years ago by rbronste ▴ 420

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2

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1.5k

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bedops bed sort-bed intervals

5.5 years ago by rbronste ▴ 420

3

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1

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842

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RNA-Seq ATAC-seq enhancer gene expression

updated 5.6 years ago by Kristoffer Vitting-Seerup ★ 4.0k • written 5.6 years ago by rbronste ▴ 420